Wall clock time and date at job start Tue Mar 31 2020 12:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46680 * 2 1 4 4 C 1.52996 * 109.47104 * 240.00235 * 2 1 3 5 5 C 1.53004 * 109.46965 * 175.81267 * 4 2 1 6 6 C 1.50696 * 109.47003 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00310 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00084 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99652 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00207 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47047 * 59.99737 * 10 8 6 12 12 H 1.48494 * 109.47144 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46699 * 299.99626 * 10 8 6 14 14 N 1.46895 * 109.47123 * 119.99775 * 2 1 3 15 15 C 1.46846 * 111.00302 * 289.34736 * 14 2 1 16 16 C 1.53035 * 109.52855 * 185.84178 * 15 14 2 17 17 C 1.53123 * 109.27444 * 300.81861 * 16 15 14 18 18 N 1.46892 * 109.52756 * 297.68325 * 17 16 15 19 19 C 1.52999 * 109.52175 * 177.55424 * 17 16 15 20 20 C 1.50699 * 109.47265 * 180.12771 * 19 17 16 21 21 C 1.38225 * 119.62081 * 125.00503 * 20 19 17 22 22 C 1.38624 * 119.16308 * 179.97438 * 21 20 19 23 23 C 1.38671 * 118.42068 * 359.97438 * 22 21 20 24 24 C 1.38181 * 119.16325 * 0.27216 * 23 22 21 25 25 N 1.31856 * 119.61641 * 304.98073 * 20 19 17 26 26 C 1.53123 * 109.21248 * 57.62349 * 17 16 15 27 27 C 1.46847 * 111.00080 * 53.55829 * 14 2 1 28 28 H 1.08998 * 109.46680 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47160 * 299.99921 * 1 2 3 30 30 H 1.08994 * 109.47224 * 60.00155 * 1 2 3 31 31 H 1.09001 * 109.46941 * 295.80720 * 4 2 1 32 32 H 1.08992 * 109.47435 * 55.81089 * 4 2 1 33 33 H 1.09001 * 109.46844 * 299.99512 * 5 4 2 34 34 H 1.09004 * 109.46795 * 59.99800 * 5 4 2 35 35 H 0.97005 * 119.99636 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46387 * 65.82469 * 15 14 2 37 37 H 1.09005 * 109.45392 * 305.85052 * 15 14 2 38 38 H 1.08999 * 109.50866 * 180.88320 * 16 15 14 39 39 H 1.09000 * 109.50620 * 60.75851 * 16 15 14 40 40 H 1.00901 * 111.00270 * 179.87103 * 18 17 16 41 41 H 1.00900 * 111.00390 * 303.83492 * 18 17 16 42 42 H 1.09008 * 109.47106 * 60.13199 * 19 17 16 43 43 H 1.08997 * 109.47327 * 300.13104 * 19 17 16 44 44 H 1.08001 * 120.41818 * 359.97438 * 21 20 19 45 45 H 1.08001 * 120.79020 * 180.02562 * 22 21 20 46 46 H 1.08005 * 120.41918 * 180.02562 * 23 22 21 47 47 H 1.08003 * 119.61638 * 179.70268 * 24 23 22 48 48 H 1.09004 * 109.50296 * 62.31579 * 26 17 16 49 49 H 1.08996 * 109.50430 * 182.43320 * 26 17 16 50 50 H 1.08998 * 109.45984 * 294.17341 * 27 14 2 51 51 H 1.08993 * 109.46156 * 54.15480 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5665 -0.6306 -1.3030 6 6 4.0688 -1.3415 -2.5331 7 1 3.3694 -1.8106 -3.2092 8 6 5.4214 -1.3921 -2.7960 9 7 6.2730 -0.8204 -1.9730 10 14 6.0441 -2.2727 -4.3213 11 1 5.4670 -1.6345 -5.5316 12 1 7.5255 -2.1848 -4.3734 13 1 5.6348 -3.6993 -4.2709 14 7 2.0197 -0.6924 1.1994 15 6 1.7670 0.1040 2.4070 16 6 2.4166 -0.5766 3.6139 17 6 1.8329 -1.9829 3.7760 18 7 0.3912 -1.8885 4.0410 19 6 2.5222 -2.6910 4.9441 20 6 1.9491 -4.0760 5.1006 21 6 2.7936 -5.1702 5.0885 22 6 2.2563 -6.4398 5.2338 23 6 0.8836 -6.5620 5.3871 24 6 0.1017 -5.4226 5.3842 25 7 0.6479 -4.2299 5.2481 26 6 2.0655 -2.7766 2.4874 27 6 1.4274 -2.0313 1.3128 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 1.7394 -1.7682 -1.2125 32 1 1.6168 -0.2526 -2.1376 33 1 3.8672 0.4165 -1.3397 34 1 3.9897 -1.0993 -0.4145 35 1 7.2246 -0.8557 -2.1582 36 1 0.6923 0.1847 2.5705 37 1 2.1909 1.1002 2.2801 38 1 2.2155 0.0066 4.5126 39 1 3.4931 -0.6452 3.4572 40 1 -0.0173 -2.8048 4.1496 41 1 0.2089 -1.3131 4.8495 42 1 2.3579 -2.1242 5.8606 43 1 3.5918 -2.7606 4.7466 44 1 3.8586 -5.0377 4.9673 45 1 2.8919 -7.3130 5.2285 46 1 0.4308 -7.5356 5.5032 47 1 -0.9688 -5.5096 5.4983 48 1 3.1364 -2.8808 2.3125 49 1 1.6139 -3.7641 2.5817 50 1 0.3544 -1.9406 1.4815 51 1 1.6047 -2.5861 0.3915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:22 Heat of formation + Delta-G solvation = 28.617740 kcal Electronic energy + Delta-G solvation = -27680.240912 eV Core-core repulsion = 24192.687996 eV Total energy + Delta-G solvation = -3487.552916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.76525 -39.24768 -36.61708 -33.51142 -32.70709 -32.34592 -31.26296 -30.50727 -29.44066 -28.52797 -27.02456 -25.03041 -23.74344 -23.16438 -23.07317 -21.64904 -20.78460 -19.29993 -18.27732 -17.12005 -16.45148 -16.07626 -15.88414 -15.74032 -15.45720 -14.64554 -14.48357 -14.29903 -14.16054 -13.93707 -13.71493 -13.25254 -13.14979 -12.98683 -12.70370 -12.33890 -12.17486 -12.10425 -11.82492 -11.78629 -11.53561 -11.29813 -11.19391 -11.02808 -10.78944 -10.72216 -10.40993 -10.17559 -10.14639 -10.10184 -9.81897 -9.69396 -9.44770 -9.20430 -9.08564 -8.81255 -8.34618 -8.16795 -7.43584 -5.83146 -3.83961 0.86486 1.00531 3.41213 3.45159 3.47975 3.51817 3.99964 4.37943 4.50025 4.58127 4.58895 4.76264 4.84722 4.90277 4.97960 5.02577 5.19295 5.34552 5.44735 5.50259 5.51905 5.55548 5.65239 5.70278 5.72671 5.86502 5.88648 5.90166 5.93356 5.94837 6.00072 6.11456 6.18107 6.25841 6.32341 6.42868 6.44783 6.47590 6.53178 6.57511 6.72249 6.83527 7.03392 7.41246 7.48517 7.69301 7.81628 7.84365 7.88392 7.91791 8.16271 8.31054 8.64200 9.25253 9.78067 11.27746 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.003416 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.828803 B = 8194.079861 C = 9371.620937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.083 3.917 3 H 0.073 0.927 4 C -0.101 4.101 5 C 0.032 3.968 6 C -0.518 4.518 7 H 0.049 0.951 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.279 1.279 14 N -0.516 5.516 15 C 0.064 3.936 16 C -0.101 4.101 17 C 0.132 3.868 18 N -0.834 5.834 19 C -0.105 4.105 20 C 0.142 3.858 21 C -0.169 4.169 22 C -0.070 4.070 23 C -0.183 4.183 24 C 0.103 3.897 25 N -0.487 5.487 26 C -0.098 4.098 27 C 0.064 3.936 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.008 0.992 34 H 0.032 0.968 35 H 0.258 0.742 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.354 0.646 41 H 0.330 0.670 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.155 0.845 48 H 0.072 0.928 49 H 0.050 0.950 50 H 0.042 0.958 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.599 -7.303 18.985 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.091 0.909 4 C -0.139 4.139 5 C -0.005 4.005 6 C -0.556 4.556 7 H 0.067 0.933 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.205 1.205 14 N -0.240 5.240 15 C -0.064 4.064 16 C -0.140 4.140 17 C 0.038 3.962 18 N -0.369 5.369 19 C -0.145 4.145 20 C 0.005 3.995 21 C -0.189 4.189 22 C -0.096 4.096 23 C -0.203 4.203 24 C -0.054 4.054 25 N -0.198 5.198 26 C -0.136 4.136 27 C -0.063 4.063 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.026 0.974 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.176 0.824 41 H 0.141 0.859 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.172 0.828 48 H 0.091 0.909 49 H 0.069 0.931 50 H 0.060 0.940 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.494 -6.278 18.244 22.458 hybrid contribution 0.400 -1.798 0.172 1.851 sum -11.094 -8.076 18.416 22.966 Atomic orbital electron populations 1.22466 0.98926 1.01610 1.00976 1.21803 0.91067 0.98268 0.91353 0.90891 1.21703 1.00672 0.98248 0.93304 1.18972 0.88172 0.96562 0.96834 1.21336 0.91679 1.34294 1.08328 0.93272 1.24983 0.97141 0.95839 0.96386 1.69976 1.02017 1.44712 1.36706 0.86776 0.77552 0.80288 0.84028 1.20437 1.21432 1.20456 1.62050 1.58342 1.02168 1.01460 1.21893 0.98614 0.96106 0.89805 1.21606 1.00717 0.94050 0.97600 1.20709 0.88136 0.94804 0.92583 1.59204 1.10956 1.21313 1.45475 1.21545 1.00980 0.91011 1.00925 1.21274 0.89092 0.96025 0.93117 1.22038 1.01571 0.93042 1.02216 1.21616 0.95364 0.97705 0.94911 1.22094 0.94735 1.00367 1.03108 1.22750 1.00399 0.87608 0.94653 1.67179 1.12883 1.26467 1.13240 1.21567 1.01562 0.96946 0.93511 1.21922 0.96566 0.90256 0.97597 0.92692 0.93374 0.92850 0.93522 0.93615 0.97382 0.94976 0.93274 0.94006 0.91916 0.92349 0.90767 0.82406 0.85894 0.90189 0.89674 0.84679 0.84871 0.84947 0.82764 0.90898 0.93090 0.93992 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 8.44 37.16 0.31 -2.48 16 2 C 0.08 1.52 2.31 -67.71 -0.16 1.36 16 3 H 0.07 1.37 7.97 -51.93 -0.41 0.95 16 4 C -0.10 -2.19 4.55 -26.73 -0.12 -2.32 16 5 C 0.03 0.85 4.85 -27.88 -0.14 0.71 16 6 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -27.63 13.29 55.43 0.74 -26.89 16 10 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 N -0.52 -9.00 4.02 -226.69 -0.91 -9.91 16 15 C 0.06 0.95 5.00 -3.84 -0.02 0.93 16 16 C -0.10 -1.30 5.02 -26.65 -0.13 -1.44 16 17 C 0.13 1.60 0.58 -131.48 -0.08 1.52 16 18 N -0.83 -9.83 7.41 0.84 0.01 -9.83 16 19 C -0.10 -1.10 4.90 -27.88 -0.14 -1.23 16 20 C 0.14 1.51 4.96 -82.59 -0.41 1.10 16 21 C -0.17 -1.63 9.71 -39.44 -0.38 -2.01 16 22 C -0.07 -0.58 10.18 -39.28 -0.40 -0.98 16 23 C -0.18 -1.42 10.11 -39.44 -0.40 -1.82 16 24 C 0.10 0.89 11.18 -17.55 -0.20 0.70 16 25 N -0.49 -5.12 7.14 -9.47 -0.07 -5.18 16 26 C -0.10 -1.43 4.76 -26.64 -0.13 -1.56 16 27 C 0.06 1.07 4.38 -3.83 -0.02 1.05 16 28 H 0.05 0.85 6.46 -51.93 -0.34 0.52 16 29 H 0.05 0.70 6.84 -51.93 -0.36 0.34 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 1.01 6.28 -51.93 -0.33 0.68 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.03 0.92 7.73 -51.93 -0.40 0.52 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.04 0.62 6.44 -51.93 -0.33 0.28 16 37 H 0.06 0.94 8.01 -51.93 -0.42 0.52 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.35 4.28 5.79 -39.29 -0.23 4.05 16 41 H 0.33 3.54 8.99 -39.29 -0.35 3.19 16 42 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 43 H 0.08 0.86 7.87 -51.93 -0.41 0.45 16 44 H 0.14 1.13 7.95 -52.49 -0.42 0.71 16 45 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 47 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 48 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.05 0.74 7.32 -51.93 -0.38 0.36 16 50 H 0.04 0.69 6.12 -51.93 -0.32 0.37 16 51 H 0.07 1.34 6.16 -51.93 -0.32 1.02 16 LS Contribution 385.36 15.07 5.81 5.81 Total: -1.00 -31.83 385.36 -11.03 -42.86 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -8.78 Total: 6.26 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -2.81 Total: -20.37 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.24 Total: -51.81 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.83 -11.03 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.481 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds