Wall clock time and date at job start Tue Mar 31 2020 12:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47007 * 2 1 4 4 N 1.46902 * 109.47426 * 239.99888 * 2 1 3 5 5 C 1.46897 * 111.00277 * 150.73831 * 4 2 1 6 6 C 1.53005 * 109.47205 * 279.56501 * 5 4 2 7 7 H 1.09004 * 109.46950 * 59.99942 * 6 5 4 8 8 C 1.53001 * 109.47146 * 300.00243 * 6 5 4 9 9 C 1.52998 * 109.47107 * 179.97438 * 6 5 4 10 10 C 1.53004 * 109.46772 * 60.00580 * 9 6 5 11 11 C 1.53005 * 109.46831 * 299.99589 * 10 9 6 12 12 C 1.52996 * 109.47143 * 60.00225 * 11 10 9 13 13 H 1.08994 * 109.46814 * 60.00046 * 12 11 10 14 14 C 1.53005 * 109.47143 * 179.97438 * 12 11 10 15 15 C 1.50699 * 109.47234 * 120.00112 * 2 1 3 16 16 C 1.38308 * 119.93045 * 259.99967 * 15 2 1 17 17 C 1.38095 * 120.06924 * 180.02562 * 16 15 2 18 18 C 1.38878 * 119.93358 * 359.97438 * 17 16 15 19 19 O 1.35746 * 120.06921 * 180.02562 * 18 17 16 20 20 C 1.34830 * 117.00394 * 5.77176 * 19 18 17 21 21 H 1.08004 * 119.99880 * 354.92146 * 20 19 18 22 22 C 1.38652 * 120.00067 * 175.19590 * 20 19 18 23 23 N 1.31552 * 120.00107 * 359.72655 * 22 20 19 24 24 Si 1.86800 * 119.99591 * 179.72487 * 22 20 19 25 25 H 1.48497 * 109.47112 * 60.00458 * 24 22 20 26 26 H 1.48508 * 109.46733 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47690 * 300.00133 * 24 22 20 28 28 C 1.38879 * 119.85859 * 0.27474 * 18 17 16 29 29 C 1.38100 * 119.93198 * 359.49848 * 28 18 17 30 30 H 1.08999 * 109.47624 * 64.97362 * 1 2 3 31 31 H 1.09001 * 109.47264 * 184.96964 * 1 2 3 32 32 H 1.08998 * 109.47660 * 304.96762 * 1 2 3 33 33 H 1.00895 * 111.00045 * 274.69295 * 4 2 1 34 34 H 1.08998 * 109.47231 * 39.56665 * 5 4 2 35 35 H 1.08998 * 109.46926 * 59.99450 * 8 6 5 36 36 H 1.08997 * 109.47026 * 179.97438 * 8 6 5 37 37 H 1.09004 * 109.46950 * 299.99698 * 8 6 5 38 38 H 1.08998 * 109.47611 * 300.00337 * 9 6 5 39 39 H 1.08998 * 109.47011 * 179.97438 * 9 6 5 40 40 H 1.09006 * 109.46946 * 180.02562 * 10 9 6 41 41 H 1.08994 * 109.47643 * 59.99859 * 10 9 6 42 42 H 1.08998 * 109.47160 * 300.00003 * 11 10 9 43 43 H 1.09004 * 109.46950 * 180.02562 * 11 10 9 44 44 H 1.08997 * 109.47110 * 180.02562 * 14 12 11 45 45 H 1.09004 * 109.46950 * 300.00044 * 14 12 11 46 46 H 1.08998 * 109.47160 * 59.99778 * 14 12 11 47 47 H 1.08008 * 119.96247 * 359.97438 * 16 15 2 48 48 H 1.08003 * 120.03089 * 179.97438 * 17 16 15 49 49 H 0.97003 * 119.99770 * 179.97438 * 23 22 20 50 50 H 1.08008 * 120.03359 * 179.72036 * 28 18 17 51 51 H 1.07998 * 119.96571 * 180.22706 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.3231 -0.1608 -1.6190 6 6 3.1162 1.1370 -2.4027 7 1 2.6126 1.8674 -1.7694 8 6 2.2585 0.8556 -3.6380 9 6 4.4739 1.6912 -2.8392 10 6 5.1812 0.6661 -3.7279 11 6 5.3881 -0.6317 -2.9443 12 6 4.0305 -1.1858 -2.5077 13 1 3.4198 -1.3863 -3.3880 14 6 4.2373 -2.4839 -1.7247 15 6 2.0323 -0.7104 1.2304 16 6 2.4586 0.0212 2.3240 17 6 2.9199 -0.6268 3.4528 18 6 2.9552 -2.0147 3.4894 19 8 3.4077 -2.6545 4.5978 20 6 3.6952 -1.8908 5.6711 21 1 3.6409 -0.8146 5.5982 22 6 4.0662 -2.4868 6.8668 23 7 4.1324 -3.7977 6.9556 24 14 4.4720 -1.4283 8.3514 25 1 3.2887 -0.6069 8.7121 26 1 4.8359 -2.3009 9.4968 27 1 5.6135 -0.5359 8.0262 28 6 2.5313 -2.7464 2.3878 29 6 2.0666 -2.0926 1.2636 30 1 -0.3634 0.4347 -0.9311 31 1 -0.3634 -1.0238 0.0890 32 1 -0.3634 0.5889 0.8421 33 1 2.0675 -1.6888 -1.0475 34 1 3.9342 0.0397 -0.7390 35 1 1.2914 0.4610 -3.3266 36 1 2.1107 1.7802 -4.1960 37 1 2.7621 0.1252 -4.2713 38 1 5.0846 1.8917 -1.9589 39 1 4.3264 2.6154 -3.3978 40 1 6.1487 1.0607 -4.0386 41 1 4.5706 0.4656 -4.6082 42 1 5.9988 -0.4312 -2.0641 43 1 5.8924 -1.3619 -3.5773 44 1 3.2701 -2.8789 -1.4141 45 1 4.7411 -3.2140 -2.3582 46 1 4.8482 -2.2838 -0.8444 47 1 2.4313 1.1006 2.2948 48 1 3.2531 -0.0549 4.3063 49 1 4.3922 -4.2146 7.7920 50 1 2.5617 -3.8258 2.4115 51 1 1.7334 -2.6611 0.4080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181588310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:01 Heat of formation + Delta-G solvation = -28.926278 kcal Electronic energy + Delta-G solvation = -27580.682583 eV Core-core repulsion = 24058.341620 eV Total energy + Delta-G solvation = -3522.340963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.07973 -39.00789 -37.19720 -34.88893 -33.30734 -32.33217 -31.57120 -30.26615 -28.82887 -27.96301 -26.54180 -25.71288 -25.40755 -22.80393 -22.12081 -21.56553 -21.06381 -19.81158 -18.56080 -17.96398 -17.05028 -16.22508 -15.44487 -15.08558 -14.77842 -14.73137 -14.52995 -14.14830 -13.95630 -13.72215 -13.52371 -13.25366 -13.04724 -12.76195 -12.69751 -12.62513 -12.38073 -12.27169 -11.97516 -11.82546 -11.70461 -11.64327 -11.38052 -11.25805 -11.18674 -11.00955 -10.85522 -10.78960 -10.63178 -10.51633 -10.42029 -10.28463 -10.10234 -9.84011 -9.36831 -8.84543 -8.27894 -8.18046 -7.19033 -6.47360 -4.06416 2.16673 2.28297 3.11124 3.12202 3.15015 3.94431 4.23701 4.52198 4.58004 4.64580 4.80453 5.02853 5.06104 5.15043 5.20124 5.27570 5.28420 5.32628 5.36516 5.43766 5.49427 5.55661 5.65840 5.67784 5.71962 5.75886 5.78580 5.84101 5.85532 5.94075 5.98633 6.03171 6.06505 6.10330 6.14833 6.15757 6.20022 6.26081 6.35072 6.37735 6.39300 6.44376 6.54628 6.66049 6.85539 7.01044 7.11861 7.24267 7.39935 7.46140 7.60542 7.78949 7.97368 8.98175 9.68067 10.70579 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018620 B = 0.002996 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.379920 B = 9344.568416 C = 9637.472571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.138 3.862 3 H 0.071 0.929 4 N -0.680 5.680 5 C 0.099 3.901 6 C -0.079 4.079 7 H 0.065 0.935 8 C -0.138 4.138 9 C -0.116 4.116 10 C -0.120 4.120 11 C -0.113 4.113 12 C -0.091 4.091 13 H 0.078 0.922 14 C -0.153 4.153 15 C -0.207 4.207 16 C -0.065 4.065 17 C -0.232 4.232 18 C 0.154 3.846 19 O -0.178 6.178 20 C -0.393 4.393 21 H 0.091 0.909 22 C 0.040 3.960 23 N -0.863 5.863 24 Si 0.940 3.060 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.189 4.189 29 C -0.071 4.071 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.342 0.658 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.104 0.896 48 H 0.125 0.875 49 H 0.271 0.729 50 H 0.115 0.885 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 8.417 -19.217 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.028 3.972 3 H 0.090 0.910 4 N -0.313 5.313 5 C -0.011 4.011 6 C -0.098 4.098 7 H 0.083 0.917 8 C -0.195 4.195 9 C -0.154 4.154 10 C -0.157 4.157 11 C -0.151 4.151 12 C -0.109 4.109 13 H 0.096 0.904 14 C -0.211 4.211 15 C -0.209 4.209 16 C -0.084 4.084 17 C -0.251 4.251 18 C 0.100 3.900 19 O -0.081 6.081 20 C -0.469 4.469 21 H 0.108 0.892 22 C -0.164 4.164 23 N -0.498 5.498 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.208 4.208 29 C -0.090 4.090 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.165 0.835 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.122 0.878 48 H 0.143 0.857 49 H 0.081 0.919 50 H 0.133 0.867 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.678 8.369 -19.415 21.208 hybrid contribution 0.848 0.185 1.654 1.868 sum -0.830 8.554 -17.761 19.731 Atomic orbital electron populations 1.21736 0.94541 1.01783 1.00822 1.20279 0.94828 0.96578 0.85468 0.91043 1.60860 1.26774 1.09264 1.34410 1.21449 0.89452 0.93985 0.96227 1.21058 0.95226 0.96356 0.97134 0.91700 1.21776 1.00702 1.00276 0.96728 1.21581 0.96378 0.97961 0.99471 1.21563 0.99976 0.95544 0.98634 1.21568 0.96769 0.96751 0.99985 1.21253 0.96231 0.94643 0.98813 0.90377 1.21911 1.01812 0.96929 1.00398 1.19962 1.09466 0.93855 0.97648 1.20593 0.96996 0.98124 0.92653 1.21153 1.09526 0.94420 1.00003 1.19375 0.91320 0.90907 0.88423 1.83974 1.70755 1.35336 1.18064 1.21270 1.47516 0.90727 0.87398 0.89180 1.25279 0.96736 0.96294 0.98136 1.70026 1.43980 1.08672 1.27075 0.85794 0.79200 0.78929 0.79593 1.19477 1.20234 1.19501 1.20166 1.08005 0.99291 0.93362 1.20312 0.98701 0.93458 0.96482 0.92608 0.92877 0.92829 0.83488 0.93719 0.91383 0.94158 0.92810 0.92238 0.92208 0.92464 0.91712 0.92024 0.92096 0.92459 0.92685 0.92400 0.87779 0.85692 0.91946 0.86653 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 9.50 37.15 0.35 -1.27 16 2 C 0.14 1.83 2.62 -68.87 -0.18 1.65 16 3 H 0.07 0.95 6.65 -51.93 -0.35 0.61 16 4 N -0.68 -8.14 5.29 -100.96 -0.53 -8.67 16 5 C 0.10 1.13 1.51 -67.71 -0.10 1.03 16 6 C -0.08 -0.81 2.74 -90.62 -0.25 -1.05 16 7 H 0.06 0.72 7.15 -51.93 -0.37 0.34 16 8 C -0.14 -1.31 8.34 37.16 0.31 -1.00 16 9 C -0.12 -1.07 5.45 -26.73 -0.15 -1.22 16 10 C -0.12 -1.03 5.65 -26.73 -0.15 -1.18 16 11 C -0.11 -1.07 5.20 -26.73 -0.14 -1.21 16 12 C -0.09 -0.94 2.13 -90.62 -0.19 -1.13 16 13 H 0.08 0.80 6.43 -51.93 -0.33 0.46 16 14 C -0.15 -1.70 8.94 37.16 0.33 -1.36 16 15 C -0.21 -3.40 4.82 -104.57 -0.50 -3.90 16 16 C -0.06 -1.17 9.66 -39.61 -0.38 -1.56 16 17 C -0.23 -5.01 9.17 -39.40 -0.36 -5.37 16 18 C 0.15 3.69 6.65 -39.11 -0.26 3.43 16 19 O -0.18 -5.08 9.76 0.06 0.00 -5.08 16 20 C -0.39 -10.99 9.49 30.89 0.29 -10.69 16 21 H 0.09 2.33 5.21 -52.48 -0.27 2.06 16 22 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 24 Si 0.94 20.51 29.55 -169.99 -5.02 15.48 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 28 C -0.19 -3.93 9.99 -39.39 -0.39 -4.33 16 29 C -0.07 -1.22 9.05 -39.61 -0.36 -1.58 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.34 4.24 3.74 -39.29 -0.15 4.09 16 34 H 0.04 0.62 7.84 -51.93 -0.41 0.22 16 35 H 0.07 0.71 7.60 -51.93 -0.39 0.32 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 0.49 4.81 -51.93 -0.25 0.24 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.64 6.21 -51.93 -0.32 0.32 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.10 1.64 8.03 -52.48 -0.42 1.22 16 48 H 0.13 2.72 5.64 -52.48 -0.30 2.43 16 49 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 50 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 51 H 0.11 1.58 6.51 -52.49 -0.34 1.24 16 LS Contribution 384.17 15.07 5.79 5.79 Total: -1.00 -28.90 384.17 -9.68 -38.58 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -8.45 Total: 8.19 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: -2.23 Total: -29.75 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.22 Total: -33.22 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: 0.00 Total: -5.08 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.90 -9.68 -38.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181588310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.655 kcal (2) G-P(sol) polarization free energy of solvation -28.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds