Wall clock time and date at job start Tue Mar 31 2020 12:09:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.35901 * 117.00017 * 2 1
4 4 C 1.38732 * 120.05580 * 180.02562 * 3 2 1
5 5 C 1.38143 * 119.94416 * 180.02562 * 4 3 2
6 6 C 1.38270 * 120.05689 * 0.02562 * 5 4 3
7 7 C 1.50703 * 119.94562 * 179.97438 * 6 5 4
8 8 N 1.46897 * 109.46779 * 132.84380 * 7 6 5
9 9 C 1.46906 * 110.99380 * 159.92852 * 8 7 6
10 10 C 1.53001 * 109.47333 * 288.41227 * 9 8 7
11 11 C 1.50698 * 115.54987 * 300.45342 * 10 9 8
12 12 H 1.08001 * 120.00054 * 0.40819 * 11 10 9
13 13 C 1.37871 * 119.99593 * 180.13518 * 11 10 9
14 14 N 1.31515 * 120.00573 * 0.27447 * 13 11 10
15 15 Si 1.86806 * 119.99573 * 180.27350 * 13 11 10
16 16 H 1.48496 * 109.47477 * 60.00026 * 15 13 11
17 17 H 1.48507 * 109.46876 * 179.97438 * 15 13 11
18 18 H 1.48496 * 109.47095 * 299.99534 * 15 13 11
19 19 C 1.53002 * 117.49699 * 86.12044 * 10 9 8
20 20 C 1.52996 * 117.49843 * 154.77880 * 10 9 8
21 21 C 1.46900 * 111.00136 * 283.87890 * 8 7 6
22 22 C 1.52990 * 109.47377 * 292.43326 * 21 8 7
23 23 C 1.52995 * 109.46816 * 52.43864 * 21 8 7
24 24 C 1.53001 * 109.47007 * 172.43332 * 21 8 7
25 25 C 1.38267 * 120.11136 * 0.24806 * 6 5 4
26 26 C 1.38151 * 120.05280 * 359.45825 * 25 6 5
27 27 H 1.09002 * 109.47525 * 179.97438 * 1 2 3
28 28 H 1.09002 * 109.47121 * 300.00046 * 1 2 3
29 29 H 1.09002 * 109.47557 * 59.99551 * 1 2 3
30 30 H 1.07995 * 120.02587 * 0.02562 * 4 3 2
31 31 H 1.08001 * 119.97650 * 179.97438 * 5 4 3
32 32 H 1.08998 * 109.47033 * 12.84390 * 7 6 5
33 33 H 1.08999 * 109.46700 * 252.84561 * 7 6 5
34 34 H 1.09003 * 109.46859 * 168.41027 * 9 8 7
35 35 H 1.08996 * 109.47287 * 48.41774 * 9 8 7
36 36 H 0.96999 * 120.00221 * 180.02562 * 14 13 11
37 37 H 1.08992 * 117.49731 * 215.00756 * 19 10 9
38 38 H 1.09000 * 117.49458 * 0.02635 * 19 10 9
39 39 H 1.09004 * 117.50133 * 359.97438 * 20 10 9
40 40 H 1.09000 * 117.50221 * 144.97109 * 20 10 9
41 41 H 1.08999 * 109.47188 * 59.91346 * 22 21 8
42 42 H 1.09003 * 109.47295 * 179.91232 * 22 21 8
43 43 H 1.08998 * 109.47823 * 299.91181 * 22 21 8
44 44 H 1.09003 * 109.47408 * 49.42819 * 23 21 8
45 45 H 1.08999 * 109.47385 * 169.43298 * 23 21 8
46 46 H 1.09003 * 109.46832 * 289.43292 * 23 21 8
47 47 H 1.09000 * 109.46895 * 66.61727 * 24 21 8
48 48 H 1.09000 * 109.47204 * 186.61987 * 24 21 8
49 49 H 1.09007 * 109.47189 * 306.62163 * 24 21 8
50 50 H 1.07998 * 119.97217 * 179.70403 * 25 6 5
51 51 H 1.07999 * 120.02772 * 180.25317 * 26 25 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2109 0.0000
4 6 3.4313 1.2848 -0.0005
5 6 4.0560 2.5169 0.0000
6 6 3.3019 3.6758 0.0016
7 6 3.9860 5.0186 0.0028
8 7 3.3687 5.8835 -1.0115
9 6 3.6518 7.2990 -0.7390
10 6 2.8535 7.7525 0.4849
11 6 1.3565 7.6250 0.3682
12 1 0.9171 7.2281 -0.5350
13 6 0.5481 8.0098 1.4167
14 7 1.0831 8.4931 2.5166
15 14 -1.3072 7.8446 1.2750
16 1 -1.6618 6.4198 1.0527
17 1 -1.9439 8.3230 2.5284
18 1 -1.7907 8.6593 0.1315
19 6 3.4774 7.5172 1.8620
20 6 3.4015 8.9340 1.2877
21 6 3.8096 5.5089 -2.3618
22 6 5.2981 5.8254 -2.5184
23 6 3.5812 4.0112 -2.5756
24 6 3.0082 6.2999 -3.3977
25 6 1.9210 3.6048 0.0079
26 6 1.2914 2.3751 0.0012
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3634 0.5139 -0.8899
30 1 4.0208 0.3800 -0.0014
31 1 5.1345 2.5751 0.0000
32 1 5.0436 4.8877 -0.2263
33 1 3.8813 5.4788 0.9853
34 1 3.3655 7.8995 -1.6025
35 1 4.7169 7.4258 -0.5455
36 1 0.5144 8.7635 3.2544
37 1 2.8050 7.2702 2.6835
38 1 4.4567 7.0397 1.8959
39 1 4.3310 9.3881 0.9441
40 1 2.6793 9.6195 1.7310
41 1 5.8689 5.2630 -1.7795
42 1 5.6256 5.5459 -3.5199
43 1 5.4606 6.8926 -2.3677
44 1 2.5635 3.7533 -2.2825
45 1 3.7291 3.7677 -3.6276
46 1 4.2884 3.4457 -1.9688
47 1 3.2608 7.3575 -3.3220
48 1 3.2504 5.9390 -4.3973
49 1 1.9424 6.1667 -3.2116
50 1 1.3342 4.5114 0.0139
51 1 0.2129 2.3202 0.0020
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001653787364.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:09:55
Heat of formation + Delta-G solvation = 34.204758 kcal
Electronic energy + Delta-G solvation = -28691.719895 eV
Core-core repulsion = 25172.116499 eV
Total energy + Delta-G solvation = -3519.603396 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 317.210 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.15816 -39.01847 -37.03058 -36.05834 -32.35091 -31.46339 -30.71695 -30.30667
-27.74731 -27.10130 -26.67855 -25.94458 -24.91088 -23.48283 -22.21749 -21.04306
-20.42458 -18.93269 -18.15898 -17.89088 -16.14085 -15.91701 -15.70905 -15.53897
-14.94489 -14.86600 -14.23081 -13.97635 -13.84178 -13.59733 -13.31705 -13.17124
-13.07681 -12.80147 -12.46662 -12.22337 -11.91070 -11.81978 -11.65541 -11.42119
-11.36684 -11.28806 -11.00562 -10.91624 -10.68757 -10.62055 -10.60067 -10.53607
-10.35370 -10.09288 -10.03881 -9.87448 -9.38440 -8.76532 -8.57941 -8.21376
-7.97693 -7.61569 -7.46777 -5.86609 -3.88696 1.67883 1.81743 3.33437
3.38915 3.41300 3.42125 4.08075 4.46261 4.50293 5.02998 5.14245
5.16731 5.17412 5.23189 5.25993 5.29811 5.39356 5.46212 5.54496
5.70652 5.72682 5.78434 5.83378 5.91279 5.95458 6.06618 6.09599
6.12009 6.21482 6.21904 6.24725 6.37059 6.38285 6.45388 6.49921
6.62011 6.63131 6.68423 6.73105 6.79574 6.84487 7.08452 7.11443
7.14482 7.27748 7.37917 7.62903 7.76263 7.87128 7.96179 8.13969
8.28816 8.64335 9.08488 9.64809 11.09788
Molecular weight = 317.21amu
Principal moments of inertia in cm(-1)
A = 0.010180 B = 0.005628 C = 0.004328
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2749.732037 B = 4973.499716 C = 6467.610561
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.325 6.325
3 C 0.110 3.890
4 C -0.158 4.158
5 C -0.091 4.091
6 C -0.086 4.086
7 C 0.086 3.914
8 N -0.499 5.499
9 C 0.099 3.901
10 C 0.030 3.970
11 C -0.446 4.446
12 H 0.064 0.936
13 C 0.054 3.946
14 N -0.885 5.885
15 Si 0.890 3.110
16 H -0.278 1.278
17 H -0.291 1.291
18 H -0.279 1.279
19 C -0.192 4.192
20 C -0.191 4.191
21 C 0.101 3.899
22 C -0.179 4.179
23 C -0.145 4.145
24 C -0.135 4.135
25 C -0.044 4.044
26 C -0.211 4.211
27 H 0.094 0.906
28 H 0.054 0.946
29 H 0.053 0.947
30 H 0.121 0.879
31 H 0.120 0.880
32 H 0.032 0.968
33 H 0.104 0.896
34 H 0.068 0.932
35 H 0.012 0.988
36 H 0.256 0.744
37 H 0.108 0.892
38 H 0.037 0.963
39 H 0.037 0.963
40 H 0.110 0.890
41 H 0.053 0.947
42 H 0.052 0.948
43 H 0.056 0.944
44 H 0.068 0.932
45 H 0.043 0.957
46 H 0.062 0.938
47 H 0.054 0.946
48 H 0.048 0.952
49 H 0.065 0.935
50 H 0.145 0.855
51 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.994 -11.634 -7.359 14.334
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.239 6.239
3 C 0.065 3.935
4 C -0.177 4.177
5 C -0.110 4.110
6 C -0.087 4.087
7 C -0.041 4.041
8 N -0.221 5.221
9 C -0.028 4.028
10 C 0.029 3.971
11 C -0.484 4.484
12 H 0.082 0.918
13 C -0.146 4.146
14 N -0.524 5.524
15 Si 0.719 3.281
16 H -0.204 1.204
17 H -0.217 1.217
18 H -0.205 1.205
19 C -0.230 4.230
20 C -0.229 4.229
21 C 0.012 3.988
22 C -0.238 4.238
23 C -0.202 4.202
24 C -0.192 4.192
25 C -0.062 4.062
26 C -0.229 4.229
27 H 0.112 0.888
28 H 0.073 0.927
29 H 0.072 0.928
30 H 0.139 0.861
31 H 0.138 0.862
32 H 0.050 0.950
33 H 0.122 0.878
34 H 0.086 0.914
35 H 0.030 0.970
36 H 0.066 0.934
37 H 0.126 0.874
38 H 0.055 0.945
39 H 0.056 0.944
40 H 0.128 0.872
41 H 0.072 0.928
42 H 0.071 0.929
43 H 0.075 0.925
44 H 0.087 0.913
45 H 0.062 0.938
46 H 0.080 0.920
47 H 0.073 0.927
48 H 0.067 0.933
49 H 0.084 0.916
50 H 0.163 0.837
51 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 3.483 -11.812 -7.168 14.248
hybrid contribution -0.305 0.216 0.086 0.384
sum 3.178 -11.595 -7.082 13.954
Atomic orbital electron populations
1.22977 0.78885 1.03258 1.01470 1.85999 1.21004 1.27586 1.89323
1.18979 0.92294 0.83850 0.98362 1.20176 0.91193 0.98067 1.08271
1.20749 0.99211 0.91298 0.99712 1.19815 0.94013 0.94426 1.00463
1.21191 0.93964 0.90543 0.98411 1.62081 1.57517 1.03179 0.99358
1.21670 0.95070 0.87089 0.98964 1.18935 0.93713 0.97682 0.86775
1.20472 0.88596 1.38822 1.00480 0.91782 1.25000 0.98290 0.95709
0.95610 1.70002 1.34072 1.43288 1.05022 0.86690 0.86062 0.78346
0.77021 1.20405 1.21677 1.20520 1.22824 0.98042 0.99400 1.02727
1.22844 0.99483 0.92935 1.07676 1.21070 0.91888 0.95346 0.90541
1.22501 0.98298 1.01728 1.01268 1.22305 1.02996 0.94709 1.00166
1.21843 1.01193 0.99613 0.96583 1.21089 0.94461 0.97373 0.93321
1.21283 0.99741 0.92516 1.09396 0.88791 0.92735 0.92807 0.86135
0.86228 0.94961 0.87789 0.91419 0.97022 0.93358 0.87418 0.94454
0.94448 0.87169 0.92845 0.92898 0.92470 0.91337 0.93819 0.91965
0.92661 0.93347 0.91558 0.83723 0.86097
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.30 9.81 101.05 0.99 1.29 16
2 O -0.33 -4.47 10.50 -19.43 -0.20 -4.68 16
3 C 0.11 1.63 6.69 -39.22 -0.26 1.37 16
4 C -0.16 -2.23 9.99 -39.43 -0.39 -2.62 16
5 C -0.09 -1.29 7.73 -39.60 -0.31 -1.59 16
6 C -0.09 -1.39 3.12 -104.60 -0.33 -1.71 16
7 C 0.09 1.47 4.67 -4.98 -0.02 1.45 16
8 N -0.50 -8.73 3.62 -220.41 -0.80 -9.53 16
9 C 0.10 1.94 3.68 -3.82 -0.01 1.92 16
10 C 0.03 0.69 1.99 -155.66 -0.31 0.39 16
11 C -0.45 -11.46 8.99 -34.44 -0.31 -11.77 16
12 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16
13 C 0.05 1.42 5.27 -17.82 -0.09 1.33 16
14 N -0.88 -24.09 8.59 55.43 0.48 -23.62 16
15 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16
16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
19 C -0.19 -4.57 7.68 -26.69 -0.21 -4.78 16
20 C -0.19 -4.62 9.37 -26.70 -0.25 -4.87 16
21 C 0.10 1.51 0.71 -131.61 -0.09 1.42 16
22 C -0.18 -2.43 7.80 37.15 0.29 -2.14 16
23 C -0.14 -2.05 6.95 37.16 0.26 -1.79 16
24 C -0.13 -1.96 8.20 37.16 0.30 -1.66 16
25 C -0.04 -0.76 7.85 -39.60 -0.31 -1.07 16
26 C -0.21 -3.25 9.04 -39.43 -0.36 -3.61 16
27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
28 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16
29 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16
30 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16
31 H 0.12 1.45 7.98 -52.49 -0.42 1.03 16
32 H 0.03 0.51 5.81 -51.93 -0.30 0.21 16
33 H 0.10 2.04 4.68 -51.93 -0.24 1.80 16
34 H 0.07 1.32 5.94 -51.93 -0.31 1.02 16
35 H 0.01 0.22 7.09 -51.93 -0.37 -0.15 16
36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16
37 H 0.11 2.88 6.31 -51.93 -0.33 2.55 16
38 H 0.04 0.82 7.25 -51.93 -0.38 0.44 16
39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16
40 H 0.11 2.96 6.26 -51.93 -0.33 2.64 16
41 H 0.05 0.72 6.34 -51.93 -0.33 0.39 16
42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
43 H 0.06 0.81 6.71 -51.93 -0.35 0.46 16
44 H 0.07 1.07 6.11 -51.93 -0.32 0.75 16
45 H 0.04 0.56 8.06 -51.93 -0.42 0.14 16
46 H 0.06 0.86 4.83 -51.93 -0.25 0.61 16
47 H 0.05 0.82 6.51 -51.93 -0.34 0.48 16
48 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16
49 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
50 H 0.15 2.85 7.94 -52.49 -0.42 2.43 16
51 H 0.12 1.69 6.30 -52.49 -0.33 1.36 16
LS Contribution 377.40 15.07 5.69 5.69
Total: -1.00 -26.94 377.40 -9.56 -36.50
By element:
Atomic # 1 Polarization: 16.58 SS G_CDS: -8.29 Total: 8.28 kcal
Atomic # 6 Polarization: -27.04 SS G_CDS: -1.41 Total: -28.45 kcal
Atomic # 7 Polarization: -32.83 SS G_CDS: -0.32 Total: -33.15 kcal
Atomic # 8 Polarization: -4.47 SS G_CDS: -0.20 Total: -4.68 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -26.94 -9.56 -36.50 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001653787364.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.705 kcal
(2) G-P(sol) polarization free energy of solvation -26.937 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.768 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.500 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.205 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds