Wall clock time and date at job start Tue Mar 31 2020 11:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 110.99551 * 2 1 4 4 C 1.53002 * 109.47376 * 293.95391 * 3 2 1 5 5 C 1.50697 * 109.47387 * 180.02562 * 4 3 2 6 6 H 1.08001 * 119.99963 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00153 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99755 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00103 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47146 * 59.99639 * 9 7 5 11 11 H 1.48497 * 109.47156 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47331 * 299.99778 * 9 7 5 13 13 C 1.46896 * 111.00183 * 123.95252 * 2 1 3 14 14 C 1.52999 * 109.47119 * 66.04838 * 13 2 1 15 15 C 1.52993 * 109.47320 * 180.02562 * 14 13 2 16 16 C 1.53099 * 109.52781 * 294.67694 * 15 14 13 17 17 C 1.53034 * 109.29509 * 182.43453 * 16 15 14 18 18 N 1.46847 * 109.51345 * 59.18740 * 17 16 15 19 19 C 1.39170 * 110.99853 * 174.16987 * 18 17 16 20 20 C 1.39468 * 120.86749 * 359.71542 * 19 18 17 21 21 C 1.37895 * 119.06929 * 179.73383 * 20 19 18 22 22 N 1.31995 * 120.83820 * 0.55315 * 21 20 19 23 23 C 1.31991 * 121.91440 * 359.72111 * 22 21 20 24 24 C 1.37897 * 120.84247 * 359.97438 * 23 22 21 25 25 C 1.46854 * 111.19790 * 298.26320 * 18 17 16 26 26 C 1.53039 * 109.52227 * 61.74204 * 25 18 17 27 27 H 1.08998 * 109.47028 * 296.04112 * 1 2 3 28 28 H 1.09000 * 109.47423 * 56.04701 * 1 2 3 29 29 H 1.09003 * 109.46600 * 176.04797 * 1 2 3 30 30 H 1.08996 * 109.47471 * 53.95451 * 3 2 1 31 31 H 1.09000 * 109.47281 * 173.95710 * 3 2 1 32 32 H 1.09006 * 109.46964 * 300.00422 * 4 3 2 33 33 H 1.08999 * 109.47390 * 59.99864 * 4 3 2 34 34 H 0.97007 * 119.99594 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47147 * 306.04879 * 13 2 1 36 36 H 1.09003 * 109.47326 * 186.04492 * 13 2 1 37 37 H 1.09004 * 109.47103 * 59.99969 * 14 13 2 38 38 H 1.09001 * 109.47454 * 300.00195 * 14 13 2 39 39 H 1.09002 * 109.52267 * 54.87293 * 15 14 13 40 40 H 1.09007 * 109.48839 * 62.49095 * 16 15 14 41 41 H 1.09009 * 109.50682 * 302.38881 * 16 15 14 42 42 H 1.09002 * 109.46271 * 299.17460 * 17 16 15 43 43 H 1.08994 * 109.46242 * 179.19760 * 17 16 15 44 44 H 1.08005 * 120.46743 * 359.97438 * 20 19 18 45 45 H 1.07997 * 119.57949 * 180.29794 * 21 20 19 46 46 H 1.08000 * 119.58219 * 180.02562 * 23 22 21 47 47 H 1.07993 * 120.47066 * 179.97438 * 24 23 22 48 48 H 1.08993 * 109.46229 * 181.76227 * 25 18 17 49 49 H 1.09008 * 109.45803 * 301.73838 * 25 18 17 50 50 H 1.08994 * 109.50227 * 60.75933 * 26 25 18 51 51 H 1.08998 * 109.50241 * 180.83988 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1718 3.4642 -1.3185 6 1 2.7198 3.8323 -0.4637 7 6 1.9659 4.2817 -2.4095 8 7 1.2982 3.8336 -3.4502 9 14 2.6352 6.0256 -2.4096 10 1 4.1126 5.9888 -2.2625 11 1 2.2820 6.6914 -3.6891 12 1 2.0438 6.7829 -1.2773 13 6 1.9955 -0.7659 1.1376 14 6 1.6316 -2.2426 0.9703 15 6 2.1794 -3.0402 2.1554 16 6 3.7097 -3.0032 2.1336 17 6 4.2525 -3.8524 3.2852 18 7 3.7767 -5.2342 3.1424 19 6 4.3566 -6.0627 4.0985 20 6 5.2663 -5.5568 5.0267 21 6 5.8143 -6.4099 5.9613 22 7 5.4961 -7.6908 5.9771 23 6 4.6439 -8.2087 5.1124 24 6 4.0472 -7.4218 4.1499 25 6 2.3111 -5.3006 3.2079 26 6 1.7106 -4.4944 2.0540 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 1.5610 1.9274 0.8309 31 1 3.0797 1.3445 0.1082 32 1 2.0657 1.5015 -2.1492 33 1 0.5471 2.0845 -1.4266 34 1 1.1536 4.4086 -4.2180 35 1 1.5612 -0.3872 2.0627 36 1 3.0798 -0.6611 1.1756 37 1 2.0660 -2.6213 0.0451 38 1 0.5473 -2.3476 0.9323 39 1 1.8167 -2.6046 3.0865 40 1 4.0503 -1.9741 2.2483 41 1 4.0701 -3.4027 1.1856 42 1 3.9032 -3.4441 4.2336 43 1 5.3422 -3.8395 3.2637 44 1 5.5348 -4.5107 5.0162 45 1 6.5159 -6.0258 6.6870 46 1 4.4103 -9.2621 5.1598 47 1 3.3512 -7.8520 3.4451 48 1 1.9908 -6.3395 3.1305 49 1 1.9708 -4.8853 4.1566 50 1 2.0394 -4.9174 1.1048 51 1 0.6227 -4.5315 2.1116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092820973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:39 Heat of formation + Delta-G solvation = 29.484350 kcal Electronic energy + Delta-G solvation = -25888.544063 eV Core-core repulsion = 22401.028726 eV Total energy + Delta-G solvation = -3487.515337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.11799 -39.20899 -37.47912 -35.39731 -33.09944 -32.12457 -31.60789 -30.89687 -29.90354 -28.34882 -26.36905 -24.98141 -24.69293 -23.35719 -22.61108 -22.05618 -20.68297 -20.03214 -19.80841 -18.18491 -16.70401 -16.46809 -16.08670 -15.57866 -15.21655 -15.10254 -14.85805 -14.64571 -14.57502 -14.26012 -14.12511 -13.99573 -13.89951 -13.31348 -13.23113 -12.92258 -12.51368 -12.17664 -12.10304 -11.96423 -11.79476 -11.57801 -11.20663 -11.08173 -11.01370 -10.90990 -10.85704 -10.68114 -10.55998 -10.43352 -10.20228 -9.84387 -9.82450 -9.53280 -9.33340 -9.12992 -8.59096 -8.32820 -7.71574 -5.99474 -4.01929 0.80713 0.92946 3.15240 3.32873 3.37386 3.39544 3.52743 4.14572 4.25395 4.26973 4.39935 4.46843 4.54794 4.64908 4.71541 4.77183 4.85808 4.94067 5.00808 5.08462 5.12231 5.23626 5.35216 5.36142 5.37071 5.38839 5.45868 5.47761 5.56019 5.67054 5.70026 5.75476 5.81149 5.87813 5.93063 5.97104 6.06444 6.20899 6.24946 6.28400 6.34930 6.49301 6.50768 6.54682 6.73027 6.97308 7.50921 7.58629 7.69657 7.80368 7.90564 8.08839 8.43767 9.05113 9.61482 11.11819 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.029970 B = 0.001842 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.053699 B =15193.345622 C =15872.589472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.063 3.937 4 C 0.027 3.973 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.054 3.946 14 C -0.109 4.109 15 C -0.088 4.088 16 C -0.115 4.115 17 C 0.050 3.950 18 N -0.485 5.485 19 C 0.160 3.840 20 C -0.229 4.229 21 C 0.122 3.878 22 N -0.511 5.511 23 C 0.119 3.881 24 C -0.200 4.200 25 C 0.061 3.939 26 C -0.113 4.113 27 H 0.015 0.985 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.018 0.982 31 H 0.059 0.941 32 H 0.024 0.976 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.023 0.977 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.083 0.917 44 H 0.138 0.862 45 H 0.154 0.846 46 H 0.155 0.845 47 H 0.136 0.864 48 H 0.082 0.918 49 H 0.045 0.955 50 H 0.076 0.924 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.177 -22.797 17.206 28.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.064 4.064 4 C -0.010 4.010 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.074 4.074 14 C -0.147 4.147 15 C -0.108 4.108 16 C -0.153 4.153 17 C -0.076 4.076 18 N -0.199 5.199 19 C 0.053 3.947 20 C -0.252 4.252 21 C -0.034 4.034 22 N -0.222 5.222 23 C -0.037 4.037 24 C -0.222 4.222 25 C -0.064 4.064 26 C -0.151 4.151 27 H 0.034 0.966 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.156 0.844 45 H 0.171 0.829 46 H 0.172 0.828 47 H 0.153 0.847 48 H 0.101 0.899 49 H 0.063 0.937 50 H 0.095 0.905 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.729 -23.608 16.688 29.150 hybrid contribution -0.457 2.259 0.638 2.391 sum 3.272 -21.349 17.326 27.689 Atomic orbital electron populations 1.22410 0.88285 1.00870 1.00802 1.62085 1.07505 1.15931 1.41204 1.22335 0.98423 0.85299 1.00323 1.19099 0.96891 0.94006 0.90989 1.21160 1.35230 0.97862 1.01934 0.92903 1.24993 0.95299 0.98448 0.95570 1.69965 1.40722 1.36492 1.06022 0.86658 0.79445 0.84689 0.77181 1.20236 1.21260 1.20331 1.22141 0.99997 0.93313 0.91953 1.21615 1.00802 0.94457 0.97795 1.21218 0.95254 0.94979 0.99304 1.21747 0.95327 0.99622 0.98591 1.22365 1.00666 0.85827 0.98785 1.58725 1.08166 1.09278 1.43735 1.19320 0.94246 0.93107 0.88037 1.22310 1.03441 1.02031 0.97403 1.22601 0.96187 0.88760 0.95891 1.67727 1.14914 1.14157 1.25391 1.22608 0.91194 1.00022 0.89912 1.21808 1.05222 0.92759 1.02443 1.22266 0.83756 1.01554 0.98809 1.21696 1.00099 0.94774 0.98556 0.96643 0.90407 0.92444 0.96398 0.92263 0.95735 0.96464 0.92952 0.95918 0.91160 0.90901 0.91921 0.91519 0.90373 0.90496 0.93385 0.89827 0.84442 0.82872 0.82753 0.84665 0.89939 0.93656 0.90542 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.13 60.07 0.55 0.96 16 2 N -0.54 -9.78 4.76 -242.92 -1.16 -10.93 16 3 C 0.06 1.34 4.90 -3.82 -0.02 1.32 16 4 C 0.03 0.72 4.90 -27.88 -0.14 0.58 16 5 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 6 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.05 0.76 4.72 -3.83 -0.02 0.74 16 14 C -0.11 -1.21 4.61 -26.74 -0.12 -1.34 16 15 C -0.09 -0.78 2.25 -90.51 -0.20 -0.98 16 16 C -0.12 -1.00 5.07 -26.66 -0.14 -1.14 16 17 C 0.05 0.39 4.17 -3.84 -0.02 0.38 16 18 N -0.48 -4.07 4.70 -170.95 -0.80 -4.87 16 19 C 0.16 1.39 5.65 -83.61 -0.47 0.91 16 20 C -0.23 -1.85 8.88 -39.25 -0.35 -2.20 16 21 C 0.12 1.02 11.17 -17.61 -0.20 0.82 16 22 N -0.51 -4.97 10.36 -13.35 -0.14 -5.11 16 23 C 0.12 0.96 11.17 -17.61 -0.20 0.76 16 24 C -0.20 -1.57 9.25 -39.24 -0.36 -1.94 16 25 C 0.06 0.45 5.26 -3.83 -0.02 0.43 16 26 C -0.11 -0.87 5.38 -26.65 -0.14 -1.01 16 27 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 1.46 6.30 -51.93 -0.33 1.14 16 29 H 0.06 0.81 6.47 -51.93 -0.34 0.47 16 30 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 31 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 32 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.02 0.47 6.47 -51.93 -0.34 0.14 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 36 H 0.07 0.96 6.43 -51.93 -0.33 0.63 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.70 6.55 -51.93 -0.34 0.36 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.69 6.71 -51.93 -0.35 0.34 16 41 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 42 H 0.05 0.36 7.78 -51.93 -0.40 -0.04 16 43 H 0.08 0.63 7.01 -51.93 -0.36 0.26 16 44 H 0.14 0.91 5.96 -52.48 -0.31 0.59 16 45 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 46 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 47 H 0.14 0.85 7.24 -52.49 -0.38 0.47 16 48 H 0.08 0.53 6.78 -51.93 -0.35 0.18 16 49 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 50 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 51 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 390.23 15.07 5.88 5.88 Total: -1.00 -31.66 390.23 -11.62 -43.27 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -8.86 Total: -3.41 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -2.26 Total: -15.31 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -1.36 Total: -47.08 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.66 -11.62 -43.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092820973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.759 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds