Wall clock time and date at job start Tue Mar 31 2020 11:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47041 * 2 1 4 4 C 1.52996 * 109.47062 * 239.99750 * 2 1 3 5 5 C 1.50697 * 109.47032 * 65.00244 * 4 2 1 6 6 H 1.07998 * 120.00355 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99819 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00123 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00184 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46853 * 60.00250 * 9 7 5 11 11 H 1.48492 * 109.47507 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47210 * 300.01007 * 9 7 5 13 13 C 1.52999 * 109.46567 * 119.99745 * 2 1 3 14 14 N 1.46897 * 109.47435 * 294.99814 * 13 2 1 15 15 C 1.46840 * 111.00419 * 294.00084 * 14 13 2 16 16 C 1.53040 * 109.52786 * 174.15877 * 15 14 13 17 17 C 1.53114 * 109.27587 * 59.17626 * 16 15 14 18 18 C 1.53122 * 109.21619 * 302.31586 * 17 16 15 19 19 C 1.46853 * 111.00143 * 169.78654 * 14 13 2 20 20 H 1.09001 * 109.46210 * 65.83562 * 19 14 13 21 21 C 1.52994 * 109.46146 * 305.85948 * 19 14 13 22 22 H 1.09005 * 109.47779 * 58.30820 * 21 19 14 23 23 O 1.42899 * 109.47298 * 298.31134 * 21 19 14 24 24 C 1.50701 * 109.47128 * 178.31012 * 21 19 14 25 25 C 1.38232 * 119.99957 * 84.72866 * 24 21 19 26 26 C 1.38235 * 120.00128 * 179.77182 * 25 24 21 27 27 C 1.38238 * 119.99967 * 0.47460 * 26 25 24 28 28 C 1.38234 * 119.99512 * 359.79702 * 27 26 25 29 29 C 1.38233 * 120.00142 * 265.00069 * 24 21 19 30 30 H 1.09003 * 109.47045 * 60.00201 * 1 2 3 31 31 H 1.09003 * 109.47041 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47581 * 300.00437 * 1 2 3 33 33 H 1.09003 * 109.46566 * 185.00179 * 4 2 1 34 34 H 1.08996 * 109.47444 * 305.00159 * 4 2 1 35 35 H 0.97003 * 120.00155 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.47040 * 175.00117 * 13 2 1 37 37 H 1.09001 * 109.47321 * 55.00452 * 13 2 1 38 38 H 1.09006 * 109.46520 * 54.13701 * 15 14 13 39 39 H 1.09001 * 109.45870 * 294.17641 * 15 14 13 40 40 H 1.09001 * 109.49854 * 299.23887 * 16 15 14 41 41 H 1.09000 * 109.50421 * 179.11534 * 16 15 14 42 42 H 1.09002 * 109.52421 * 62.25091 * 17 16 15 43 43 H 1.09001 * 109.52412 * 182.37726 * 17 16 15 44 44 H 1.09001 * 109.50631 * 177.62352 * 18 17 16 45 45 H 1.08993 * 109.50285 * 297.74752 * 18 17 16 46 46 H 0.96703 * 113.99874 * 300.00227 * 23 21 19 47 47 H 1.08004 * 119.99691 * 359.97438 * 25 24 21 48 48 H 1.08003 * 120.00030 * 180.25037 * 26 25 24 49 49 H 1.07995 * 120.00074 * 179.77246 * 27 26 25 50 50 H 1.08004 * 119.99782 * 179.97438 * 28 27 26 51 51 H 1.07999 * 119.99947 * 359.97438 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6764 -1.5189 -3.8510 9 14 1.4986 0.5624 -5.2497 10 1 2.0898 1.9233 -5.1871 11 1 1.9936 -0.1375 -6.4621 12 1 0.0186 0.6681 -5.3092 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.3329 1.3374 2.4890 16 6 1.7971 2.1570 3.6650 17 6 2.0384 1.3895 4.9677 18 6 1.3586 0.0203 4.8793 19 6 1.9074 -0.7374 3.6665 20 1 2.9811 -0.8834 3.7854 21 6 1.2165 -2.0984 3.5608 22 1 1.5860 -2.6262 2.6816 23 8 -0.1949 -1.9083 3.4439 24 6 1.5135 -2.9097 4.7955 25 6 0.7416 -2.7484 5.9308 26 6 1.0110 -3.4961 7.0619 27 6 2.0586 -4.3980 7.0609 28 6 2.8341 -4.5552 5.9274 29 6 2.5615 -3.8112 4.7947 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.1263 -0.7995 -1.2054 34 1 1.6054 -1.7198 -1.2951 35 1 2.9237 -1.8419 -4.7316 36 1 3.1262 -0.7995 1.2057 37 1 1.6053 -1.7198 1.2952 38 1 2.1498 1.8747 1.5584 39 1 3.4045 1.1815 2.6133 40 1 0.7280 2.3250 3.5343 41 1 2.3144 3.1156 3.7063 42 1 3.1096 1.2552 5.1183 43 1 1.6206 1.9503 5.8038 44 1 1.5629 -0.5469 5.7874 45 1 0.2828 0.1547 4.7677 46 1 -0.5926 -1.4437 4.1930 47 1 -0.0742 -2.0406 5.9330 48 1 0.4053 -3.3729 7.9476 49 1 2.2715 -4.9794 7.9457 50 1 3.6529 -5.2595 5.9267 51 1 3.1671 -3.9344 3.9090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876663607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:31 Heat of formation + Delta-G solvation = -39.484155 kcal Electronic energy + Delta-G solvation = -27771.600172 eV Core-core repulsion = 24248.801385 eV Total energy + Delta-G solvation = -3522.798787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.45919 -38.78379 -36.46634 -35.44054 -32.99454 -32.18881 -31.42474 -31.09693 -30.22307 -26.94307 -26.33214 -25.77537 -23.76771 -22.81100 -22.56228 -21.85546 -20.79271 -19.52332 -18.74209 -17.78867 -16.53858 -16.15813 -15.70746 -15.68358 -15.30725 -14.65193 -14.51142 -14.36574 -14.21978 -14.19678 -13.59599 -13.37872 -13.25566 -13.09196 -12.78472 -12.63005 -12.24035 -12.07755 -11.90901 -11.47120 -11.42523 -11.27833 -11.25472 -11.18761 -10.84834 -10.79506 -10.77117 -10.53100 -10.29157 -10.18703 -10.10115 -9.85000 -9.46022 -9.10091 -9.04903 -8.90041 -8.84244 -8.27536 -7.91778 -5.92845 -3.93483 1.12591 1.19612 3.37572 3.41699 3.44419 3.53604 4.01366 4.47828 4.51555 4.57912 4.65662 4.70227 4.78669 4.81787 4.89846 4.94619 5.13605 5.21863 5.28605 5.33846 5.42631 5.43150 5.57232 5.62190 5.68147 5.73630 5.76593 5.83289 5.85604 5.89375 5.92751 6.05722 6.08678 6.20458 6.24502 6.29216 6.30333 6.35678 6.42763 6.54461 6.65755 6.78189 6.82728 7.12989 7.27102 7.30624 7.44837 7.51593 7.69638 7.75106 7.92656 8.07974 8.52541 9.12715 9.69459 11.18756 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.003190 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.025061 B = 8774.283218 C = 9747.136091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.078 4.078 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.510 4.510 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.056 3.944 14 N -0.517 5.517 15 C 0.052 3.948 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.117 4.117 19 C 0.061 3.939 20 H 0.043 0.957 21 C 0.149 3.851 22 H 0.113 0.887 23 O -0.533 6.533 24 C -0.107 4.107 25 C -0.110 4.110 26 C -0.120 4.120 27 C -0.124 4.124 28 C -0.118 4.118 29 C -0.110 4.110 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.010 0.990 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.024 0.976 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.366 0.634 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 -0.714 24.708 24.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.071 4.071 14 N -0.241 5.241 15 C -0.075 4.075 16 C -0.154 4.154 17 C -0.155 4.155 18 C -0.155 4.155 19 C -0.048 4.048 20 H 0.061 0.939 21 C 0.089 3.911 22 H 0.130 0.870 23 O -0.338 6.338 24 C -0.108 4.108 25 C -0.128 4.128 26 C -0.138 4.138 27 C -0.142 4.142 28 C -0.136 4.136 29 C -0.129 4.129 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.214 0.786 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.479 -1.050 23.976 24.045 hybrid contribution 0.780 0.497 -0.342 0.986 sum -0.699 -0.553 23.634 23.651 Atomic orbital electron populations 1.21530 0.95516 1.00643 0.99867 1.21192 0.96140 0.98791 0.93543 0.92793 1.19116 0.95725 0.95602 0.90541 1.21200 1.34438 1.08246 0.90997 0.92665 1.25013 0.95391 0.95097 0.99035 1.69956 1.39182 1.21242 1.23395 0.86705 0.78927 0.80079 0.82563 1.20367 1.21417 1.20267 1.22421 0.97129 0.97864 0.89698 1.61884 1.58156 1.03141 1.00966 1.22145 0.95131 0.90892 0.99368 1.21588 1.02071 0.97707 0.94004 1.21531 1.00197 0.95927 0.97816 1.21744 1.00848 0.96095 0.96818 1.22184 0.97750 0.93192 0.91674 0.93920 1.20982 0.82407 0.92851 0.94827 0.86983 1.86709 1.19293 1.80151 1.47671 1.20648 0.96249 0.97625 0.96286 1.20902 0.99538 0.99611 0.92726 1.21107 0.97876 0.96632 0.98185 1.21149 0.95979 0.98832 0.98273 1.21148 0.99730 0.99483 0.93245 1.21058 0.97233 0.95886 0.98680 0.93189 0.94120 0.93856 0.97139 0.96624 0.93106 0.95759 0.90723 0.89694 0.95565 0.91079 0.91953 0.92564 0.92115 0.91363 0.91128 0.78649 0.86150 0.86112 0.86242 0.86027 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.08 -1.63 2.26 -90.62 -0.21 -1.83 16 3 H 0.05 1.14 6.23 -51.93 -0.32 0.82 16 4 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 5 C -0.51 -14.51 8.41 -34.44 -0.29 -14.80 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 9 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.06 0.98 4.07 -3.83 -0.02 0.97 16 14 N -0.52 -7.56 3.84 -226.61 -0.87 -8.43 16 15 C 0.05 0.73 5.30 -3.84 -0.02 0.70 16 16 C -0.12 -1.29 6.09 -26.65 -0.16 -1.45 16 17 C -0.12 -1.15 6.00 -26.61 -0.16 -1.31 16 18 C -0.12 -1.18 4.21 -26.58 -0.11 -1.29 16 19 C 0.06 0.75 1.73 -67.65 -0.12 0.64 16 20 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 21 C 0.15 1.86 2.61 -27.89 -0.07 1.79 16 22 H 0.11 1.59 5.92 -51.93 -0.31 1.28 16 23 O -0.53 -7.10 12.97 -35.23 -0.46 -7.56 16 24 C -0.11 -1.17 4.65 -104.63 -0.49 -1.66 16 25 C -0.11 -1.03 7.28 -39.58 -0.29 -1.32 16 26 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 27 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 28 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 29 C -0.11 -1.18 9.68 -39.58 -0.38 -1.56 16 30 H 0.05 1.08 6.95 -51.93 -0.36 0.71 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 33 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 37 H 0.07 1.35 5.61 -51.93 -0.29 1.06 16 38 H 0.08 1.30 6.13 -51.93 -0.32 0.98 16 39 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.63 5.98 -51.93 -0.31 0.32 16 45 H 0.07 0.69 6.72 -51.93 -0.35 0.34 16 46 H 0.37 3.70 5.62 45.56 0.26 3.96 16 47 H 0.12 0.93 6.21 -52.48 -0.33 0.61 16 48 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 49 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 50 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 51 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 384.30 15.07 5.79 5.79 Total: -1.00 -31.30 384.30 -11.37 -42.68 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -8.16 Total: 2.62 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -3.40 Total: -25.49 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.13 Total: -35.04 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.46 Total: -7.56 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.30 -11.37 -42.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876663607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.194 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds