Wall clock time and date at job start Tue Mar 31 2020 12:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46680 * 2 1 4 4 C 1.52996 * 109.47104 * 240.00235 * 2 1 3 5 5 C 1.53004 * 109.46965 * 175.81267 * 4 2 1 6 6 C 1.50696 * 109.47003 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00310 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00084 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99652 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00207 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47047 * 59.99737 * 10 8 6 12 12 H 1.48494 * 109.47144 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46699 * 299.99626 * 10 8 6 14 14 N 1.46895 * 109.47123 * 119.99775 * 2 1 3 15 15 C 1.46846 * 111.00302 * 289.34736 * 14 2 1 16 16 C 1.53035 * 109.52855 * 185.84178 * 15 14 2 17 17 C 1.53123 * 109.27444 * 300.81861 * 16 15 14 18 18 N 1.46892 * 109.52756 * 297.68325 * 17 16 15 19 19 C 1.52999 * 109.52175 * 177.55424 * 17 16 15 20 20 C 1.50699 * 109.47265 * 180.12771 * 19 17 16 21 21 C 1.38225 * 119.62081 * 125.00503 * 20 19 17 22 22 C 1.38624 * 119.16308 * 179.97438 * 21 20 19 23 23 C 1.38671 * 118.42068 * 359.97438 * 22 21 20 24 24 C 1.38181 * 119.16325 * 0.27216 * 23 22 21 25 25 N 1.31856 * 119.61641 * 304.98073 * 20 19 17 26 26 C 1.53123 * 109.21248 * 57.62349 * 17 16 15 27 27 C 1.46847 * 111.00080 * 53.55829 * 14 2 1 28 28 H 1.08998 * 109.46680 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47160 * 299.99921 * 1 2 3 30 30 H 1.08994 * 109.47224 * 60.00155 * 1 2 3 31 31 H 1.09001 * 109.46941 * 295.80720 * 4 2 1 32 32 H 1.08992 * 109.47435 * 55.81089 * 4 2 1 33 33 H 1.09001 * 109.46844 * 299.99512 * 5 4 2 34 34 H 1.09004 * 109.46795 * 59.99800 * 5 4 2 35 35 H 0.97005 * 119.99636 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46387 * 65.82469 * 15 14 2 37 37 H 1.09005 * 109.45392 * 305.85052 * 15 14 2 38 38 H 1.08999 * 109.50866 * 180.88320 * 16 15 14 39 39 H 1.09000 * 109.50620 * 60.75851 * 16 15 14 40 40 H 1.00901 * 111.00270 * 179.87103 * 18 17 16 41 41 H 1.00900 * 111.00390 * 303.83492 * 18 17 16 42 42 H 1.09008 * 109.47106 * 60.13199 * 19 17 16 43 43 H 1.08997 * 109.47327 * 300.13104 * 19 17 16 44 44 H 1.08001 * 120.41818 * 359.97438 * 21 20 19 45 45 H 1.08001 * 120.79020 * 180.02562 * 22 21 20 46 46 H 1.08005 * 120.41918 * 180.02562 * 23 22 21 47 47 H 1.08003 * 119.61638 * 179.70268 * 24 23 22 48 48 H 1.09004 * 109.50296 * 62.31579 * 26 17 16 49 49 H 1.08996 * 109.50430 * 182.43320 * 26 17 16 50 50 H 1.08998 * 109.45984 * 294.17341 * 27 14 2 51 51 H 1.08993 * 109.46156 * 54.15480 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5665 -0.6306 -1.3030 6 6 4.0688 -1.3415 -2.5331 7 1 3.3694 -1.8106 -3.2092 8 6 5.4214 -1.3921 -2.7960 9 7 6.2730 -0.8204 -1.9730 10 14 6.0441 -2.2727 -4.3213 11 1 5.4670 -1.6345 -5.5316 12 1 7.5255 -2.1848 -4.3734 13 1 5.6348 -3.6993 -4.2709 14 7 2.0197 -0.6924 1.1994 15 6 1.7670 0.1040 2.4070 16 6 2.4166 -0.5766 3.6139 17 6 1.8329 -1.9829 3.7760 18 7 0.3912 -1.8885 4.0410 19 6 2.5222 -2.6910 4.9441 20 6 1.9491 -4.0760 5.1006 21 6 2.7936 -5.1702 5.0885 22 6 2.2563 -6.4398 5.2338 23 6 0.8836 -6.5620 5.3871 24 6 0.1017 -5.4226 5.3842 25 7 0.6479 -4.2299 5.2481 26 6 2.0655 -2.7766 2.4874 27 6 1.4274 -2.0313 1.3128 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 1.7394 -1.7682 -1.2125 32 1 1.6168 -0.2526 -2.1376 33 1 3.8672 0.4165 -1.3397 34 1 3.9897 -1.0993 -0.4145 35 1 7.2246 -0.8557 -2.1582 36 1 0.6923 0.1847 2.5705 37 1 2.1909 1.1002 2.2801 38 1 2.2155 0.0066 4.5126 39 1 3.4931 -0.6452 3.4572 40 1 -0.0173 -2.8048 4.1496 41 1 0.2089 -1.3131 4.8495 42 1 2.3579 -2.1242 5.8606 43 1 3.5918 -2.7606 4.7466 44 1 3.8586 -5.0377 4.9673 45 1 2.8919 -7.3130 5.2285 46 1 0.4308 -7.5356 5.5032 47 1 -0.9688 -5.5096 5.4983 48 1 3.1364 -2.8808 2.3125 49 1 1.6139 -3.7641 2.5817 50 1 0.3544 -1.9406 1.4815 51 1 1.6047 -2.5861 0.3915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:21 Heat of formation + Delta-G solvation = 9.317415 kcal Electronic energy + Delta-G solvation = -27681.077837 eV Core-core repulsion = 24192.687996 eV Total energy + Delta-G solvation = -3488.389841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.55482 -40.38228 -37.85075 -35.38950 -33.88188 -33.26034 -32.44788 -31.73972 -31.04789 -29.63104 -28.02959 -27.00850 -24.42397 -24.31823 -24.24540 -23.11544 -22.15494 -20.72471 -19.49936 -18.33915 -17.79264 -17.26860 -17.06795 -16.56635 -16.50637 -16.36275 -15.71877 -15.48023 -15.42070 -15.02479 -14.55546 -14.53900 -14.39693 -14.27111 -13.93079 -13.67923 -13.44580 -13.34080 -13.14031 -13.09462 -12.88811 -12.79665 -12.53578 -12.49846 -12.35578 -12.23858 -12.09017 -11.65283 -11.47354 -11.35229 -11.19754 -11.02208 -10.86219 -10.77008 -10.46792 -10.44181 -9.90007 -9.28965 -8.75775 -8.11515 -6.22033 0.19620 0.35360 1.39646 1.43144 1.50806 2.44650 2.84069 3.15814 3.20304 3.29538 3.60521 3.85833 3.90567 4.03303 4.03861 4.11574 4.16643 4.25487 4.28357 4.36931 4.46774 4.49086 4.54783 4.65307 4.66317 4.70766 4.78443 4.80248 4.83832 4.87255 4.93585 5.00042 5.05448 5.09157 5.11512 5.15519 5.23926 5.26845 5.30749 5.31141 5.36489 5.44658 5.54951 5.61950 5.80385 5.92463 6.05444 6.36226 6.46178 6.51617 6.57228 6.93991 6.97216 7.04260 7.45513 8.99488 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.003416 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.828803 B = 8194.079861 C = 9371.620937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.087 3.913 3 H 0.064 0.936 4 C -0.090 4.090 5 C 0.044 3.956 6 C -0.544 4.544 7 H 0.053 0.947 8 C 0.001 3.999 9 N -0.930 5.930 10 Si 0.959 3.041 11 H -0.268 1.268 12 H -0.282 1.282 13 H -0.269 1.269 14 N -0.538 5.538 15 C 0.066 3.934 16 C -0.099 4.099 17 C 0.142 3.858 18 N -0.835 5.835 19 C -0.099 4.099 20 C 0.122 3.878 21 C -0.185 4.185 22 C -0.077 4.077 23 C -0.180 4.180 24 C 0.090 3.910 25 N -0.501 5.501 26 C -0.090 4.090 27 C 0.072 3.928 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.048 0.952 33 H -0.022 1.022 34 H 0.003 0.997 35 H 0.261 0.739 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.355 0.645 41 H 0.338 0.662 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.139 0.861 45 H 0.155 0.845 46 H 0.160 0.840 47 H 0.178 0.822 48 H 0.050 0.950 49 H 0.050 0.950 50 H 0.048 0.952 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.919 -8.487 19.511 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.021 4.021 3 H 0.083 0.917 4 C -0.127 4.127 5 C 0.007 3.993 6 C -0.583 4.583 7 H 0.071 0.929 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.784 3.216 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.194 1.194 14 N -0.263 5.263 15 C -0.061 4.061 16 C -0.137 4.137 17 C 0.048 3.952 18 N -0.372 5.372 19 C -0.139 4.139 20 C -0.015 4.015 21 C -0.205 4.205 22 C -0.103 4.103 23 C -0.199 4.199 24 C -0.067 4.067 25 N -0.212 5.212 26 C -0.128 4.128 27 C -0.055 4.055 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.067 0.933 33 H -0.004 1.004 34 H 0.022 0.978 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.176 0.824 41 H 0.151 0.849 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.157 0.843 45 H 0.173 0.827 46 H 0.178 0.822 47 H 0.195 0.805 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.066 0.934 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.829 -7.458 18.779 23.935 hybrid contribution 0.817 -1.462 0.032 1.675 sum -12.012 -8.919 18.811 24.035 Atomic orbital electron populations 1.22301 0.96207 1.01919 1.02171 1.21630 0.93107 0.97142 0.90259 0.91739 1.21513 0.96959 0.98748 0.95517 1.18757 0.91664 0.93911 0.94947 1.21769 0.92402 1.34830 1.09252 0.92912 1.25922 0.97329 0.96494 0.99892 1.70120 1.02424 1.45805 1.38728 0.85600 0.77068 0.79228 0.79720 1.19289 1.20734 1.19402 1.61992 1.59180 1.02853 1.02242 1.21926 0.99190 0.95722 0.89308 1.21592 0.99602 0.94787 0.97725 1.20484 0.88819 0.93974 0.91911 1.59156 1.10355 1.21595 1.46056 1.21429 1.00669 0.91380 1.00382 1.21280 0.89589 0.96098 0.94496 1.22220 1.01927 0.93643 1.02688 1.21957 0.96162 0.97878 0.94258 1.22441 0.94494 1.01388 1.01587 1.23241 1.01726 0.87435 0.94273 1.67133 1.12752 1.27579 1.13780 1.21454 0.99816 0.97208 0.94346 1.21806 0.96930 0.89735 0.97057 0.92746 0.91919 0.91880 0.93731 0.93327 1.00390 0.97833 0.93029 0.93231 0.92320 0.89813 0.92299 0.82356 0.84932 0.89187 0.89846 0.84279 0.82744 0.82205 0.80506 0.93129 0.93087 0.93373 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.96 8.44 71.98 0.61 -4.35 16 2 C 0.09 3.20 2.31 44.92 0.10 3.31 16 3 H 0.06 2.47 7.97 -2.39 -0.02 2.45 16 4 C -0.09 -3.97 4.55 30.59 0.14 -3.83 16 5 C 0.04 2.49 4.85 29.85 0.14 2.63 16 6 C -0.54 -32.66 9.11 25.60 0.23 -32.43 16 7 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 8 C 0.00 0.07 5.46 84.66 0.46 0.53 16 9 N -0.93 -58.81 13.29 21.45 0.28 -58.52 16 10 Si 0.96 45.95 29.54 68.60 2.03 47.98 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 N -0.54 -19.17 4.02 -871.12 -3.50 -22.68 16 15 C 0.07 1.94 5.00 86.33 0.43 2.38 16 16 C -0.10 -2.49 5.02 30.65 0.15 -2.34 16 17 C 0.14 3.39 0.58 3.61 0.00 3.39 16 18 N -0.83 -18.54 7.41 -151.25 -1.12 -19.66 16 19 C -0.10 -2.02 4.90 29.85 0.15 -1.88 16 20 C 0.12 2.52 4.96 42.55 0.21 2.73 16 21 C -0.19 -3.46 9.71 22.36 0.22 -3.24 16 22 C -0.08 -1.15 10.18 22.47 0.23 -0.92 16 23 C -0.18 -2.38 10.11 22.36 0.23 -2.16 16 24 C 0.09 1.40 11.18 84.67 0.95 2.34 16 25 N -0.50 -9.92 7.14 -183.88 -1.31 -11.23 16 26 C -0.09 -2.69 4.76 30.65 0.15 -2.55 16 27 C 0.07 2.44 4.38 86.33 0.38 2.82 16 28 H 0.05 1.62 6.46 -2.39 -0.02 1.61 16 29 H 0.06 1.69 6.84 -2.39 -0.02 1.67 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 31 H 0.04 1.98 6.28 -2.39 -0.01 1.96 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 34 H 0.00 0.20 7.73 -2.39 -0.02 0.18 16 35 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 36 H 0.05 1.39 6.44 -2.39 -0.02 1.37 16 37 H 0.06 1.75 8.01 -2.38 -0.02 1.73 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.35 8.09 5.79 -89.69 -0.52 7.57 16 41 H 0.34 6.60 8.99 -89.69 -0.81 5.79 16 42 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.08 1.70 7.87 -2.39 -0.02 1.68 16 44 H 0.14 2.33 7.95 -2.91 -0.02 2.31 16 45 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 46 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 47 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 48 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 49 H 0.05 1.51 7.32 -2.39 -0.02 1.49 16 50 H 0.05 1.55 6.12 -2.39 -0.01 1.54 16 51 H 0.04 1.72 6.16 -2.39 -0.01 1.71 16 Total: -1.00 -69.86 385.36 0.74 -69.11 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -0.41 Total: 28.57 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 4.78 Total: -33.57 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -5.65 Total: -112.09 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -69.86 0.74 -69.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.429 kcal (2) G-P(sol) polarization free energy of solvation -69.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds