Wall clock time and date at job start Tue Mar 31 2020 11:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46907 * 110.99802 * 2 1 4 4 C 1.52997 * 109.47194 * 66.04352 * 3 2 1 5 5 C 1.50698 * 109.46931 * 180.02562 * 4 3 2 6 6 H 1.08000 * 120.00304 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00090 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99899 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00395 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47037 * 119.99786 * 9 7 5 12 12 H 1.48494 * 109.47494 * 240.00215 * 9 7 5 13 13 C 1.46894 * 111.00433 * 236.04286 * 2 1 3 14 14 C 1.53117 * 109.52323 * 298.95536 * 13 2 1 15 15 C 1.53039 * 109.27986 * 177.62191 * 14 13 2 16 16 N 1.46845 * 109.52266 * 300.82256 * 15 14 13 17 17 C 1.46905 * 111.00041 * 185.83734 * 16 15 14 18 18 C 1.52999 * 109.46937 * 169.99879 * 17 16 15 19 19 C 1.50707 * 109.46798 * 180.02562 * 18 17 16 20 20 C 1.38227 * 119.62024 * 124.97813 * 19 18 17 21 21 C 1.38627 * 119.15702 * 179.78495 * 20 19 18 22 22 C 1.38669 * 118.42389 * 0.47826 * 21 20 19 23 23 C 1.38186 * 119.16143 * 359.49762 * 22 21 20 24 24 N 1.31856 * 119.61172 * 304.99564 * 19 18 17 25 25 C 1.46848 * 111.20061 * 61.74028 * 16 15 14 26 26 C 1.53039 * 109.52440 * 298.25834 * 25 16 15 27 27 H 1.08998 * 109.47226 * 183.94935 * 1 2 3 28 28 H 1.08993 * 109.47866 * 303.96146 * 1 2 3 29 29 H 1.09012 * 109.46708 * 63.95992 * 1 2 3 30 30 H 1.08998 * 109.46738 * 186.04108 * 3 2 1 31 31 H 1.09003 * 109.46966 * 306.04224 * 3 2 1 32 32 H 1.08998 * 109.47078 * 299.99548 * 4 3 2 33 33 H 1.09003 * 109.47269 * 60.00057 * 4 3 2 34 34 H 0.96996 * 120.00129 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.52297 * 178.82473 * 13 2 1 36 36 H 1.09000 * 109.50500 * 57.67980 * 14 13 2 37 37 H 1.09000 * 109.53781 * 297.58074 * 14 13 2 38 38 H 1.09001 * 109.46335 * 180.80370 * 15 14 13 39 39 H 1.09005 * 109.45376 * 60.83029 * 15 14 13 40 40 H 1.08996 * 109.46637 * 49.99883 * 17 16 15 41 41 H 1.08994 * 109.46816 * 289.99688 * 17 16 15 42 42 H 1.08996 * 109.47454 * 60.00504 * 18 17 16 43 43 H 1.09007 * 109.47108 * 299.99872 * 18 17 16 44 44 H 1.07998 * 120.41916 * 359.97438 * 20 19 18 45 45 H 1.08008 * 120.78688 * 180.22921 * 21 20 19 46 46 H 1.08002 * 120.42244 * 179.78279 * 22 21 20 47 47 H 1.07996 * 119.61757 * 180.25243 * 23 22 21 48 48 H 1.08997 * 109.46319 * 58.27630 * 25 16 15 49 49 H 1.08998 * 109.46212 * 178.24266 * 25 16 15 50 50 H 1.09001 * 109.49910 * 299.24219 * 26 25 16 51 51 H 1.08997 * 109.50517 * 179.11836 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 1.3182 5 6 2.1708 3.4646 1.3179 6 1 2.7189 3.8327 0.4632 7 6 1.9647 4.2823 2.4088 8 7 1.2968 3.8343 3.4494 9 14 2.6340 6.0262 2.4088 10 1 3.3422 6.2846 1.1293 11 1 1.5114 6.9873 2.5554 12 1 3.5799 6.1935 3.5412 13 6 1.9955 -0.7660 -1.1375 14 6 1.5267 -2.2201 -1.0361 15 6 2.0286 -2.9989 -2.2541 16 7 1.5068 -2.3819 -3.4802 17 6 1.8540 -3.1831 -4.6617 18 6 1.0920 -2.6541 -5.8784 19 6 1.4477 -3.4764 -7.0902 20 6 0.4442 -4.0778 -7.8263 21 6 0.7820 -4.8283 -8.9418 22 6 2.1231 -4.9547 -9.2710 23 6 3.0710 -4.3240 -8.4879 24 7 2.7128 -3.6139 -7.4358 25 6 1.9824 -1.0000 -3.6232 26 6 1.4791 -0.1615 -2.4461 27 1 -0.3633 -1.0252 0.0708 28 1 -0.3634 0.5740 0.8523 29 1 -0.3633 0.4512 -0.9235 30 1 3.0797 1.3444 -0.1082 31 1 1.5610 1.9274 -0.8310 32 1 0.5471 2.0846 1.4264 33 1 2.0657 1.5017 2.1492 34 1 1.1521 4.4093 4.2170 35 1 3.0849 -0.7328 -1.1259 36 1 0.4374 -2.2502 -1.0084 37 1 1.9263 -2.6694 -0.1269 38 1 1.6844 -4.0313 -2.1921 39 1 3.1183 -2.9799 -2.2734 40 1 1.5823 -4.2241 -4.4872 41 1 2.9260 -3.1132 -4.8457 42 1 1.3637 -1.6130 -6.0528 43 1 0.0199 -2.7239 -5.6943 44 1 -0.5900 -3.9620 -7.5378 45 1 0.0189 -5.3067 -9.5380 46 1 2.4227 -5.5348 -10.1313 47 1 4.1172 -4.4141 -8.7399 48 1 3.0722 -0.9905 -3.6362 49 1 1.6046 -0.5806 -4.5557 50 1 0.3891 -0.1593 -2.4407 51 1 1.8452 0.8605 -2.5444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080987635.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:33 Heat of formation + Delta-G solvation = 14.531061 kcal Electronic energy + Delta-G solvation = -26091.212683 eV Core-core repulsion = 22603.048923 eV Total energy + Delta-G solvation = -3488.163760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.17748 -40.60884 -38.22599 -35.54807 -34.64347 -33.28032 -32.76585 -31.85293 -31.04107 -29.21572 -27.75554 -26.27000 -24.79286 -24.33823 -24.22572 -23.10812 -21.81012 -21.50691 -20.19872 -18.62153 -17.84876 -17.19597 -17.12113 -16.56226 -16.44705 -16.30635 -16.07274 -15.79664 -15.53940 -15.22351 -14.93056 -14.59868 -14.39538 -14.35874 -14.07302 -13.96552 -13.73418 -13.54640 -13.24843 -13.00049 -12.85166 -12.68346 -12.61724 -12.51539 -12.41590 -12.17936 -12.08437 -11.93015 -11.67772 -11.47891 -11.43815 -11.27681 -11.01594 -10.77599 -10.53167 -10.32812 -9.86103 -9.29595 -9.03856 -8.19511 -6.30581 0.19719 0.39635 1.39671 1.40176 1.53472 2.40328 2.77779 2.94435 3.12943 3.13781 3.44376 3.77833 3.86368 3.91987 4.03794 4.07079 4.15596 4.19713 4.28105 4.29503 4.35575 4.38514 4.44900 4.49419 4.57756 4.61270 4.65252 4.70044 4.74421 4.78646 4.81472 4.87213 4.89984 4.98480 5.02710 5.05324 5.10244 5.13110 5.15504 5.29518 5.31049 5.32759 5.40048 5.48810 5.68966 5.81040 5.83540 6.09313 6.12102 6.15519 6.36049 6.38740 6.86746 7.09378 7.38196 8.92777 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.027882 B = 0.001954 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.993311 B =14327.042023 C =14812.915187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.548 5.548 3 C 0.082 3.918 4 C 0.035 3.965 5 C -0.543 4.543 6 H 0.058 0.942 7 C 0.001 3.999 8 N -0.931 5.931 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.084 3.916 14 C -0.100 4.100 15 C 0.064 3.936 16 N -0.540 5.540 17 C 0.075 3.925 18 C -0.062 4.062 19 C 0.113 3.887 20 C -0.174 4.174 21 C -0.077 4.077 22 C -0.179 4.179 23 C 0.083 3.917 24 N -0.516 5.516 25 C 0.067 3.933 26 C -0.143 4.143 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.030 0.970 30 H 0.055 0.945 31 H 0.022 0.978 32 H -0.004 1.004 33 H -0.010 1.010 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.152 0.848 45 H 0.161 0.839 46 H 0.160 0.840 47 H 0.169 0.831 48 H 0.027 0.973 49 H 0.083 0.917 50 H 0.072 0.928 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.426 -21.006 -26.517 33.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.046 4.046 4 C -0.003 4.003 5 C -0.582 4.582 6 H 0.076 0.924 7 C -0.197 4.197 8 N -0.571 5.571 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.203 1.203 13 C -0.025 4.025 14 C -0.138 4.138 15 C -0.065 4.065 16 N -0.265 5.265 17 C -0.053 4.053 18 C -0.100 4.100 19 C -0.025 4.025 20 C -0.194 4.194 21 C -0.103 4.103 22 C -0.198 4.198 23 C -0.074 4.074 24 N -0.226 5.226 25 C -0.062 4.062 26 C -0.182 4.182 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.015 0.985 33 H 0.009 0.991 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.048 0.952 40 H 0.094 0.906 41 H 0.049 0.951 42 H 0.093 0.907 43 H 0.116 0.884 44 H 0.170 0.830 45 H 0.179 0.821 46 H 0.178 0.822 47 H 0.186 0.814 48 H 0.045 0.955 49 H 0.101 0.899 50 H 0.090 0.910 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.190 -20.769 -25.357 32.799 hybrid contribution 0.372 1.119 -0.754 1.399 sum -0.818 -19.651 -26.110 32.689 Atomic orbital electron populations 1.22386 0.87581 1.02145 0.99946 1.62221 1.08433 1.14109 1.42292 1.21919 0.98191 0.87124 0.97321 1.18944 0.95126 0.93633 0.92548 1.21650 1.35232 0.98981 1.02299 0.92368 1.25964 0.95455 1.03243 0.95059 1.70117 1.42004 1.38170 1.06790 0.85384 0.78204 0.78919 0.78427 1.18669 1.20268 1.20325 1.21815 0.98603 0.94312 0.87760 1.21587 1.01834 0.92886 0.97508 1.22043 0.97007 0.98634 0.88772 1.61959 1.60048 1.01989 1.02465 1.21857 0.97527 0.97158 0.88802 1.20514 1.01762 0.98161 0.89547 1.21389 0.88874 0.95805 0.96396 1.22279 1.01378 0.98987 0.96768 1.22010 0.97347 0.95442 0.95521 1.22476 0.93883 1.01411 1.02035 1.23159 1.01509 0.92516 0.90194 1.67455 1.20377 1.17438 1.17305 1.21968 0.96984 0.88797 0.98421 1.22185 1.01954 0.98648 0.95449 0.89793 0.93484 0.95190 0.92677 0.95960 0.98527 0.99123 0.92779 0.91711 0.90831 0.90892 0.89088 0.95178 0.90608 0.95134 0.90658 0.88380 0.82990 0.82114 0.82204 0.81360 0.95480 0.89851 0.90987 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 8.62 127.69 1.10 2.05 16 2 N -0.55 -20.49 4.75 -896.58 -4.26 -24.75 16 3 C 0.08 3.62 4.35 86.30 0.38 4.00 16 4 C 0.03 1.93 4.90 29.85 0.15 2.07 16 5 C -0.54 -31.86 9.11 25.60 0.23 -31.62 16 6 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 7 C 0.00 0.04 5.46 84.66 0.46 0.50 16 8 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 9 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 C 0.08 2.50 2.29 45.00 0.10 2.60 16 14 C -0.10 -2.45 5.24 30.65 0.16 -2.29 16 15 C 0.06 1.32 5.46 86.33 0.47 1.79 16 16 N -0.54 -11.25 4.66 -896.36 -4.17 -15.42 16 17 C 0.07 1.39 4.82 86.30 0.42 1.80 16 18 C -0.06 -1.03 5.54 29.85 0.17 -0.86 16 19 C 0.11 1.95 6.18 42.55 0.26 2.21 16 20 C -0.17 -2.22 9.71 22.36 0.22 -2.00 16 21 C -0.08 -0.76 10.18 22.47 0.23 -0.53 16 22 C -0.18 -1.79 10.11 22.36 0.23 -1.56 16 23 C 0.08 1.19 11.18 84.67 0.95 2.14 16 24 N -0.52 -10.14 9.88 -183.88 -1.82 -11.95 16 25 C 0.07 1.53 5.29 86.33 0.46 1.98 16 26 C -0.14 -3.89 4.69 30.65 0.14 -3.75 16 27 H 0.08 2.45 6.28 -2.39 -0.02 2.44 16 28 H 0.05 1.88 6.30 -2.39 -0.02 1.87 16 29 H 0.03 0.98 6.24 -2.38 -0.01 0.96 16 30 H 0.05 2.43 8.00 -2.39 -0.02 2.41 16 31 H 0.02 0.97 7.01 -2.39 -0.02 0.95 16 32 H 0.00 -0.21 6.47 -2.39 -0.02 -0.22 16 33 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16 36 H 0.07 1.80 6.32 -2.39 -0.02 1.79 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.09 1.59 8.02 -2.39 -0.02 1.57 16 39 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.08 1.33 7.99 -2.39 -0.02 1.31 16 41 H 0.03 0.66 7.93 -2.39 -0.02 0.64 16 42 H 0.08 1.36 6.43 -2.39 -0.02 1.35 16 43 H 0.10 1.39 7.87 -2.38 -0.02 1.37 16 44 H 0.15 1.29 7.95 -2.91 -0.02 1.27 16 45 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 46 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 47 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 48 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.08 1.74 6.21 -2.39 -0.01 1.73 16 50 H 0.07 2.00 6.27 -2.39 -0.01 1.99 16 51 H 0.05 1.65 6.90 -2.39 -0.02 1.63 16 Total: -1.00 -69.69 389.56 -0.94 -70.63 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.89 Total: 13.33 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 6.12 Total: -21.47 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -9.97 Total: -109.69 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.69 -0.94 -70.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080987635.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.158 kcal (2) G-P(sol) polarization free energy of solvation -69.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds