Wall clock time and date at job start Tue Mar 31 2020 12:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46898 * 2 1 4 4 N 1.46893 * 109.47189 * 239.99745 * 2 1 3 5 5 C 1.46892 * 111.00358 * 85.00268 * 4 2 1 6 6 C 1.53001 * 109.47532 * 179.97438 * 5 4 2 7 7 H 1.09007 * 110.01531 * 53.60694 * 6 5 4 8 8 C 1.54265 * 110.03274 * 292.16867 * 6 5 4 9 9 C 1.54891 * 104.19590 * 217.10139 * 8 6 5 10 10 C 1.54889 * 102.74597 * 37.93981 * 9 8 6 11 11 C 1.53871 * 110.03547 * 174.99707 * 6 5 4 12 12 C 1.53006 * 110.03263 * 238.57161 * 11 6 5 13 13 C 1.53003 * 110.03002 * 359.97438 * 11 6 5 14 14 C 1.50699 * 109.46921 * 119.99230 * 2 1 3 15 15 C 1.38309 * 119.92557 * 79.73046 * 14 2 1 16 16 C 1.38108 * 120.06367 * 179.72677 * 15 14 2 17 17 C 1.38872 * 119.93090 * 0.54294 * 16 15 14 18 18 O 1.35753 * 120.06837 * 179.75369 * 17 16 15 19 19 C 1.34825 * 117.00044 * 174.44648 * 18 17 16 20 20 H 1.07998 * 120.00475 * 5.05292 * 19 18 17 21 21 C 1.38664 * 120.00037 * 185.05511 * 19 18 17 22 22 N 1.31561 * 119.99494 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46912 * 90.00223 * 23 21 19 25 25 H 1.48497 * 109.47338 * 209.99805 * 23 21 19 26 26 H 1.48502 * 109.47439 * 329.99974 * 23 21 19 27 27 C 1.38886 * 119.86496 * 359.72815 * 17 16 15 28 28 C 1.38092 * 119.92808 * 359.97438 * 27 17 16 29 29 H 1.08991 * 109.47461 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47117 * 300.00985 * 1 2 3 31 31 H 1.08998 * 109.46856 * 60.00191 * 1 2 3 32 32 H 1.00906 * 111.00005 * 321.04338 * 4 2 1 33 33 H 1.09001 * 109.46991 * 299.99762 * 5 4 2 34 34 H 1.09003 * 109.47491 * 59.99848 * 5 4 2 35 35 H 1.09004 * 110.48484 * 335.77769 * 8 6 5 36 36 H 1.08996 * 110.48656 * 98.42615 * 8 6 5 37 37 H 1.08997 * 110.75551 * 279.62632 * 9 8 6 38 38 H 1.08998 * 110.91601 * 156.32408 * 9 8 6 39 39 H 1.08999 * 110.48930 * 203.37713 * 10 9 8 40 40 H 1.09003 * 110.48928 * 80.73861 * 10 9 8 41 41 H 1.08995 * 109.46875 * 59.99969 * 12 11 6 42 42 H 1.09004 * 109.46734 * 180.02562 * 12 11 6 43 43 H 1.09001 * 109.46891 * 300.00052 * 12 11 6 44 44 H 1.08998 * 109.47103 * 60.00395 * 13 11 6 45 45 H 1.08999 * 109.46928 * 179.97438 * 13 11 6 46 46 H 1.08999 * 109.47636 * 299.99635 * 13 11 6 47 47 H 1.07995 * 119.96961 * 359.97438 * 15 14 2 48 48 H 1.08004 * 120.02940 * 180.27020 * 16 15 14 49 49 H 0.97001 * 119.99292 * 180.02562 * 22 21 19 50 50 H 1.08001 * 120.03371 * 180.02562 * 27 17 16 51 51 H 1.07999 * 119.96387 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0826 0.2224 -2.3468 6 6 2.5964 -0.5331 -3.5741 7 1 1.9920 -1.4243 -3.7436 8 6 4.0743 -0.9262 -3.3721 9 6 4.7074 -0.7579 -4.7756 10 6 4.0004 0.5083 -5.3198 11 6 2.5494 0.3790 -4.8124 12 6 1.6700 -0.2511 -5.8944 13 6 2.0029 1.7557 -4.4289 14 6 2.0323 -0.7102 1.2306 15 6 2.0608 -2.0926 1.2661 16 6 2.5258 -2.7464 2.3902 17 6 2.9545 -2.0145 3.4898 18 8 3.4074 -2.6543 4.5981 19 6 3.9151 -1.8868 5.5835 20 1 3.8735 -0.8104 5.5055 21 6 4.4907 -2.4794 6.6972 22 7 4.5409 -3.7906 6.7924 23 14 5.1947 -1.4160 8.0620 24 1 4.1372 -1.1353 9.0661 25 1 6.3205 -2.1306 8.7155 26 1 5.6859 -0.1369 7.4896 27 6 2.9194 -0.6266 3.4531 28 6 2.4591 0.0214 2.3239 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.4496 -1.4980 -1.4099 33 1 1.0872 0.6161 -2.5525 34 1 2.7590 1.0461 -2.1182 35 1 4.5522 -0.2583 -2.6554 36 1 4.1517 -1.9616 -3.0404 37 1 4.4898 -1.6218 -5.4037 38 1 5.7829 -0.5977 -4.7007 39 1 4.0240 0.5199 -6.4094 40 1 4.4664 1.4079 -4.9177 41 1 0.6592 -0.3844 -5.5090 42 1 1.6436 0.4018 -6.7669 43 1 2.0813 -1.2198 -6.1783 44 1 2.6497 2.2065 -3.6762 45 1 1.9740 2.3940 -5.3119 46 1 0.9962 1.6476 -4.0252 47 1 1.7228 -2.6612 0.4124 48 1 2.5519 -3.8258 2.4157 49 1 4.9433 -4.2051 7.5716 50 1 3.2525 -0.0547 4.3066 51 1 2.4319 1.1006 2.2946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388849607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:35 Heat of formation + Delta-G solvation = -27.218860 kcal Electronic energy + Delta-G solvation = -26503.682200 eV Core-core repulsion = 22981.415277 eV Total energy + Delta-G solvation = -3522.266924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.88720 -39.04371 -37.36290 -35.40941 -32.39023 -32.32513 -31.57870 -30.11611 -28.45703 -27.76504 -27.70853 -25.35671 -24.93493 -23.34591 -22.46139 -21.66161 -20.65757 -20.03021 -18.39139 -17.86586 -16.89291 -16.02115 -15.61840 -15.14978 -15.05793 -14.60305 -14.44057 -14.03183 -13.98816 -13.63009 -13.50951 -13.42082 -13.35877 -13.14682 -12.85547 -12.66138 -12.45712 -12.23707 -12.08921 -11.84747 -11.72220 -11.62785 -11.39424 -11.14216 -11.11142 -10.92201 -10.72427 -10.68741 -10.68319 -10.57945 -10.52639 -10.45685 -10.37057 -10.21582 -9.26281 -8.77411 -8.22885 -8.07354 -7.07360 -6.39872 -3.98429 2.31041 2.41319 3.15334 3.16473 3.21199 4.00893 4.11936 4.35082 4.44373 4.55200 4.69558 5.01018 5.07530 5.12981 5.14613 5.15540 5.18180 5.27681 5.29337 5.34912 5.39959 5.42132 5.45854 5.52353 5.56241 5.63906 5.68796 5.72802 5.77902 5.78679 5.82013 5.84535 5.88592 5.96143 6.01616 6.04307 6.11678 6.19347 6.20365 6.28672 6.30373 6.39072 6.50816 6.79208 6.94454 7.11274 7.14785 7.37876 7.49772 7.50635 7.53512 7.91533 8.05650 9.06106 9.78024 10.78505 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.002334 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.444494 B =11991.475624 C =12337.190514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.142 3.858 3 H 0.073 0.927 4 N -0.679 5.679 5 C 0.065 3.935 6 C -0.080 4.080 7 H 0.069 0.931 8 C -0.105 4.105 9 C -0.129 4.129 10 C -0.114 4.114 11 C -0.065 4.065 12 C -0.137 4.137 13 C -0.143 4.143 14 C -0.164 4.164 15 C -0.053 4.053 16 C -0.194 4.194 17 C 0.153 3.847 18 O -0.181 6.181 19 C -0.390 4.390 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.233 4.233 28 C -0.069 4.069 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.336 0.664 33 H 0.029 0.971 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.108 0.892 48 H 0.114 0.886 49 H 0.269 0.731 50 H 0.125 0.875 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 9.265 -22.787 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.032 3.968 3 H 0.091 0.909 4 N -0.309 5.309 5 C -0.064 4.064 6 C -0.099 4.099 7 H 0.088 0.912 8 C -0.143 4.143 9 C -0.166 4.166 10 C -0.152 4.152 11 C -0.066 4.066 12 C -0.194 4.194 13 C -0.200 4.200 14 C -0.166 4.166 15 C -0.071 4.071 16 C -0.214 4.214 17 C 0.099 3.901 18 O -0.085 6.085 19 C -0.466 4.466 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.200 1.200 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.252 4.252 28 C -0.088 4.088 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.155 0.845 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.126 0.874 48 H 0.132 0.868 49 H 0.079 0.921 50 H 0.142 0.858 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.521 8.939 -22.389 24.528 hybrid contribution -0.610 0.673 0.535 1.054 sum -5.131 9.611 -21.854 24.420 Atomic orbital electron populations 1.22491 0.97460 1.02060 1.01405 1.20161 0.91631 0.96639 0.88329 0.90875 1.60582 1.57630 1.09412 1.03257 1.22258 0.98911 0.95420 0.89842 1.21828 0.97475 0.97555 0.93006 0.91247 1.22271 0.94066 1.01946 0.95997 1.22526 0.99394 0.97533 0.97184 1.22473 0.94454 0.98368 0.99877 1.21177 0.95322 0.95208 0.94870 1.21897 0.99177 1.00458 0.97887 1.22023 1.01040 0.95916 1.01055 1.19082 1.08914 0.93529 0.95045 1.20303 0.97597 0.93408 0.95818 1.20207 1.08862 0.99280 0.93012 1.19384 0.92170 0.90915 0.87606 1.83977 1.67592 1.35008 1.21883 1.21305 1.37865 0.90662 0.96816 0.89180 1.25275 0.96848 0.96299 0.98179 1.70045 1.41983 1.08697 1.29280 0.85729 0.78658 0.79109 0.80022 1.19954 1.20297 1.19247 1.21099 1.09705 0.94411 1.00018 1.20534 0.97391 0.98027 0.92837 0.92431 0.91982 0.93511 0.84545 0.95308 0.91043 0.91198 0.91542 0.91948 0.91854 0.92047 0.91651 0.92863 0.92923 0.92634 0.92237 0.93161 0.92465 0.87417 0.86791 0.92123 0.85756 0.87914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 9.14 37.16 0.34 -1.68 16 2 C 0.14 1.86 2.79 -68.87 -0.19 1.66 16 3 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 4 N -0.68 -7.99 5.53 -107.96 -0.60 -8.58 16 5 C 0.06 0.63 3.59 -3.83 -0.01 0.62 16 6 C -0.08 -0.71 2.74 -89.50 -0.25 -0.96 16 7 H 0.07 0.63 7.67 -51.93 -0.40 0.24 16 8 C -0.11 -1.04 6.19 -25.07 -0.16 -1.20 16 9 C -0.13 -1.09 6.91 -24.74 -0.17 -1.26 16 10 C -0.11 -0.89 5.90 -25.07 -0.15 -1.03 16 11 C -0.07 -0.50 0.94 -153.39 -0.14 -0.65 16 12 C -0.14 -0.97 8.14 37.16 0.30 -0.66 16 13 C -0.14 -1.07 7.20 37.16 0.27 -0.80 16 14 C -0.16 -2.79 4.96 -104.57 -0.52 -3.30 16 15 C -0.05 -0.95 9.31 -39.60 -0.37 -1.32 16 16 C -0.19 -4.19 9.99 -39.39 -0.39 -4.58 16 17 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 18 O -0.18 -5.26 9.76 0.05 0.00 -5.26 16 19 C -0.39 -11.09 9.49 30.89 0.29 -10.79 16 20 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 22 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 23 Si 0.94 20.83 29.55 -169.99 -5.02 15.81 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 27 C -0.23 -5.15 9.17 -39.40 -0.36 -5.52 16 28 C -0.07 -1.28 9.66 -39.61 -0.38 -1.67 16 29 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.46 7.45 -51.93 -0.39 0.08 16 32 H 0.34 3.73 7.82 -39.29 -0.31 3.42 16 33 H 0.03 0.27 5.72 -51.93 -0.30 -0.03 16 34 H 0.07 0.76 6.82 -51.93 -0.35 0.40 16 35 H 0.07 0.79 7.76 -51.93 -0.40 0.39 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.44 7.84 -51.93 -0.41 0.03 16 40 H 0.06 0.52 7.84 -51.93 -0.41 0.11 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.47 6.86 -51.93 -0.36 0.11 16 45 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.43 6.62 -51.93 -0.34 0.08 16 47 H 0.11 1.65 7.25 -52.49 -0.38 1.27 16 48 H 0.11 2.39 8.06 -52.48 -0.42 1.97 16 49 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.12 2.76 5.64 -52.49 -0.30 2.47 16 51 H 0.10 1.64 8.03 -52.49 -0.42 1.21 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -30.02 393.89 -9.96 -39.99 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -8.79 Total: 5.76 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: -2.25 Total: -28.67 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.16 Total: -33.57 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: 0.00 Total: -5.26 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.02 -9.96 -39.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388849607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.769 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds