Wall clock time and date at job start Tue Mar 31 2020 12:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 120.00037 * 2 1 4 4 C 1.50699 * 109.47034 * 270.00252 * 3 2 1 5 5 H 1.08008 * 119.99940 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99860 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99647 * 179.97438 * 6 4 3 8 8 Si 1.86792 * 120.00115 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.47385 * 89.99592 * 8 6 4 10 10 H 1.48497 * 109.47247 * 209.99683 * 8 6 4 11 11 H 1.48502 * 109.47185 * 329.99454 * 8 6 4 12 12 C 1.34775 * 119.99983 * 180.02562 * 2 1 3 13 13 S 1.71204 * 120.00125 * 179.97438 * 12 2 1 14 14 N 1.34777 * 119.99964 * 359.97438 * 12 2 1 15 15 C 1.39953 * 119.99766 * 184.27575 * 14 12 2 16 16 C 1.38842 * 120.07004 * 312.65549 * 15 14 12 17 17 C 1.38225 * 119.92937 * 179.74392 * 16 15 14 18 18 Cl 1.73602 * 119.96886 * 180.25439 * 17 16 15 19 19 C 1.38409 * 120.06386 * 0.51104 * 17 16 15 20 20 C 1.38251 * 120.14044 * 359.76531 * 19 17 16 21 21 C 1.38227 * 120.06721 * 359.97438 * 20 19 17 22 22 Cl 1.73595 * 120.02987 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.46624 * 269.99621 * 1 2 3 24 24 H 1.08993 * 109.47239 * 29.99474 * 1 2 3 25 25 H 1.09000 * 109.47282 * 150.00344 * 1 2 3 26 26 H 1.09001 * 109.47048 * 29.99944 * 3 2 1 27 27 H 1.08996 * 109.47055 * 150.00123 * 3 2 1 28 28 H 0.97010 * 119.99939 * 179.97438 * 7 6 4 29 29 H 0.96997 * 120.00244 * 4.00157 * 14 12 2 30 30 H 1.07995 * 120.03271 * 359.97438 * 16 15 14 31 31 H 1.08004 * 119.93013 * 179.74054 * 19 17 16 32 32 H 1.08004 * 119.96592 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0973 1.0961 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.3455 3.2573 -2.9127 8 14 3.7330 3.9292 -0.2530 9 1 5.1065 3.5081 0.1229 10 1 3.7478 5.3559 -0.6644 11 1 2.8271 3.7593 0.9114 12 6 2.1389 -1.1672 -0.0005 13 16 3.8510 -1.1672 -0.0012 14 7 1.4650 -2.3344 -0.0005 15 6 2.1619 -3.5447 0.0893 16 6 3.2692 -3.7714 -0.7171 17 6 3.9585 -4.9658 -0.6222 18 17 5.3470 -5.2477 -1.6254 19 6 3.5396 -5.9393 0.2680 20 6 2.4341 -5.7188 1.0682 21 6 1.7438 -4.5243 0.9818 22 17 0.3553 -4.2487 1.9866 23 1 -0.3632 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6085 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 3.8218 4.0837 -3.0900 29 1 0.4968 -2.3354 -0.0588 30 1 3.5937 -3.0140 -1.4151 31 1 4.0774 -6.8734 0.3374 32 1 2.1094 -6.4805 1.7616 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059113735.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:17 Heat of formation + Delta-G solvation = 48.305675 kcal Electronic energy + Delta-G solvation = -19431.622946 eV Core-core repulsion = 16184.901909 eV Total energy + Delta-G solvation = -3246.721037 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29177 -38.52505 -36.88641 -36.35088 -35.31860 -32.62723 -30.76523 -30.00872 -28.76825 -27.24626 -23.93610 -22.97110 -22.12625 -21.04182 -18.58175 -17.84087 -17.11145 -16.68987 -15.95783 -15.77798 -14.89672 -14.73159 -14.32131 -14.01667 -13.94354 -13.68425 -12.68926 -12.59346 -12.48432 -12.41341 -12.33628 -11.99421 -11.80158 -11.24648 -11.11051 -10.98737 -10.93394 -10.66200 -10.53919 -10.34265 -9.72590 -9.32933 -8.80690 -8.64693 -8.26355 -7.13873 -6.52974 -6.15072 -4.15513 0.73152 1.05419 1.80521 1.88678 2.11229 2.39008 2.97800 3.26990 3.31455 3.37971 3.38449 3.54283 4.34938 4.56195 4.85143 4.95609 5.03403 5.08320 5.17463 5.32245 5.50697 5.65577 5.74554 5.91224 6.04676 6.14022 6.28818 6.60667 6.62662 6.94068 7.20454 7.42463 7.57314 8.35058 8.83287 9.42132 10.97760 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.014823 B = 0.004602 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.492160 B = 6082.741884 C = 7474.536525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.529 5.529 3 C 0.207 3.793 4 C -0.526 4.526 5 H 0.075 0.925 6 C 0.082 3.918 7 N -0.891 5.891 8 Si 0.874 3.126 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.552 3.448 13 S -0.617 6.617 14 N -0.650 5.650 15 C 0.167 3.833 16 C -0.047 4.047 17 C -0.027 4.027 18 Cl -0.059 7.059 19 C -0.100 4.100 20 C -0.100 4.100 21 C -0.045 4.045 22 Cl -0.065 7.065 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.061 0.939 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.266 0.734 29 H 0.405 0.595 30 H 0.169 0.831 31 H 0.141 0.859 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.302 -17.923 7.888 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.231 5.231 3 C 0.087 3.913 4 C -0.564 4.564 5 H 0.093 0.907 6 C -0.122 4.122 7 N -0.529 5.529 8 Si 0.701 3.299 9 H -0.193 1.193 10 H -0.211 1.211 11 H -0.192 1.192 12 C 0.195 3.805 13 S -0.482 6.482 14 N -0.281 5.281 15 C 0.071 3.929 16 C -0.071 4.071 17 C -0.056 4.056 18 Cl -0.030 7.030 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.075 4.075 22 Cl -0.036 7.036 23 H 0.084 0.916 24 H 0.117 0.883 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.246 0.754 30 H 0.186 0.814 31 H 0.159 0.841 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.168 -17.479 7.789 20.105 hybrid contribution -1.080 0.739 0.578 1.430 sum -7.248 -16.740 8.367 20.069 Atomic orbital electron populations 1.22065 0.80207 1.04196 1.02181 1.47400 1.06384 1.05915 1.63428 1.20403 0.93817 0.76761 1.00339 1.20958 1.38140 1.07379 0.89938 0.90715 1.24710 0.94746 0.97160 0.95557 1.69872 1.40891 1.23489 1.18648 0.86887 0.80680 0.79700 0.82658 1.19333 1.21091 1.19246 1.22285 0.95675 0.81021 0.81488 1.93227 0.89093 1.92538 1.73341 1.42164 1.09498 1.02378 1.74107 1.16810 0.95662 0.84556 0.95852 1.21496 0.92489 0.94966 0.98178 1.20665 0.92511 0.95308 0.97155 1.98382 1.40636 1.96039 1.67903 1.20974 0.96604 0.99159 0.95253 1.20671 0.95191 0.95698 1.00516 1.20902 0.93820 0.97172 0.95587 1.98364 1.40901 1.96504 1.67860 0.91598 0.88320 0.91994 0.94347 0.91094 0.92365 0.75450 0.81354 0.84104 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.78 10.24 59.85 0.61 1.39 16 2 N -0.53 -9.84 2.86 -185.00 -0.53 -10.37 16 3 C 0.21 4.68 3.99 -5.19 -0.02 4.66 16 4 C -0.53 -14.20 9.94 -34.44 -0.34 -14.54 16 5 H 0.07 2.24 8.06 -52.48 -0.42 1.81 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 7 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 8 Si 0.87 20.98 27.47 -169.99 -4.67 16.31 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 12 C 0.55 10.40 7.56 -86.92 -0.66 9.74 16 13 S -0.62 -14.15 24.40 -107.50 -2.62 -16.77 16 14 N -0.65 -9.51 4.72 -11.38 -0.05 -9.57 16 15 C 0.17 2.38 5.87 -83.66 -0.49 1.88 16 16 C -0.05 -0.72 7.66 -39.36 -0.30 -1.02 16 17 C -0.03 -0.35 6.32 -39.52 -0.25 -0.60 16 18 Cl -0.06 -0.76 28.95 -51.86 -1.50 -2.26 16 19 C -0.10 -1.03 9.82 -39.51 -0.39 -1.42 16 20 C -0.10 -0.99 9.82 -39.58 -0.39 -1.38 16 21 C -0.04 -0.53 6.34 -39.32 -0.25 -0.78 16 22 Cl -0.07 -0.68 28.21 -51.86 -1.46 -2.14 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 25 H 0.06 0.65 6.31 -51.93 -0.33 0.32 16 26 H 0.04 0.82 7.13 -51.93 -0.37 0.45 16 27 H 0.07 1.75 6.01 -51.93 -0.31 1.44 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.40 4.77 6.20 -40.82 -0.25 4.51 16 30 H 0.17 3.05 6.31 -49.80 -0.31 2.73 16 31 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 315.00 15.07 4.75 4.75 Total: -1.00 -32.41 315.00 -10.75 -43.15 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -2.85 Total: 2.70 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -2.57 Total: 0.14 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.19 Total: -45.88 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Atomic # 16 Polarization: -14.15 SS G_CDS: -2.62 Total: -16.77 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -2.96 Total: -4.40 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.41 -10.75 -43.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059113735.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.459 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds