Wall clock time and date at job start Tue Mar 31 2020 11:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 110.99551 * 2 1 4 4 C 1.53002 * 109.47376 * 293.95391 * 3 2 1 5 5 C 1.50697 * 109.47387 * 180.02562 * 4 3 2 6 6 H 1.08001 * 119.99963 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00153 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99755 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00103 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47146 * 59.99639 * 9 7 5 11 11 H 1.48497 * 109.47156 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47331 * 299.99778 * 9 7 5 13 13 C 1.46896 * 111.00183 * 123.95252 * 2 1 3 14 14 C 1.52999 * 109.47119 * 66.04838 * 13 2 1 15 15 C 1.52993 * 109.47320 * 180.02562 * 14 13 2 16 16 C 1.53099 * 109.52781 * 294.67694 * 15 14 13 17 17 C 1.53034 * 109.29509 * 182.43453 * 16 15 14 18 18 N 1.46847 * 109.51345 * 59.18740 * 17 16 15 19 19 C 1.39170 * 110.99853 * 174.16987 * 18 17 16 20 20 C 1.39468 * 120.86749 * 359.71542 * 19 18 17 21 21 C 1.37895 * 119.06929 * 179.73383 * 20 19 18 22 22 N 1.31995 * 120.83820 * 0.55315 * 21 20 19 23 23 C 1.31991 * 121.91440 * 359.72111 * 22 21 20 24 24 C 1.37897 * 120.84247 * 359.97438 * 23 22 21 25 25 C 1.46854 * 111.19790 * 298.26320 * 18 17 16 26 26 C 1.53039 * 109.52227 * 61.74204 * 25 18 17 27 27 H 1.08998 * 109.47028 * 296.04112 * 1 2 3 28 28 H 1.09000 * 109.47423 * 56.04701 * 1 2 3 29 29 H 1.09003 * 109.46600 * 176.04797 * 1 2 3 30 30 H 1.08996 * 109.47471 * 53.95451 * 3 2 1 31 31 H 1.09000 * 109.47281 * 173.95710 * 3 2 1 32 32 H 1.09006 * 109.46964 * 300.00422 * 4 3 2 33 33 H 1.08999 * 109.47390 * 59.99864 * 4 3 2 34 34 H 0.97007 * 119.99594 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47147 * 306.04879 * 13 2 1 36 36 H 1.09003 * 109.47326 * 186.04492 * 13 2 1 37 37 H 1.09004 * 109.47103 * 59.99969 * 14 13 2 38 38 H 1.09001 * 109.47454 * 300.00195 * 14 13 2 39 39 H 1.09002 * 109.52267 * 54.87293 * 15 14 13 40 40 H 1.09007 * 109.48839 * 62.49095 * 16 15 14 41 41 H 1.09009 * 109.50682 * 302.38881 * 16 15 14 42 42 H 1.09002 * 109.46271 * 299.17460 * 17 16 15 43 43 H 1.08994 * 109.46242 * 179.19760 * 17 16 15 44 44 H 1.08005 * 120.46743 * 359.97438 * 20 19 18 45 45 H 1.07997 * 119.57949 * 180.29794 * 21 20 19 46 46 H 1.08000 * 119.58219 * 180.02562 * 23 22 21 47 47 H 1.07993 * 120.47066 * 179.97438 * 24 23 22 48 48 H 1.08993 * 109.46229 * 181.76227 * 25 18 17 49 49 H 1.09008 * 109.45803 * 301.73838 * 25 18 17 50 50 H 1.08994 * 109.50227 * 60.75933 * 26 25 18 51 51 H 1.08998 * 109.50241 * 180.83988 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1718 3.4642 -1.3185 6 1 2.7198 3.8323 -0.4637 7 6 1.9659 4.2817 -2.4095 8 7 1.2982 3.8336 -3.4502 9 14 2.6352 6.0256 -2.4096 10 1 4.1126 5.9888 -2.2625 11 1 2.2820 6.6914 -3.6891 12 1 2.0438 6.7829 -1.2773 13 6 1.9955 -0.7659 1.1376 14 6 1.6316 -2.2426 0.9703 15 6 2.1794 -3.0402 2.1554 16 6 3.7097 -3.0032 2.1336 17 6 4.2525 -3.8524 3.2852 18 7 3.7767 -5.2342 3.1424 19 6 4.3566 -6.0627 4.0985 20 6 5.2663 -5.5568 5.0267 21 6 5.8143 -6.4099 5.9613 22 7 5.4961 -7.6908 5.9771 23 6 4.6439 -8.2087 5.1124 24 6 4.0472 -7.4218 4.1499 25 6 2.3111 -5.3006 3.2079 26 6 1.7106 -4.4944 2.0540 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 1.5610 1.9274 0.8309 31 1 3.0797 1.3445 0.1082 32 1 2.0657 1.5015 -2.1492 33 1 0.5471 2.0845 -1.4266 34 1 1.1536 4.4086 -4.2180 35 1 1.5612 -0.3872 2.0627 36 1 3.0798 -0.6611 1.1756 37 1 2.0660 -2.6213 0.0451 38 1 0.5473 -2.3476 0.9323 39 1 1.8167 -2.6046 3.0865 40 1 4.0503 -1.9741 2.2483 41 1 4.0701 -3.4027 1.1856 42 1 3.9032 -3.4441 4.2336 43 1 5.3422 -3.8395 3.2637 44 1 5.5348 -4.5107 5.0162 45 1 6.5159 -6.0258 6.6870 46 1 4.4103 -9.2621 5.1598 47 1 3.3512 -7.8520 3.4451 48 1 1.9908 -6.3395 3.1305 49 1 1.9708 -4.8853 4.1566 50 1 2.0394 -4.9174 1.1048 51 1 0.6227 -4.5315 2.1116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092820973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:38 Heat of formation + Delta-G solvation = 10.453440 kcal Electronic energy + Delta-G solvation = -25889.369306 eV Core-core repulsion = 22401.028726 eV Total energy + Delta-G solvation = -3488.340579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.71742 -39.91480 -38.74721 -36.33832 -35.08268 -32.75063 -32.63222 -31.52429 -31.33604 -29.47168 -27.80218 -26.40153 -25.30595 -24.61131 -23.27398 -22.90491 -21.84858 -21.40569 -20.68278 -18.78184 -18.57491 -17.31283 -16.70298 -16.61744 -16.51177 -16.34789 -15.97856 -15.69204 -15.39681 -15.21098 -15.13591 -14.73936 -14.59705 -14.37142 -14.30895 -14.21014 -13.68535 -13.65586 -13.21258 -12.97023 -12.87702 -12.76273 -12.57599 -12.56079 -12.34034 -12.20036 -11.84857 -11.82628 -11.69981 -11.49877 -11.30413 -11.25631 -11.06074 -10.93944 -10.53257 -10.43658 -10.10768 -9.19325 -9.15748 -8.19741 -6.31220 0.23335 0.32224 1.39988 1.43224 1.51185 2.40293 2.56342 2.93043 3.10608 3.13388 3.63484 3.65682 3.75362 3.82995 3.91062 4.07797 4.15712 4.19836 4.27841 4.31023 4.35071 4.39162 4.42897 4.47359 4.52786 4.59704 4.65090 4.70509 4.75607 4.76849 4.79638 4.84287 4.87754 4.93250 4.97709 5.03963 5.09891 5.12247 5.13268 5.20451 5.28214 5.35896 5.46449 5.55022 5.66781 5.67598 5.79293 5.91803 6.10836 6.13595 6.33878 6.36438 6.85836 7.10872 7.37694 8.92070 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.029970 B = 0.001842 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.053699 B =15193.345622 C =15872.589472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.558 5.558 3 C 0.079 3.921 4 C 0.035 3.965 5 C -0.546 4.546 6 H 0.060 0.940 7 C 0.001 3.999 8 N -0.931 5.931 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.056 3.944 14 C -0.099 4.099 15 C -0.081 4.081 16 C -0.113 4.113 17 C 0.053 3.947 18 N -0.492 5.492 19 C 0.147 3.853 20 C -0.234 4.234 21 C 0.112 3.888 22 N -0.538 5.538 23 C 0.111 3.889 24 C -0.203 4.203 25 C 0.063 3.937 26 C -0.108 4.108 27 H 0.023 0.977 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.018 0.982 31 H 0.062 0.938 32 H -0.009 1.009 33 H -0.005 1.005 34 H 0.264 0.736 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.086 0.914 44 H 0.150 0.850 45 H 0.172 0.828 46 H 0.176 0.824 47 H 0.150 0.850 48 H 0.093 0.907 49 H 0.046 0.954 50 H 0.069 0.931 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.453 -23.092 18.690 29.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.282 5.282 3 C -0.048 4.048 4 C -0.003 4.003 5 C -0.585 4.585 6 H 0.078 0.922 7 C -0.197 4.197 8 N -0.571 5.571 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.192 1.192 13 C -0.072 4.072 14 C -0.137 4.137 15 C -0.100 4.100 16 C -0.151 4.151 17 C -0.073 4.073 18 N -0.207 5.207 19 C 0.040 3.960 20 C -0.257 4.257 21 C -0.044 4.044 22 N -0.249 5.249 23 C -0.045 4.045 24 C -0.225 4.225 25 C -0.062 4.062 26 C -0.146 4.146 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.009 0.991 33 H 0.013 0.987 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.167 0.833 45 H 0.189 0.811 46 H 0.193 0.807 47 H 0.167 0.833 48 H 0.111 0.889 49 H 0.065 0.935 50 H 0.087 0.913 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.006 -23.920 18.190 30.317 hybrid contribution -0.561 2.288 0.160 2.361 sum 3.445 -21.632 18.350 28.575 Atomic orbital electron populations 1.22375 0.87558 1.02229 0.99822 1.62009 1.08333 1.14136 1.43745 1.21965 0.98609 0.87003 0.97257 1.18938 0.95062 0.93676 0.92601 1.21607 1.35462 0.99034 1.02385 0.92212 1.25972 0.95417 1.03281 0.95041 1.70108 1.41891 1.38313 1.06752 0.85484 0.79096 0.78814 0.77532 1.19136 1.20801 1.19173 1.22229 1.00016 0.94320 0.90598 1.21521 1.01072 0.92661 0.98416 1.21142 0.95149 0.95439 0.98263 1.21699 0.95324 0.99619 0.98423 1.22325 1.00825 0.85629 0.98550 1.58754 1.08723 1.09356 1.43826 1.19513 0.94606 0.93560 0.88299 1.22473 1.03300 1.02658 0.97250 1.22953 0.96493 0.88557 0.96394 1.67750 1.15876 1.14944 1.26371 1.23002 0.90762 1.01147 0.89586 1.21992 1.05365 0.92568 1.02597 1.22286 0.83192 1.02165 0.98561 1.21646 1.00811 0.93752 0.98394 0.95827 0.93437 0.89560 0.96387 0.91996 0.99054 0.98664 0.92771 0.95142 0.90987 0.92028 0.91462 0.90960 0.90592 0.91671 0.92766 0.89593 0.83279 0.81084 0.80663 0.83250 0.88865 0.93534 0.91260 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.13 127.69 1.17 2.10 16 2 N -0.56 -19.93 4.76 -922.46 -4.39 -24.32 16 3 C 0.08 3.39 4.90 86.30 0.42 3.81 16 4 C 0.03 1.88 4.90 29.85 0.15 2.02 16 5 C -0.55 -31.50 9.11 25.60 0.23 -31.26 16 6 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 7 C 0.00 0.05 5.46 84.65 0.46 0.52 16 8 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 9 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 13 C 0.06 1.48 4.72 86.30 0.41 1.89 16 14 C -0.10 -2.04 4.61 30.59 0.14 -1.90 16 15 C -0.08 -1.26 2.25 -10.72 -0.02 -1.29 16 16 C -0.11 -1.81 5.07 30.64 0.16 -1.65 16 17 C 0.05 0.75 4.17 86.32 0.36 1.11 16 18 N -0.49 -7.44 4.70 -694.76 -3.26 -10.70 16 19 C 0.15 2.33 5.65 38.57 0.22 2.55 16 20 C -0.23 -3.48 8.88 22.49 0.20 -3.28 16 21 C 0.11 1.75 11.17 84.59 0.95 2.70 16 22 N -0.54 -9.97 10.36 -196.16 -2.03 -12.00 16 23 C 0.11 1.65 11.17 84.59 0.95 2.59 16 24 C -0.20 -2.89 9.25 22.49 0.21 -2.68 16 25 C 0.06 0.79 5.26 86.32 0.45 1.24 16 26 C -0.11 -1.43 5.38 30.65 0.16 -1.26 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 1.84 6.30 -2.39 -0.02 1.83 16 29 H 0.09 2.31 6.47 -2.39 -0.02 2.30 16 30 H 0.02 0.76 8.12 -2.39 -0.02 0.74 16 31 H 0.06 2.58 7.93 -2.39 -0.02 2.56 16 32 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 33 H 0.00 -0.29 6.47 -2.39 -0.02 -0.30 16 34 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 35 H 0.03 0.78 8.12 -2.39 -0.02 0.76 16 36 H 0.07 1.89 6.43 -2.39 -0.02 1.87 16 37 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.07 1.34 6.55 -2.39 -0.02 1.32 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.24 6.71 -2.38 -0.02 1.23 16 41 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.05 0.71 7.78 -2.39 -0.02 0.69 16 43 H 0.09 1.17 7.01 -2.39 -0.02 1.15 16 44 H 0.15 1.74 5.96 -2.91 -0.02 1.72 16 45 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 46 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.15 1.59 7.24 -2.91 -0.02 1.57 16 48 H 0.09 0.97 6.78 -2.39 -0.02 0.96 16 49 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 50 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -68.64 390.23 0.11 -68.53 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.88 Total: 11.81 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 6.60 Total: -22.80 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -9.41 Total: -103.95 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.64 0.11 -68.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092820973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.982 kcal (2) G-P(sol) polarization free energy of solvation -68.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds