Wall clock time and date at job start Tue Mar 31 2020 12:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 120.00037 * 2 1 4 4 C 1.50699 * 109.47034 * 270.00252 * 3 2 1 5 5 H 1.08008 * 119.99940 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99860 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99647 * 179.97438 * 6 4 3 8 8 Si 1.86792 * 120.00115 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.47385 * 89.99592 * 8 6 4 10 10 H 1.48497 * 109.47247 * 209.99683 * 8 6 4 11 11 H 1.48502 * 109.47185 * 329.99454 * 8 6 4 12 12 C 1.34775 * 119.99983 * 180.02562 * 2 1 3 13 13 S 1.71204 * 120.00125 * 179.97438 * 12 2 1 14 14 N 1.34777 * 119.99964 * 359.97438 * 12 2 1 15 15 C 1.39953 * 119.99766 * 184.27575 * 14 12 2 16 16 C 1.38842 * 120.07004 * 312.65549 * 15 14 12 17 17 C 1.38225 * 119.92937 * 179.74392 * 16 15 14 18 18 Cl 1.73602 * 119.96886 * 180.25439 * 17 16 15 19 19 C 1.38409 * 120.06386 * 0.51104 * 17 16 15 20 20 C 1.38251 * 120.14044 * 359.76531 * 19 17 16 21 21 C 1.38227 * 120.06721 * 359.97438 * 20 19 17 22 22 Cl 1.73595 * 120.02987 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.46624 * 269.99621 * 1 2 3 24 24 H 1.08993 * 109.47239 * 29.99474 * 1 2 3 25 25 H 1.09000 * 109.47282 * 150.00344 * 1 2 3 26 26 H 1.09001 * 109.47048 * 29.99944 * 3 2 1 27 27 H 1.08996 * 109.47055 * 150.00123 * 3 2 1 28 28 H 0.97010 * 119.99939 * 179.97438 * 7 6 4 29 29 H 0.96997 * 120.00244 * 4.00157 * 14 12 2 30 30 H 1.07995 * 120.03271 * 359.97438 * 16 15 14 31 31 H 1.08004 * 119.93013 * 179.74054 * 19 17 16 32 32 H 1.08004 * 119.96592 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0973 1.0961 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.3455 3.2573 -2.9127 8 14 3.7330 3.9292 -0.2530 9 1 5.1065 3.5081 0.1229 10 1 3.7478 5.3559 -0.6644 11 1 2.8271 3.7593 0.9114 12 6 2.1389 -1.1672 -0.0005 13 16 3.8510 -1.1672 -0.0012 14 7 1.4650 -2.3344 -0.0005 15 6 2.1619 -3.5447 0.0893 16 6 3.2692 -3.7714 -0.7171 17 6 3.9585 -4.9658 -0.6222 18 17 5.3470 -5.2477 -1.6254 19 6 3.5396 -5.9393 0.2680 20 6 2.4341 -5.7188 1.0682 21 6 1.7438 -4.5243 0.9818 22 17 0.3553 -4.2487 1.9866 23 1 -0.3632 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6085 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 3.8218 4.0837 -3.0900 29 1 0.4968 -2.3354 -0.0588 30 1 3.5937 -3.0140 -1.4151 31 1 4.0774 -6.8734 0.3374 32 1 2.1094 -6.4805 1.7616 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059113735.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:16 Heat of formation + Delta-G solvation = 29.376858 kcal Electronic energy + Delta-G solvation = -19432.443761 eV Core-core repulsion = 16184.901909 eV Total energy + Delta-G solvation = -3247.541852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.45502 -39.79538 -37.83761 -37.38196 -36.57954 -34.66482 -31.76745 -31.30756 -30.24530 -28.65207 -25.45645 -24.12249 -23.40927 -22.47118 -19.80939 -19.18769 -19.14944 -17.75517 -17.14735 -17.03896 -16.46038 -15.97009 -15.81896 -15.35976 -14.94879 -14.91771 -14.49846 -13.89660 -13.72703 -13.46687 -13.40240 -13.30973 -13.07836 -12.83976 -12.52914 -12.25685 -12.12454 -12.05211 -11.94141 -11.89989 -11.74898 -10.81376 -10.65052 -9.90107 -9.42450 -8.83213 -8.31457 -8.23007 -6.35493 -0.31715 0.03851 0.51160 0.85602 0.89746 1.13509 1.34110 1.43213 1.45260 1.57074 2.23426 2.33389 2.40800 3.05773 3.64123 3.90573 3.96391 4.02755 4.11162 4.33213 4.46261 4.62706 4.68541 4.78022 4.86969 4.96848 5.04110 5.18107 5.36488 5.44628 5.51018 5.73820 6.20647 6.20917 6.62771 7.25760 8.85491 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.014823 B = 0.004602 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.492160 B = 6082.741884 C = 7474.536525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.534 5.534 3 C 0.217 3.783 4 C -0.519 4.519 5 H 0.030 0.970 6 C 0.022 3.978 7 N -0.943 5.943 8 Si 0.940 3.060 9 H -0.281 1.281 10 H -0.279 1.279 11 H -0.234 1.234 12 C 0.573 3.427 13 S -0.714 6.714 14 N -0.625 5.625 15 C 0.141 3.859 16 C -0.067 4.067 17 C -0.037 4.037 18 Cl -0.065 7.065 19 C -0.084 4.084 20 C -0.086 4.086 21 C -0.040 4.040 22 Cl -0.047 7.047 23 H 0.102 0.898 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.267 0.733 29 H 0.421 0.579 30 H 0.131 0.869 31 H 0.175 0.825 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.446 -19.735 10.766 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.236 5.236 3 C 0.095 3.905 4 C -0.558 4.558 5 H 0.049 0.951 6 C -0.177 4.177 7 N -0.583 5.583 8 Si 0.763 3.237 9 H -0.207 1.207 10 H -0.204 1.204 11 H -0.156 1.156 12 C 0.211 3.789 13 S -0.581 6.581 14 N -0.257 5.257 15 C 0.046 3.954 16 C -0.091 4.091 17 C -0.066 4.066 18 Cl -0.036 7.036 19 C -0.103 4.103 20 C -0.106 4.106 21 C -0.070 4.070 22 Cl -0.018 7.018 23 H 0.120 0.880 24 H 0.115 0.885 25 H 0.106 0.894 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.265 0.735 30 H 0.149 0.851 31 H 0.192 0.808 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.398 -19.366 10.680 23.656 hybrid contribution -0.544 1.099 -0.358 1.277 sum -8.942 -18.267 10.322 22.808 Atomic orbital electron populations 1.22462 0.76445 1.05523 1.04907 1.47324 1.08549 1.04571 1.63108 1.20024 0.94239 0.78999 0.97205 1.21124 1.37054 1.06423 0.91191 0.95148 1.25619 0.95062 0.98866 0.98134 1.70026 1.42653 1.24419 1.21208 0.85839 0.79821 0.77750 0.80282 1.20659 1.20444 1.15646 1.21733 0.94010 0.82294 0.80824 1.93391 0.93757 1.93687 1.77255 1.41964 1.10130 1.01418 1.72142 1.16948 0.96242 0.84810 0.97439 1.21207 0.93874 0.95383 0.98645 1.20828 0.92314 0.95499 0.97979 1.98377 1.40996 1.95954 1.68294 1.21375 0.96309 0.99335 0.93317 1.21153 0.93953 0.95461 0.99998 1.20999 0.94248 0.96882 0.94857 1.98375 1.39841 1.96509 1.67108 0.87964 0.88499 0.89380 0.91686 0.92877 0.92357 0.73493 0.85134 0.80755 0.80018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.17 10.24 127.77 1.31 2.48 16 2 N -0.53 -19.34 2.86 -739.20 -2.11 -21.45 16 3 C 0.22 9.71 3.99 85.63 0.34 10.05 16 4 C -0.52 -28.80 9.94 25.60 0.25 -28.54 16 5 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 6 C 0.02 1.25 5.47 84.65 0.46 1.71 16 7 N -0.94 -58.68 13.96 21.45 0.30 -58.38 16 8 Si 0.94 43.54 27.47 68.60 1.88 45.43 16 9 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.23 -9.44 6.54 99.48 0.65 -8.79 16 12 C 0.57 21.55 7.56 179.05 1.35 22.91 16 13 S -0.71 -34.17 24.40 -56.49 -1.38 -35.55 16 14 N -0.62 -17.59 4.72 -189.90 -0.90 -18.48 16 15 C 0.14 3.86 5.87 38.16 0.22 4.09 16 16 C -0.07 -2.10 7.66 22.41 0.17 -1.93 16 17 C -0.04 -0.95 6.32 22.31 0.14 -0.81 16 18 Cl -0.07 -1.70 28.95 -2.72 -0.08 -1.77 16 19 C -0.08 -1.47 9.82 22.31 0.22 -1.25 16 20 C -0.09 -1.35 9.82 22.27 0.22 -1.13 16 21 C -0.04 -0.83 6.34 22.44 0.14 -0.69 16 22 Cl -0.05 -0.82 28.21 -2.72 -0.08 -0.89 16 23 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.10 2.36 8.07 -2.39 -0.02 2.34 16 25 H 0.09 1.57 6.31 -2.39 -0.02 1.55 16 26 H 0.07 2.60 7.13 -2.39 -0.02 2.59 16 27 H 0.05 2.63 6.01 -2.39 -0.01 2.61 16 28 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 29 H 0.42 8.89 6.20 -92.71 -0.57 8.32 16 30 H 0.13 5.12 6.31 -4.62 -0.03 5.09 16 31 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 32 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -76.40 315.00 3.02 -73.39 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.53 Total: 10.83 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 4.84 Total: 6.88 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -2.71 Total: -98.31 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.43 kcal Atomic # 16 Polarization: -34.17 SS G_CDS: -1.38 Total: -35.55 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.16 Total: -2.67 kcal Total: -76.40 3.02 -73.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059113735.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.765 kcal (2) G-P(sol) polarization free energy of solvation -76.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds