Wall clock time and date at job start Tue Mar 31 2020 12:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00603 * 2 1 4 4 H 1.48499 * 109.47050 * 270.00139 * 3 2 1 5 5 H 1.48501 * 109.46784 * 30.00231 * 3 2 1 6 6 H 1.48497 * 109.47268 * 149.99681 * 3 2 1 7 7 C 1.37887 * 119.99521 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00017 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99665 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46779 * 179.97438 * 9 7 2 11 11 S 1.81402 * 109.46784 * 179.97438 * 10 9 7 12 12 O 1.42103 * 110.53999 * 68.38081 * 11 10 9 13 13 O 1.42101 * 110.54546 * 291.62514 * 11 10 9 14 14 O 1.52202 * 104.44915 * 179.97438 * 11 10 9 15 15 C 1.35617 * 113.99884 * 75.00166 * 14 11 10 16 16 C 1.38683 * 120.15889 * 270.32273 * 15 14 11 17 17 C 1.38044 * 120.12889 * 180.25695 * 16 15 14 18 18 C 1.38729 * 120.44031 * 359.43711 * 17 16 15 19 19 Cl 1.73594 * 119.84369 * 180.27971 * 18 17 16 20 20 C 1.37783 * 120.30972 * 0.26226 * 18 17 16 21 21 C 1.40016 * 119.86765 * 0.02562 * 20 18 17 22 22 C 1.46790 * 120.21932 * 180.02562 * 21 20 18 23 23 O 1.21293 * 120.00393 * 179.97438 * 22 21 20 24 24 H 0.97001 * 119.99856 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47476 * 59.99674 * 9 7 2 26 26 H 1.09004 * 109.47003 * 299.99920 * 9 7 2 27 27 H 1.08998 * 109.46915 * 60.00542 * 10 9 7 28 28 H 1.08998 * 109.46977 * 299.99922 * 10 9 7 29 29 H 1.08008 * 119.93662 * 359.97265 * 16 15 14 30 30 H 1.08002 * 119.78410 * 179.72497 * 17 16 15 31 31 H 1.07998 * 120.06599 * 179.97438 * 20 18 17 32 32 H 1.08007 * 119.99424 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0213 -2.6368 -0.0001 11 16 5.8353 -2.6369 -0.0001 12 8 6.3340 -2.1467 1.2370 13 8 6.3340 -2.1464 -1.2371 14 8 6.2151 -4.1107 0.0004 15 6 6.0422 -4.7253 -1.1961 16 6 4.8295 -5.3241 -1.5030 17 6 4.6559 -5.9541 -2.7190 18 6 5.6856 -5.9845 -3.6482 19 17 5.4480 -6.7748 -5.1754 20 6 6.8958 -5.3901 -3.3646 21 6 7.0880 -4.7527 -2.1329 22 6 8.3740 -4.1164 -1.8230 23 8 8.5361 -3.5649 -0.7549 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6810 0.8904 26 1 3.8751 -0.6798 -0.8895 27 1 3.6584 -3.1503 -0.8904 28 1 3.6576 -3.1508 0.8896 29 1 4.0208 -5.3015 -0.7874 30 1 3.7107 -6.4225 -2.9504 31 1 7.6949 -5.4164 -4.0907 32 1 9.1760 -4.1393 -2.5461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111324776.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:57 Heat of formation + Delta-G solvation = -114.666939 kcal Electronic energy + Delta-G solvation = -22399.143455 eV Core-core repulsion = 18672.353479 eV Total energy + Delta-G solvation = -3726.789976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.021 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.53951 -38.86415 -38.47803 -36.88475 -36.71111 -35.74930 -34.07365 -32.21824 -31.56306 -30.52251 -26.19660 -25.49207 -23.79673 -22.15065 -21.49412 -20.17348 -18.39757 -18.07383 -17.43074 -17.23569 -16.87753 -15.95877 -15.67187 -15.22203 -14.91676 -14.57457 -14.52608 -14.27330 -13.81019 -13.67936 -13.42767 -13.06196 -12.85090 -12.57565 -12.03933 -11.93089 -11.84825 -11.81710 -11.59918 -11.48915 -11.32341 -11.29586 -10.51592 -10.20615 -10.08628 -9.73686 -9.67591 -9.44938 -9.11737 -8.70839 -6.21403 -4.23252 -0.17092 0.29924 0.77203 1.56859 2.04499 2.25595 3.05329 3.23606 3.31330 3.35866 3.72572 3.93490 4.05211 4.23081 4.32028 4.41078 4.50371 4.63122 4.95607 5.00711 5.10047 5.25391 5.33100 5.34126 5.49983 5.59909 5.68178 6.12548 6.16884 6.71501 6.85320 7.12771 7.48125 8.30610 8.78478 9.38006 10.90780 Molecular weight = 318.02amu Principal moments of inertia in cm(-1) A = 0.014694 B = 0.004610 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.094466 B = 6072.352539 C = 7307.220358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.868 3.132 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.521 4.521 8 H 0.079 0.921 9 C -0.004 4.004 10 C -0.612 4.612 11 S 2.577 3.423 12 O -0.924 6.924 13 O -0.957 6.957 14 O -0.659 6.659 15 C 0.140 3.860 16 C -0.131 4.131 17 C -0.058 4.058 18 C -0.042 4.042 19 Cl -0.052 7.052 20 C -0.047 4.047 21 C -0.158 4.158 22 C 0.385 3.615 23 O -0.438 6.438 24 H 0.267 0.733 25 H 0.035 0.965 26 H 0.030 0.970 27 H 0.127 0.873 28 H 0.133 0.867 29 H 0.161 0.839 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.046 -15.529 -9.674 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.694 3.306 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.560 4.560 8 H 0.097 0.903 9 C -0.043 4.043 10 C -0.742 4.742 11 S 2.676 3.324 12 O -0.923 6.923 13 O -0.955 6.955 14 O -0.616 6.616 15 C 0.096 3.904 16 C -0.151 4.151 17 C -0.076 4.076 18 C -0.070 4.070 19 Cl -0.023 7.023 20 C -0.065 4.065 21 C -0.162 4.162 22 C 0.242 3.758 23 O -0.309 6.309 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.145 0.855 28 H 0.151 0.849 29 H 0.179 0.821 30 H 0.173 0.827 31 H 0.175 0.825 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.751 -15.040 -9.003 22.278 hybrid contribution -0.541 0.712 -0.106 0.900 sum 13.210 -14.328 -9.109 21.512 Atomic orbital electron populations 1.69871 1.06194 1.27348 1.49738 1.24965 0.94820 0.99150 0.94014 0.86948 0.80788 0.83704 0.79203 1.19593 1.20622 1.18564 1.20810 0.87573 0.94979 1.52641 0.90329 1.19394 1.00074 0.86690 0.98102 1.30684 1.21926 1.10355 1.11229 1.06096 0.78797 0.72576 0.74901 1.93589 1.78513 1.75294 1.44854 1.93560 1.78233 1.77849 1.45903 1.85742 1.87567 1.49240 1.39027 1.18307 0.94193 0.96652 0.81200 1.21506 0.96623 0.98562 0.98423 1.21191 0.98958 0.96410 0.91088 1.20926 0.95766 1.00765 0.89513 1.98405 1.96998 1.78465 1.28406 1.21184 0.96592 0.93713 0.95056 1.21181 0.97794 1.02729 0.94448 1.23865 0.88204 0.74850 0.88906 1.90567 1.82421 1.32193 1.25714 0.92296 0.94726 0.95169 0.85498 0.84855 0.82127 0.82666 0.82536 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.31 9.66 -34.44 -0.33 -14.64 16 8 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 9 C 0.00 -0.09 4.05 -27.88 -0.11 -0.20 16 10 C -0.61 -11.33 5.39 37.16 0.20 -11.13 16 11 S 2.58 49.01 4.42 -107.50 -0.48 48.54 16 12 O -0.92 -20.65 18.09 -67.04 -1.21 -21.86 16 13 O -0.96 -19.00 14.73 -69.87 -1.03 -20.03 16 14 O -0.66 -10.79 8.56 -53.99 -0.46 -11.25 16 15 C 0.14 1.89 4.82 -38.59 -0.19 1.71 16 16 C -0.13 -1.39 8.44 -39.49 -0.33 -1.73 16 17 C -0.06 -0.50 9.81 -39.47 -0.39 -0.88 16 18 C -0.04 -0.36 6.31 -39.57 -0.25 -0.61 16 19 Cl -0.05 -0.39 28.94 -51.86 -1.50 -1.89 16 20 C -0.05 -0.38 9.57 -39.08 -0.37 -0.76 16 21 C -0.16 -1.84 5.31 -104.95 -0.56 -2.39 16 22 C 0.39 4.56 10.73 34.19 0.37 4.93 16 23 O -0.44 -7.40 14.38 -24.22 -0.35 -7.74 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.03 0.82 7.20 -51.93 -0.37 0.45 16 26 H 0.03 0.70 7.57 -51.93 -0.39 0.30 16 27 H 0.13 2.03 6.58 -51.92 -0.34 1.68 16 28 H 0.13 2.21 8.14 -51.93 -0.42 1.79 16 29 H 0.16 1.42 7.46 -52.48 -0.39 1.02 16 30 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 LS Contribution 308.27 15.07 4.65 4.65 Total: -1.00 -36.38 308.27 -9.12 -45.50 By element: Atomic # 1 Polarization: -0.20 SS G_CDS: -2.78 Total: -2.98 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -2.06 Total: -23.71 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.77 Total: -25.85 kcal Atomic # 8 Polarization: -57.83 SS G_CDS: -3.05 Total: -60.88 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: 49.01 SS G_CDS: -0.48 Total: 48.54 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.50 Total: -1.89 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.38 -9.12 -45.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324776.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.164 kcal (2) G-P(sol) polarization free energy of solvation -36.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds