Wall clock time and date at job start Tue Mar 31 2020 11:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99753 * 2 1 4 4 H 1.48503 * 109.47484 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47134 * 300.00054 * 3 2 1 6 6 H 1.48501 * 109.47388 * 60.00333 * 3 2 1 7 7 C 1.37874 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00295 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00076 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47347 * 180.02562 * 9 7 2 11 11 C 1.34766 * 119.99900 * 180.02562 * 10 9 7 12 12 O 1.21564 * 120.00379 * 359.97438 * 11 10 9 13 13 C 1.47765 * 119.99974 * 179.97438 * 11 10 9 14 14 C 1.40009 * 120.56125 * 0.02562 * 13 11 10 15 15 C 1.38432 * 118.29441 * 179.97438 * 14 13 11 16 16 Br 1.89104 * 120.34024 * 179.97438 * 15 14 13 17 17 C 1.38445 * 119.32202 * 359.97438 * 15 14 13 18 18 N 1.31909 * 121.09087 * 359.97438 * 17 15 14 19 19 C 1.31821 * 121.86953 * 0.02562 * 18 17 15 20 20 Cl 1.73601 * 119.72355 * 179.97438 * 19 18 17 21 21 H 0.96993 * 120.00437 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.47079 * 60.00244 * 9 7 2 23 23 H 1.08999 * 109.46935 * 300.00198 * 9 7 2 24 24 H 0.96999 * 119.99712 * 359.97438 * 10 9 7 25 25 H 1.07999 * 120.85333 * 359.97438 * 14 13 11 26 26 H 1.07997 * 119.45411 * 179.72699 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5589 -5.1055 -0.0011 13 6 2.7142 -6.0064 -0.0016 14 6 4.0932 -5.7640 -0.0011 15 6 4.9505 -6.8510 -0.0011 16 35 6.8235 -6.5903 -0.0011 17 6 4.4226 -8.1308 -0.0011 18 7 3.1186 -8.3298 -0.0006 19 6 2.2616 -7.3281 -0.0006 20 17 0.5565 -7.6540 -0.0005 21 1 -0.4850 0.8399 0.0004 22 1 0.6242 -2.5567 -0.8902 23 1 0.6248 -2.5571 0.8897 24 1 3.1569 -3.4353 -0.0009 25 1 4.4782 -4.7550 -0.0007 26 1 5.0894 -8.9803 -0.0056 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050045533.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:49 Heat of formation + Delta-G solvation = -20.548329 kcal Electronic energy + Delta-G solvation = -15812.759006 eV Core-core repulsion = 12770.038584 eV Total energy + Delta-G solvation = -3042.720422 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 317.951 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.89368 -40.08473 -37.80219 -36.24017 -34.80458 -34.17530 -33.34468 -30.64023 -29.39753 -26.22689 -25.06098 -23.99272 -21.77547 -19.74012 -18.56921 -18.34422 -17.69107 -16.82182 -16.58001 -16.20760 -15.74544 -15.52954 -15.14110 -14.54392 -14.02964 -13.93148 -13.78485 -13.33231 -12.95744 -12.75792 -12.47568 -12.17822 -12.09912 -11.64972 -11.45105 -11.32148 -11.20331 -10.81772 -10.57232 -10.10434 -9.85028 -8.28353 -6.44502 -0.86590 -0.45925 0.17648 0.66473 1.45374 1.45680 1.58928 1.62308 2.11838 2.36073 2.42333 3.07516 3.13768 3.32390 3.37979 3.42981 4.03299 4.13793 4.46078 4.85361 5.11390 5.25024 5.41006 5.61960 5.83433 6.18520 6.63113 6.74794 7.18882 7.33502 8.83772 Molecular weight = 317.95amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.004540 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.887167 B = 6165.661343 C = 8351.404841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.981 3.019 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.268 3.732 10 N -0.695 5.695 11 C 0.540 3.460 12 O -0.559 6.559 13 C -0.170 4.170 14 C 0.005 3.995 15 C -0.151 4.151 16 Br 0.009 6.991 17 C 0.180 3.820 18 N -0.483 5.483 19 C 0.219 3.781 20 Cl 0.002 6.998 21 H 0.268 0.732 22 H -0.005 1.005 23 H -0.005 1.005 24 H 0.406 0.594 25 H 0.177 0.823 26 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.957 -15.769 -0.006 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.805 3.195 4 H -0.174 1.174 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.145 3.855 10 N -0.345 5.345 11 C 0.325 3.675 12 O -0.439 6.439 13 C -0.178 4.178 14 C -0.023 4.023 15 C -0.233 4.233 16 Br 0.094 6.906 17 C 0.020 3.980 18 N -0.194 5.194 19 C 0.055 3.945 20 Cl 0.031 6.969 21 H 0.077 0.923 22 H 0.013 0.987 23 H 0.013 0.987 24 H 0.243 0.757 25 H 0.194 0.806 26 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 17.150 -16.562 -0.006 23.842 hybrid contribution -0.253 1.694 0.000 1.713 sum 16.897 -14.868 -0.006 22.507 Atomic orbital electron populations 1.70130 1.08203 1.28490 1.49937 1.26004 0.95723 1.03739 0.93912 0.85156 0.79258 0.77542 0.77557 1.17450 1.20653 1.20642 1.21626 0.94401 0.90378 1.52867 0.89599 1.18643 0.88459 0.83558 0.94797 1.46084 1.11430 1.04972 1.72023 1.18246 0.87996 0.83379 0.77878 1.90830 1.17169 1.84817 1.51041 1.20594 0.94836 0.93291 1.09033 1.22028 0.89666 1.01358 0.89251 1.23041 0.94301 0.96457 1.09455 1.96858 0.98921 1.97390 1.97466 1.23629 0.89640 0.96468 0.88227 1.67416 1.03757 1.33457 1.14798 1.22026 0.89430 0.88786 0.94298 1.98468 1.07244 1.95834 1.95324 0.92274 0.98694 0.98702 0.75704 0.80606 0.76683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.65 13.29 21.45 0.28 -54.36 15 2 C 0.01 0.33 5.46 84.65 0.46 0.79 15 3 Si 0.98 41.06 29.54 68.60 2.03 43.09 15 4 H -0.25 -9.61 7.11 99.48 0.71 -8.90 15 5 H -0.28 -11.64 7.11 99.48 0.71 -10.93 15 6 H -0.28 -11.63 7.11 99.48 0.71 -10.93 15 7 C -0.55 -28.90 9.28 25.60 0.24 -28.67 15 8 H 0.09 4.00 7.60 -2.91 -0.02 3.97 15 9 C 0.27 14.06 5.43 85.63 0.46 14.52 15 10 N -0.69 -28.08 5.50 -469.80 -2.59 -30.67 15 11 C 0.54 21.41 7.77 86.76 0.67 22.09 15 12 O -0.56 -26.44 14.00 -3.92 -0.05 -26.50 15 13 C -0.17 -5.14 5.89 -19.97 -0.12 -5.26 15 14 C 0.00 0.10 9.40 22.75 0.21 0.32 15 15 C -0.15 -2.66 6.24 22.37 0.14 -2.52 15 16 Br 0.01 0.12 33.73 -20.37 -0.69 -0.57 15 17 C 0.18 3.12 10.93 84.73 0.93 4.05 15 18 N -0.48 -11.94 10.33 -185.53 -1.92 -13.86 15 19 C 0.22 6.60 7.31 85.05 0.62 7.22 15 20 Cl 0.00 0.07 26.20 -2.72 -0.07 0.00 15 21 H 0.27 14.76 8.31 -92.71 -0.77 13.99 15 22 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 15 23 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 15 24 H 0.41 13.20 6.43 -92.71 -0.60 12.60 15 25 H 0.18 3.20 6.52 -2.91 -0.02 3.18 15 26 H 0.22 1.97 8.06 -2.91 -0.02 1.95 15 Total: -1.00 -67.28 274.80 1.27 -66.01 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 0.65 Total: 4.31 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 3.62 Total: 12.54 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -4.22 Total: -98.89 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.05 Total: -26.50 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -0.07 Total: 0.00 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -0.69 Total: -0.57 kcal Total: -67.28 1.27 -66.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050045533.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.465 kcal (2) G-P(sol) polarization free energy of solvation -67.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds