Wall clock time and date at job start Tue Mar 31 2020 12:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 117.00017 * 2 1 4 4 C 1.38732 * 120.05580 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94416 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05689 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94562 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.46779 * 132.84380 * 7 6 5 9 9 C 1.46906 * 110.99380 * 159.92852 * 8 7 6 10 10 C 1.53001 * 109.47333 * 288.41227 * 9 8 7 11 11 C 1.50698 * 115.54987 * 300.45342 * 10 9 8 12 12 H 1.08001 * 120.00054 * 0.40819 * 11 10 9 13 13 C 1.37871 * 119.99593 * 180.13518 * 11 10 9 14 14 N 1.31515 * 120.00573 * 0.27447 * 13 11 10 15 15 Si 1.86806 * 119.99573 * 180.27350 * 13 11 10 16 16 H 1.48496 * 109.47477 * 60.00026 * 15 13 11 17 17 H 1.48507 * 109.46876 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47095 * 299.99534 * 15 13 11 19 19 C 1.53002 * 117.49699 * 86.12044 * 10 9 8 20 20 C 1.52996 * 117.49843 * 154.77880 * 10 9 8 21 21 C 1.46900 * 111.00136 * 283.87890 * 8 7 6 22 22 C 1.52990 * 109.47377 * 292.43326 * 21 8 7 23 23 C 1.52995 * 109.46816 * 52.43864 * 21 8 7 24 24 C 1.53001 * 109.47007 * 172.43332 * 21 8 7 25 25 C 1.38267 * 120.11136 * 0.24806 * 6 5 4 26 26 C 1.38151 * 120.05280 * 359.45825 * 25 6 5 27 27 H 1.09002 * 109.47525 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47121 * 300.00046 * 1 2 3 29 29 H 1.09002 * 109.47557 * 59.99551 * 1 2 3 30 30 H 1.07995 * 120.02587 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.97650 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47033 * 12.84390 * 7 6 5 33 33 H 1.08999 * 109.46700 * 252.84561 * 7 6 5 34 34 H 1.09003 * 109.46859 * 168.41027 * 9 8 7 35 35 H 1.08996 * 109.47287 * 48.41774 * 9 8 7 36 36 H 0.96999 * 120.00221 * 180.02562 * 14 13 11 37 37 H 1.08992 * 117.49731 * 215.00756 * 19 10 9 38 38 H 1.09000 * 117.49458 * 0.02635 * 19 10 9 39 39 H 1.09004 * 117.50133 * 359.97438 * 20 10 9 40 40 H 1.09000 * 117.50221 * 144.97109 * 20 10 9 41 41 H 1.08999 * 109.47188 * 59.91346 * 22 21 8 42 42 H 1.09003 * 109.47295 * 179.91232 * 22 21 8 43 43 H 1.08998 * 109.47823 * 299.91181 * 22 21 8 44 44 H 1.09003 * 109.47408 * 49.42819 * 23 21 8 45 45 H 1.08999 * 109.47385 * 169.43298 * 23 21 8 46 46 H 1.09003 * 109.46832 * 289.43292 * 23 21 8 47 47 H 1.09000 * 109.46895 * 66.61727 * 24 21 8 48 48 H 1.09000 * 109.47204 * 186.61987 * 24 21 8 49 49 H 1.09007 * 109.47189 * 306.62163 * 24 21 8 50 50 H 1.07998 * 119.97217 * 179.70403 * 25 6 5 51 51 H 1.07999 * 120.02772 * 180.25317 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3019 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 7 3.3687 5.8835 -1.0115 9 6 3.6518 7.2990 -0.7390 10 6 2.8535 7.7525 0.4849 11 6 1.3565 7.6250 0.3682 12 1 0.9171 7.2281 -0.5350 13 6 0.5481 8.0098 1.4167 14 7 1.0831 8.4931 2.5166 15 14 -1.3072 7.8446 1.2750 16 1 -1.6618 6.4198 1.0527 17 1 -1.9439 8.3230 2.5284 18 1 -1.7907 8.6593 0.1315 19 6 3.4774 7.5172 1.8620 20 6 3.4015 8.9340 1.2877 21 6 3.8096 5.5089 -2.3618 22 6 5.2981 5.8254 -2.5184 23 6 3.5812 4.0112 -2.5756 24 6 3.0082 6.2999 -3.3977 25 6 1.9210 3.6048 0.0079 26 6 1.2914 2.3751 0.0012 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 4.0208 0.3800 -0.0014 31 1 5.1345 2.5751 0.0000 32 1 5.0436 4.8877 -0.2263 33 1 3.8813 5.4788 0.9853 34 1 3.3655 7.8995 -1.6025 35 1 4.7169 7.4258 -0.5455 36 1 0.5144 8.7635 3.2544 37 1 2.8050 7.2702 2.6835 38 1 4.4567 7.0397 1.8959 39 1 4.3310 9.3881 0.9441 40 1 2.6793 9.6195 1.7310 41 1 5.8689 5.2630 -1.7795 42 1 5.6256 5.5459 -3.5199 43 1 5.4606 6.8926 -2.3677 44 1 2.5635 3.7533 -2.2825 45 1 3.7291 3.7677 -3.6276 46 1 4.2884 3.4457 -1.9688 47 1 3.2608 7.3575 -3.3220 48 1 3.2504 5.9390 -4.3973 49 1 1.9424 6.1667 -3.2116 50 1 1.3342 4.5114 0.0139 51 1 0.2129 2.3202 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653787364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:55 Heat of formation + Delta-G solvation = 34.204758 kcal Electronic energy + Delta-G solvation = -28691.719895 eV Core-core repulsion = 25172.116499 eV Total energy + Delta-G solvation = -3519.603396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.15816 -39.01847 -37.03058 -36.05834 -32.35091 -31.46339 -30.71695 -30.30667 -27.74731 -27.10130 -26.67855 -25.94458 -24.91088 -23.48283 -22.21749 -21.04306 -20.42458 -18.93269 -18.15898 -17.89088 -16.14085 -15.91701 -15.70905 -15.53897 -14.94489 -14.86600 -14.23081 -13.97635 -13.84178 -13.59733 -13.31705 -13.17124 -13.07681 -12.80147 -12.46662 -12.22337 -11.91070 -11.81978 -11.65541 -11.42119 -11.36684 -11.28806 -11.00562 -10.91624 -10.68757 -10.62055 -10.60067 -10.53607 -10.35370 -10.09288 -10.03881 -9.87448 -9.38440 -8.76532 -8.57941 -8.21376 -7.97693 -7.61569 -7.46777 -5.86609 -3.88696 1.67883 1.81743 3.33437 3.38915 3.41300 3.42125 4.08075 4.46261 4.50293 5.02998 5.14245 5.16731 5.17412 5.23189 5.25993 5.29811 5.39356 5.46212 5.54496 5.70652 5.72682 5.78434 5.83378 5.91279 5.95458 6.06618 6.09599 6.12009 6.21482 6.21904 6.24725 6.37059 6.38285 6.45388 6.49921 6.62011 6.63131 6.68423 6.73105 6.79574 6.84487 7.08452 7.11443 7.14482 7.27748 7.37917 7.62903 7.76263 7.87128 7.96179 8.13969 8.28816 8.64335 9.08488 9.64809 11.09788 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.005628 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.732037 B = 4973.499716 C = 6467.610561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.325 6.325 3 C 0.110 3.890 4 C -0.158 4.158 5 C -0.091 4.091 6 C -0.086 4.086 7 C 0.086 3.914 8 N -0.499 5.499 9 C 0.099 3.901 10 C 0.030 3.970 11 C -0.446 4.446 12 H 0.064 0.936 13 C 0.054 3.946 14 N -0.885 5.885 15 Si 0.890 3.110 16 H -0.278 1.278 17 H -0.291 1.291 18 H -0.279 1.279 19 C -0.192 4.192 20 C -0.191 4.191 21 C 0.101 3.899 22 C -0.179 4.179 23 C -0.145 4.145 24 C -0.135 4.135 25 C -0.044 4.044 26 C -0.211 4.211 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.032 0.968 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.012 0.988 36 H 0.256 0.744 37 H 0.108 0.892 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.110 0.890 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.043 0.957 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.048 0.952 49 H 0.065 0.935 50 H 0.145 0.855 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.994 -11.634 -7.359 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.239 6.239 3 C 0.065 3.935 4 C -0.177 4.177 5 C -0.110 4.110 6 C -0.087 4.087 7 C -0.041 4.041 8 N -0.221 5.221 9 C -0.028 4.028 10 C 0.029 3.971 11 C -0.484 4.484 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.524 5.524 15 Si 0.719 3.281 16 H -0.204 1.204 17 H -0.217 1.217 18 H -0.205 1.205 19 C -0.230 4.230 20 C -0.229 4.229 21 C 0.012 3.988 22 C -0.238 4.238 23 C -0.202 4.202 24 C -0.192 4.192 25 C -0.062 4.062 26 C -0.229 4.229 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.050 0.950 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.030 0.970 36 H 0.066 0.934 37 H 0.126 0.874 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.128 0.872 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.084 0.916 50 H 0.163 0.837 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.483 -11.812 -7.168 14.248 hybrid contribution -0.305 0.216 0.086 0.384 sum 3.178 -11.595 -7.082 13.954 Atomic orbital electron populations 1.22977 0.78885 1.03258 1.01470 1.85999 1.21004 1.27586 1.89323 1.18979 0.92294 0.83850 0.98362 1.20176 0.91193 0.98067 1.08271 1.20749 0.99211 0.91298 0.99712 1.19815 0.94013 0.94426 1.00463 1.21191 0.93964 0.90543 0.98411 1.62081 1.57517 1.03179 0.99358 1.21670 0.95070 0.87089 0.98964 1.18935 0.93713 0.97682 0.86775 1.20472 0.88596 1.38822 1.00480 0.91782 1.25000 0.98290 0.95709 0.95610 1.70002 1.34072 1.43288 1.05022 0.86690 0.86062 0.78346 0.77021 1.20405 1.21677 1.20520 1.22824 0.98042 0.99400 1.02727 1.22844 0.99483 0.92935 1.07676 1.21070 0.91888 0.95346 0.90541 1.22501 0.98298 1.01728 1.01268 1.22305 1.02996 0.94709 1.00166 1.21843 1.01193 0.99613 0.96583 1.21089 0.94461 0.97373 0.93321 1.21283 0.99741 0.92516 1.09396 0.88791 0.92735 0.92807 0.86135 0.86228 0.94961 0.87789 0.91419 0.97022 0.93358 0.87418 0.94454 0.94448 0.87169 0.92845 0.92898 0.92470 0.91337 0.93819 0.91965 0.92661 0.93347 0.91558 0.83723 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.33 -4.47 10.50 -19.43 -0.20 -4.68 16 3 C 0.11 1.63 6.69 -39.22 -0.26 1.37 16 4 C -0.16 -2.23 9.99 -39.43 -0.39 -2.62 16 5 C -0.09 -1.29 7.73 -39.60 -0.31 -1.59 16 6 C -0.09 -1.39 3.12 -104.60 -0.33 -1.71 16 7 C 0.09 1.47 4.67 -4.98 -0.02 1.45 16 8 N -0.50 -8.73 3.62 -220.41 -0.80 -9.53 16 9 C 0.10 1.94 3.68 -3.82 -0.01 1.92 16 10 C 0.03 0.69 1.99 -155.66 -0.31 0.39 16 11 C -0.45 -11.46 8.99 -34.44 -0.31 -11.77 16 12 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 13 C 0.05 1.42 5.27 -17.82 -0.09 1.33 16 14 N -0.88 -24.09 8.59 55.43 0.48 -23.62 16 15 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.19 -4.57 7.68 -26.69 -0.21 -4.78 16 20 C -0.19 -4.62 9.37 -26.70 -0.25 -4.87 16 21 C 0.10 1.51 0.71 -131.61 -0.09 1.42 16 22 C -0.18 -2.43 7.80 37.15 0.29 -2.14 16 23 C -0.14 -2.05 6.95 37.16 0.26 -1.79 16 24 C -0.13 -1.96 8.20 37.16 0.30 -1.66 16 25 C -0.04 -0.76 7.85 -39.60 -0.31 -1.07 16 26 C -0.21 -3.25 9.04 -39.43 -0.36 -3.61 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 29 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 30 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 31 H 0.12 1.45 7.98 -52.49 -0.42 1.03 16 32 H 0.03 0.51 5.81 -51.93 -0.30 0.21 16 33 H 0.10 2.04 4.68 -51.93 -0.24 1.80 16 34 H 0.07 1.32 5.94 -51.93 -0.31 1.02 16 35 H 0.01 0.22 7.09 -51.93 -0.37 -0.15 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.11 2.88 6.31 -51.93 -0.33 2.55 16 38 H 0.04 0.82 7.25 -51.93 -0.38 0.44 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 2.96 6.26 -51.93 -0.33 2.64 16 41 H 0.05 0.72 6.34 -51.93 -0.33 0.39 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.81 6.71 -51.93 -0.35 0.46 16 44 H 0.07 1.07 6.11 -51.93 -0.32 0.75 16 45 H 0.04 0.56 8.06 -51.93 -0.42 0.14 16 46 H 0.06 0.86 4.83 -51.93 -0.25 0.61 16 47 H 0.05 0.82 6.51 -51.93 -0.34 0.48 16 48 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 49 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.15 2.85 7.94 -52.49 -0.42 2.43 16 51 H 0.12 1.69 6.30 -52.49 -0.33 1.36 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -26.94 377.40 -9.56 -36.50 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -8.29 Total: 8.28 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: -1.41 Total: -28.45 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: -0.32 Total: -33.15 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.20 Total: -4.68 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -26.94 -9.56 -36.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653787364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.705 kcal (2) G-P(sol) polarization free energy of solvation -26.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds