Wall clock time and date at job start Tue Mar 31 2020 12:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 117.00017 * 2 1 4 4 C 1.38732 * 120.05580 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94416 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05689 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94562 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.46779 * 132.84380 * 7 6 5 9 9 C 1.46906 * 110.99380 * 159.92852 * 8 7 6 10 10 C 1.53001 * 109.47333 * 288.41227 * 9 8 7 11 11 C 1.50698 * 115.54987 * 300.45342 * 10 9 8 12 12 H 1.08001 * 120.00054 * 0.40819 * 11 10 9 13 13 C 1.37871 * 119.99593 * 180.13518 * 11 10 9 14 14 N 1.31515 * 120.00573 * 0.27447 * 13 11 10 15 15 Si 1.86806 * 119.99573 * 180.27350 * 13 11 10 16 16 H 1.48496 * 109.47477 * 60.00026 * 15 13 11 17 17 H 1.48507 * 109.46876 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47095 * 299.99534 * 15 13 11 19 19 C 1.53002 * 117.49699 * 86.12044 * 10 9 8 20 20 C 1.52996 * 117.49843 * 154.77880 * 10 9 8 21 21 C 1.46900 * 111.00136 * 283.87890 * 8 7 6 22 22 C 1.52990 * 109.47377 * 292.43326 * 21 8 7 23 23 C 1.52995 * 109.46816 * 52.43864 * 21 8 7 24 24 C 1.53001 * 109.47007 * 172.43332 * 21 8 7 25 25 C 1.38267 * 120.11136 * 0.24806 * 6 5 4 26 26 C 1.38151 * 120.05280 * 359.45825 * 25 6 5 27 27 H 1.09002 * 109.47525 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47121 * 300.00046 * 1 2 3 29 29 H 1.09002 * 109.47557 * 59.99551 * 1 2 3 30 30 H 1.07995 * 120.02587 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.97650 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47033 * 12.84390 * 7 6 5 33 33 H 1.08999 * 109.46700 * 252.84561 * 7 6 5 34 34 H 1.09003 * 109.46859 * 168.41027 * 9 8 7 35 35 H 1.08996 * 109.47287 * 48.41774 * 9 8 7 36 36 H 0.96999 * 120.00221 * 180.02562 * 14 13 11 37 37 H 1.08992 * 117.49731 * 215.00756 * 19 10 9 38 38 H 1.09000 * 117.49458 * 0.02635 * 19 10 9 39 39 H 1.09004 * 117.50133 * 359.97438 * 20 10 9 40 40 H 1.09000 * 117.50221 * 144.97109 * 20 10 9 41 41 H 1.08999 * 109.47188 * 59.91346 * 22 21 8 42 42 H 1.09003 * 109.47295 * 179.91232 * 22 21 8 43 43 H 1.08998 * 109.47823 * 299.91181 * 22 21 8 44 44 H 1.09003 * 109.47408 * 49.42819 * 23 21 8 45 45 H 1.08999 * 109.47385 * 169.43298 * 23 21 8 46 46 H 1.09003 * 109.46832 * 289.43292 * 23 21 8 47 47 H 1.09000 * 109.46895 * 66.61727 * 24 21 8 48 48 H 1.09000 * 109.47204 * 186.61987 * 24 21 8 49 49 H 1.09007 * 109.47189 * 306.62163 * 24 21 8 50 50 H 1.07998 * 119.97217 * 179.70403 * 25 6 5 51 51 H 1.07999 * 120.02772 * 180.25317 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3019 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 7 3.3687 5.8835 -1.0115 9 6 3.6518 7.2990 -0.7390 10 6 2.8535 7.7525 0.4849 11 6 1.3565 7.6250 0.3682 12 1 0.9171 7.2281 -0.5350 13 6 0.5481 8.0098 1.4167 14 7 1.0831 8.4931 2.5166 15 14 -1.3072 7.8446 1.2750 16 1 -1.6618 6.4198 1.0527 17 1 -1.9439 8.3230 2.5284 18 1 -1.7907 8.6593 0.1315 19 6 3.4774 7.5172 1.8620 20 6 3.4015 8.9340 1.2877 21 6 3.8096 5.5089 -2.3618 22 6 5.2981 5.8254 -2.5184 23 6 3.5812 4.0112 -2.5756 24 6 3.0082 6.2999 -3.3977 25 6 1.9210 3.6048 0.0079 26 6 1.2914 2.3751 0.0012 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 4.0208 0.3800 -0.0014 31 1 5.1345 2.5751 0.0000 32 1 5.0436 4.8877 -0.2263 33 1 3.8813 5.4788 0.9853 34 1 3.3655 7.8995 -1.6025 35 1 4.7169 7.4258 -0.5455 36 1 0.5144 8.7635 3.2544 37 1 2.8050 7.2702 2.6835 38 1 4.4567 7.0397 1.8959 39 1 4.3310 9.3881 0.9441 40 1 2.6793 9.6195 1.7310 41 1 5.8689 5.2630 -1.7795 42 1 5.6256 5.5459 -3.5199 43 1 5.4606 6.8926 -2.3677 44 1 2.5635 3.7533 -2.2825 45 1 3.7291 3.7677 -3.6276 46 1 4.2884 3.4457 -1.9688 47 1 3.2608 7.3575 -3.3220 48 1 3.2504 5.9390 -4.3973 49 1 1.9424 6.1667 -3.2116 50 1 1.3342 4.5114 0.0139 51 1 0.2129 2.3202 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653787364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:54 Heat of formation + Delta-G solvation = 21.940236 kcal Electronic energy + Delta-G solvation = -28692.251725 eV Core-core repulsion = 25172.116499 eV Total energy + Delta-G solvation = -3520.135226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.34194 -40.24818 -38.37652 -37.63271 -33.88208 -33.13757 -31.88635 -31.67260 -28.84905 -28.20388 -27.76111 -27.69020 -26.45318 -24.87749 -23.38280 -22.71607 -21.84436 -20.77079 -19.43189 -18.97123 -17.91202 -17.21227 -16.91179 -16.77244 -16.54449 -16.18170 -15.62897 -15.34954 -15.05155 -14.87131 -14.76958 -14.51861 -14.33186 -14.06846 -13.77296 -13.60551 -13.14514 -13.03340 -12.92331 -12.78651 -12.69537 -12.57996 -12.52959 -12.46311 -12.31093 -12.09912 -12.01628 -11.86279 -11.82227 -11.66969 -11.49136 -11.32576 -11.17406 -10.69219 -10.10619 -9.93349 -9.74831 -8.84423 -8.75872 -7.90259 -5.96951 0.51812 0.62314 1.43140 1.44075 1.50523 2.45799 2.48541 2.86126 3.07283 3.31116 3.97045 4.03319 4.05414 4.08926 4.14643 4.16734 4.35512 4.38857 4.40873 4.46931 4.53718 4.60881 4.63506 4.70222 4.71519 4.77377 4.81401 4.84031 4.88926 4.92940 4.94337 5.01423 5.10127 5.11932 5.15097 5.24242 5.28234 5.31877 5.40047 5.44932 5.52231 5.54490 5.57523 5.63226 5.74758 5.91047 5.94611 6.04559 6.27299 6.46490 6.54641 6.64456 6.67293 7.05628 7.58317 9.03489 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.005628 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.732037 B = 4973.499716 C = 6467.610561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.333 6.333 3 C 0.108 3.892 4 C -0.157 4.157 5 C -0.082 4.082 6 C -0.094 4.094 7 C 0.092 3.908 8 N -0.511 5.511 9 C 0.112 3.888 10 C 0.027 3.973 11 C -0.452 4.452 12 H 0.056 0.944 13 C 0.010 3.990 14 N -0.905 5.905 15 Si 0.942 3.058 16 H -0.276 1.276 17 H -0.293 1.293 18 H -0.276 1.276 19 C -0.183 4.183 20 C -0.196 4.196 21 C 0.099 3.901 22 C -0.173 4.173 23 C -0.137 4.137 24 C -0.132 4.132 25 C -0.061 4.061 26 C -0.217 4.217 27 H 0.123 0.877 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.020 0.980 36 H 0.251 0.749 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.048 0.952 48 H 0.072 0.928 49 H 0.045 0.955 50 H 0.109 0.891 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 -13.710 -8.923 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.248 6.248 3 C 0.063 3.937 4 C -0.175 4.175 5 C -0.101 4.101 6 C -0.095 4.095 7 C -0.036 4.036 8 N -0.235 5.235 9 C -0.015 4.015 10 C 0.026 3.974 11 C -0.490 4.490 12 H 0.075 0.925 13 C -0.188 4.188 14 N -0.545 5.545 15 Si 0.770 3.230 16 H -0.201 1.201 17 H -0.219 1.219 18 H -0.201 1.201 19 C -0.220 4.220 20 C -0.235 4.235 21 C 0.010 3.990 22 C -0.232 4.232 23 C -0.194 4.194 24 C -0.190 4.190 25 C -0.080 4.080 26 C -0.236 4.236 27 H 0.141 0.859 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.064 0.936 50 H 0.127 0.873 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.713 -13.895 -8.744 17.081 hybrid contribution -0.737 0.794 0.563 1.220 sum 3.976 -13.102 -8.182 15.950 Atomic orbital electron populations 1.23247 0.77140 1.05275 1.01664 1.85994 1.22836 1.26857 1.89068 1.19117 0.92838 0.83945 0.97799 1.20495 0.91109 0.98894 1.07039 1.20954 1.00350 0.90421 0.98341 1.19738 0.93556 0.94712 1.01457 1.21069 0.95060 0.90684 0.96749 1.61977 1.58523 1.02014 1.00945 1.21417 0.94655 0.88550 0.96910 1.19074 0.93193 0.96957 0.88178 1.20681 0.90205 1.38140 0.99994 0.92542 1.25604 1.01681 0.95901 0.95566 1.70162 1.34828 1.44172 1.05362 0.85856 0.82151 0.78262 0.76736 1.20109 1.21902 1.20143 1.22596 0.98317 0.99235 1.01900 1.22739 0.99788 0.92674 1.08269 1.21166 0.93045 0.95960 0.88837 1.22424 0.96797 1.01315 1.02633 1.22216 1.01953 0.93928 1.01300 1.21828 0.99864 0.99388 0.97900 1.20820 0.94984 0.96656 0.95498 1.21316 1.00284 0.92331 1.09629 0.85926 0.92792 0.92381 0.83861 0.83622 0.93137 0.90805 0.91564 0.96194 0.93897 0.90692 0.92421 0.92296 0.90165 0.92515 0.90845 0.93191 0.93256 0.92041 0.91462 0.93262 0.90883 0.93613 0.87321 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.33 -8.49 10.50 -92.43 -0.97 -9.46 16 3 C 0.11 3.03 6.69 22.51 0.15 3.18 16 4 C -0.16 -4.00 9.99 22.37 0.22 -3.77 16 5 C -0.08 -2.12 7.73 22.25 0.17 -1.95 16 6 C -0.09 -2.94 3.12 -19.85 -0.06 -3.00 16 7 C 0.09 3.06 4.67 85.56 0.40 3.46 16 8 N -0.51 -17.72 3.62 -851.24 -3.08 -20.80 16 9 C 0.11 4.35 3.68 86.30 0.32 4.67 16 10 C 0.03 1.27 1.99 -52.93 -0.11 1.17 16 11 C -0.45 -23.94 8.99 25.60 0.23 -23.71 16 12 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 13 C 0.01 0.55 5.27 84.65 0.45 0.99 16 14 N -0.91 -51.12 8.59 21.45 0.18 -50.93 16 15 Si 0.94 43.92 29.54 68.60 2.03 45.95 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 C -0.18 -8.87 7.68 30.62 0.24 -8.63 16 20 C -0.20 -9.64 9.37 30.62 0.29 -9.35 16 21 C 0.10 2.79 0.71 3.52 0.00 2.79 16 22 C -0.17 -4.19 7.80 71.98 0.56 -3.62 16 23 C -0.14 -3.58 6.95 71.98 0.50 -3.08 16 24 C -0.13 -3.68 8.20 71.98 0.59 -3.09 16 25 C -0.06 -2.13 7.85 22.26 0.17 -1.95 16 26 C -0.22 -6.65 9.04 22.37 0.20 -6.45 16 27 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.00 7.66 -2.39 -0.02 0.98 16 29 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 30 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.15 2.97 7.98 -2.91 -0.02 2.95 16 32 H 0.05 1.47 5.81 -2.39 -0.01 1.46 16 33 H 0.07 2.92 4.68 -2.39 -0.01 2.90 16 34 H 0.07 2.57 5.94 -2.39 -0.01 2.56 16 35 H 0.02 0.74 7.09 -2.39 -0.02 0.72 16 36 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 37 H 0.07 4.17 6.31 -2.39 -0.02 4.15 16 38 H 0.06 2.53 7.25 -2.39 -0.02 2.51 16 39 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 40 H 0.08 4.46 6.26 -2.39 -0.01 4.44 16 41 H 0.06 1.33 6.34 -2.39 -0.02 1.32 16 42 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.05 1.28 6.71 -2.39 -0.02 1.27 16 44 H 0.05 1.49 6.11 -2.39 -0.01 1.48 16 45 H 0.06 1.38 8.06 -2.39 -0.02 1.36 16 46 H 0.07 1.67 4.83 -2.39 -0.01 1.66 16 47 H 0.05 1.41 6.51 -2.39 -0.02 1.39 16 48 H 0.07 1.64 8.08 -2.39 -0.02 1.63 16 49 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 50 H 0.11 4.55 7.94 -2.91 -0.02 4.53 16 51 H 0.13 3.58 6.30 -2.91 -0.02 3.56 16 Total: -1.00 -59.44 377.40 4.51 -54.93 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.91 Total: 31.17 kcal Atomic # 6 Polarization: -56.30 SS G_CDS: 5.44 Total: -50.86 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -2.90 Total: -71.73 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.97 Total: -9.46 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -59.44 4.51 -54.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653787364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.867 kcal (2) G-P(sol) polarization free energy of solvation -59.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds