Wall clock time and date at job start Tue Mar 31 2020 11:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47386 * 2 1 4 4 C 1.52997 * 109.46992 * 239.99833 * 2 1 3 5 5 C 1.50702 * 109.46954 * 64.99980 * 4 2 1 6 6 H 1.08003 * 120.00240 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00109 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99826 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00208 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47422 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47251 * 120.00051 * 9 7 5 12 12 H 1.48502 * 109.47115 * 239.99597 * 9 7 5 13 13 C 1.52996 * 109.47145 * 120.00147 * 2 1 3 14 14 N 1.46904 * 109.47250 * 294.99859 * 13 2 1 15 15 C 1.46901 * 111.00457 * 170.00154 * 14 13 2 16 16 C 1.52994 * 109.47259 * 196.51942 * 15 14 13 17 17 C 1.50696 * 109.47254 * 181.79653 * 16 15 14 18 18 C 1.38241 * 119.99920 * 89.99754 * 17 16 15 19 19 C 1.38232 * 119.99872 * 180.02562 * 18 17 16 20 20 C 1.38236 * 120.00158 * 359.95694 * 19 18 17 21 21 C 1.38229 * 120.00099 * 359.97438 * 20 19 18 22 22 C 1.38238 * 120.00154 * 269.97605 * 17 16 15 23 23 C 1.46899 * 110.99783 * 293.95629 * 14 13 2 24 24 H 1.08996 * 110.46288 * 39.03888 * 23 14 13 25 25 C 1.54515 * 110.51347 * 161.64737 * 23 14 13 26 26 C 1.54471 * 104.06592 * 118.64116 * 25 23 14 27 27 O 1.44429 * 104.80178 * 23.98065 * 26 25 23 28 28 C 1.44428 * 105.27552 * 319.48638 * 27 26 25 29 29 H 1.09001 * 109.47017 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46694 * 300.00347 * 1 2 3 31 31 H 1.08997 * 109.47350 * 59.99646 * 1 2 3 32 32 H 1.08994 * 109.47242 * 185.00235 * 4 2 1 33 33 H 1.09000 * 109.47466 * 305.00339 * 4 2 1 34 34 H 0.96999 * 120.00313 * 180.02562 * 8 7 5 35 35 H 1.08992 * 109.47495 * 174.99986 * 13 2 1 36 36 H 1.09005 * 109.47416 * 54.99419 * 13 2 1 37 37 H 1.08997 * 109.47127 * 76.51120 * 15 14 13 38 38 H 1.09000 * 109.46625 * 316.51833 * 15 14 13 39 39 H 1.08997 * 109.47260 * 61.79470 * 16 15 14 40 40 H 1.09003 * 109.47235 * 301.79678 * 16 15 14 41 41 H 1.07996 * 120.00114 * 359.97438 * 18 17 16 42 42 H 1.08003 * 119.99904 * 179.97438 * 19 18 17 43 43 H 1.08004 * 120.00142 * 179.72185 * 20 19 18 44 44 H 1.07996 * 120.00242 * 179.97438 * 21 20 19 45 45 H 1.07997 * 119.99453 * 0.02562 * 22 17 16 46 46 H 1.08999 * 110.50770 * 237.28812 * 25 23 14 47 47 H 1.09003 * 110.50410 * 359.97438 * 25 23 14 48 48 H 1.08998 * 110.37376 * 142.80905 * 26 25 23 49 49 H 1.09002 * 110.37701 * 265.04082 * 26 25 23 50 50 H 1.08994 * 110.36838 * 281.68202 * 28 27 26 51 51 H 1.09000 * 110.36860 * 159.34333 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0806 0.9746 -2.3757 7 6 1.9922 -0.4023 -3.7283 8 7 2.6754 -1.5193 -3.8512 9 14 1.4987 0.5628 -5.2496 10 1 0.7422 1.7744 -4.8434 11 1 2.7169 0.9666 -5.9966 12 1 0.6440 -0.2857 -6.1184 13 6 2.0401 -0.7213 1.2492 14 7 1.6515 0.0374 2.4456 15 6 1.9125 -0.7357 3.6672 16 6 1.1400 -0.1199 4.8354 17 6 1.4424 -0.8863 6.0972 18 6 2.5021 -0.5063 6.8995 19 6 2.7798 -1.2096 8.0566 20 6 1.9973 -2.2923 8.4121 21 6 0.9367 -2.6713 7.6107 22 6 0.6598 -1.9689 6.4527 23 6 2.3342 1.3374 2.4894 24 1 2.3915 1.7714 1.4913 25 6 1.6074 2.2984 3.4567 26 6 2.6654 2.6152 4.5367 27 8 3.9351 2.3816 3.8891 28 6 3.7455 1.1873 3.0994 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 3.1263 -0.7995 -1.2056 33 1 1.6054 -1.7198 -1.2952 34 1 2.9227 -1.8423 -4.7318 35 1 3.1263 -0.7995 1.2056 36 1 1.6054 -1.7198 1.2952 37 1 2.9799 -0.7176 3.8875 38 1 1.5893 -1.7663 3.5208 39 1 0.0708 -0.1671 4.6290 40 1 1.4401 0.9204 4.9614 41 1 3.1136 0.3394 6.6217 42 1 3.6080 -0.9131 8.6832 43 1 2.2170 -2.8445 9.3139 44 1 0.3256 -3.5174 7.8882 45 1 -0.1681 -2.2657 5.8259 46 1 1.3075 3.2085 2.9372 47 1 0.7412 1.8089 3.9021 48 1 2.5860 3.6555 4.8520 49 1 2.5458 1.9500 5.3919 50 1 3.7926 0.3019 3.7334 51 1 4.4957 1.1308 2.3108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602484607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:42 Heat of formation + Delta-G solvation = -5.583231 kcal Electronic energy + Delta-G solvation = -27409.418662 eV Core-core repulsion = 23888.089929 eV Total energy + Delta-G solvation = -3521.328733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.60965 -39.21471 -37.08316 -34.90956 -33.12475 -31.97568 -31.13936 -30.97531 -28.95460 -28.11043 -26.69925 -25.10178 -23.95144 -22.93299 -22.73308 -22.06755 -21.06544 -20.16567 -18.67783 -17.14430 -16.88510 -16.43686 -16.22462 -15.52852 -15.36748 -15.19167 -14.70859 -14.37612 -14.33485 -14.14482 -13.64831 -13.49622 -13.29325 -13.00113 -12.80003 -12.63705 -12.37785 -12.22233 -11.86940 -11.50223 -11.49454 -11.39749 -11.28852 -11.19924 -11.00195 -10.85654 -10.78783 -10.59422 -10.44159 -10.28246 -10.22582 -9.80398 -9.52351 -9.16262 -9.11237 -8.98661 -8.81703 -8.33421 -8.01546 -5.98204 -3.99185 1.16683 1.20971 3.31737 3.39530 3.43371 3.56810 3.77208 4.19735 4.48154 4.60160 4.64219 4.73604 4.78104 4.81231 4.91373 4.91692 5.03668 5.07125 5.15449 5.22711 5.35028 5.37505 5.38083 5.56092 5.57900 5.60962 5.72798 5.74631 5.77778 5.84352 5.87097 5.90062 6.03259 6.11918 6.12932 6.18831 6.28306 6.32390 6.37136 6.48853 6.52094 6.64636 6.71761 6.82887 6.98250 7.12384 7.19562 7.31550 7.37980 7.68782 7.83996 8.01961 8.45884 9.07398 9.64393 11.13357 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018795 B = 0.002854 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.409705 B = 9809.725068 C =10590.441130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.059 3.941 14 N -0.520 5.520 15 C 0.044 3.956 16 C -0.105 4.105 17 C -0.076 4.076 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.129 4.129 21 C -0.119 4.119 22 C -0.116 4.116 23 C 0.050 3.950 24 H 0.105 0.895 25 C -0.159 4.159 26 C 0.034 3.966 27 O -0.373 6.373 28 C -0.003 4.003 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.012 0.988 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.077 0.923 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.062 0.938 50 H 0.077 0.923 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.024 2.027 24.372 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.068 4.068 14 N -0.244 5.244 15 C -0.083 4.083 16 C -0.142 4.142 17 C -0.076 4.076 18 C -0.138 4.138 19 C -0.137 4.137 20 C -0.147 4.147 21 C -0.137 4.137 22 C -0.134 4.134 23 C -0.059 4.059 24 H 0.123 0.877 25 C -0.197 4.197 26 C -0.042 4.042 27 O -0.291 6.291 28 C -0.080 4.080 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.095 0.905 47 H 0.117 0.883 48 H 0.107 0.893 49 H 0.079 0.921 50 H 0.095 0.905 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.263 2.125 24.215 24.413 hybrid contribution 0.526 0.010 -0.935 1.073 sum -1.737 2.134 23.280 23.442 Atomic orbital electron populations 1.21574 0.95693 1.00494 1.00168 1.21245 0.96031 0.98948 0.93690 0.92583 1.19127 0.95885 0.95580 0.90467 1.21260 1.34499 1.08228 0.90941 0.92543 1.25019 0.95350 0.95089 0.99104 1.69974 1.39161 1.21260 1.23264 0.86588 0.78249 0.80149 0.83334 1.19755 1.21117 1.21097 1.22368 0.97784 0.97261 0.89388 1.62237 1.56901 1.03120 1.02106 1.22350 0.98583 0.97675 0.89712 1.21316 1.01841 1.00408 0.90609 1.19999 0.95247 0.96017 0.96362 1.21092 0.97457 1.00263 0.95009 1.21136 0.99566 0.95966 0.97003 1.21125 0.96051 0.97574 0.99945 1.21158 0.97721 0.99751 0.95067 1.21131 0.99901 0.95452 0.96937 1.23153 0.90545 0.91223 1.01006 0.87663 1.23280 0.99502 1.00011 0.96879 1.23635 0.83680 1.01470 0.95427 1.89119 1.31923 1.44558 1.63459 1.24448 0.98977 0.89017 0.95594 0.94230 0.93921 0.92803 0.96975 0.96588 0.93162 0.95163 0.91038 0.93227 0.90740 0.90121 0.88540 0.86298 0.86265 0.86369 0.86228 0.85968 0.90452 0.88320 0.89318 0.92055 0.90504 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.89 37.16 0.33 -1.96 16 2 C -0.08 -1.58 2.29 -90.62 -0.21 -1.79 16 3 H 0.06 1.13 6.10 -51.93 -0.32 0.81 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -14.15 8.41 -34.44 -0.29 -14.44 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.06 0.97 4.29 -3.82 -0.02 0.95 16 14 N -0.52 -7.01 3.88 -224.78 -0.87 -7.89 16 15 C 0.04 0.51 4.61 -3.83 -0.02 0.50 16 16 C -0.10 -1.04 4.23 -27.89 -0.12 -1.16 16 17 C -0.08 -0.75 5.13 -104.62 -0.54 -1.29 16 18 C -0.12 -1.15 9.70 -39.58 -0.38 -1.53 16 19 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 20 C -0.13 -1.10 10.05 -39.59 -0.40 -1.49 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 22 C -0.12 -1.11 9.70 -39.58 -0.38 -1.50 16 23 C 0.05 0.66 2.99 -66.14 -0.20 0.46 16 24 H 0.11 1.60 5.89 -51.93 -0.31 1.29 16 25 C -0.16 -1.73 5.94 -25.16 -0.15 -1.88 16 26 C 0.03 0.35 7.16 37.93 0.27 0.63 16 27 O -0.37 -4.97 11.65 -35.23 -0.41 -5.38 16 28 C 0.00 -0.03 6.75 37.93 0.26 0.22 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 31 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.03 0.51 7.91 -51.93 -0.41 0.10 16 36 H 0.07 1.18 7.86 -51.93 -0.41 0.77 16 37 H 0.05 0.59 4.85 -51.93 -0.25 0.34 16 38 H 0.07 0.89 7.80 -51.93 -0.40 0.49 16 39 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 40 H 0.10 0.92 2.12 -51.93 -0.11 0.81 16 41 H 0.12 1.05 6.94 -52.49 -0.36 0.69 16 42 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.10 1.02 5.37 -51.93 -0.28 0.74 16 48 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.06 0.56 5.14 -51.93 -0.27 0.30 16 50 H 0.08 0.94 4.59 -51.93 -0.24 0.70 16 51 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 383.59 15.07 5.78 5.78 Total: -1.00 -30.13 383.59 -10.92 -41.05 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.27 Total: 1.09 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -2.86 Total: -25.16 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: -0.14 Total: -34.01 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.41 Total: -5.38 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.13 -10.92 -41.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602484607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.462 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds