Wall clock time and date at job start Tue Mar 31 2020 12:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00603 * 2 1 4 4 H 1.48499 * 109.47050 * 270.00139 * 3 2 1 5 5 H 1.48501 * 109.46784 * 30.00231 * 3 2 1 6 6 H 1.48497 * 109.47268 * 149.99681 * 3 2 1 7 7 C 1.37887 * 119.99521 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00017 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99665 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46779 * 179.97438 * 9 7 2 11 11 S 1.81402 * 109.46784 * 179.97438 * 10 9 7 12 12 O 1.42103 * 110.53999 * 68.38081 * 11 10 9 13 13 O 1.42101 * 110.54546 * 291.62514 * 11 10 9 14 14 O 1.52202 * 104.44915 * 179.97438 * 11 10 9 15 15 C 1.35617 * 113.99884 * 75.00166 * 14 11 10 16 16 C 1.38683 * 120.15889 * 270.32273 * 15 14 11 17 17 C 1.38044 * 120.12889 * 180.25695 * 16 15 14 18 18 C 1.38729 * 120.44031 * 359.43711 * 17 16 15 19 19 Cl 1.73594 * 119.84369 * 180.27971 * 18 17 16 20 20 C 1.37783 * 120.30972 * 0.26226 * 18 17 16 21 21 C 1.40016 * 119.86765 * 0.02562 * 20 18 17 22 22 C 1.46790 * 120.21932 * 180.02562 * 21 20 18 23 23 O 1.21293 * 120.00393 * 179.97438 * 22 21 20 24 24 H 0.97001 * 119.99856 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47476 * 59.99674 * 9 7 2 26 26 H 1.09004 * 109.47003 * 299.99920 * 9 7 2 27 27 H 1.08998 * 109.46915 * 60.00542 * 10 9 7 28 28 H 1.08998 * 109.46977 * 299.99922 * 10 9 7 29 29 H 1.08008 * 119.93662 * 359.97265 * 16 15 14 30 30 H 1.08002 * 119.78410 * 179.72497 * 17 16 15 31 31 H 1.07998 * 120.06599 * 179.97438 * 20 18 17 32 32 H 1.08007 * 119.99424 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0213 -2.6368 -0.0001 11 16 5.8353 -2.6369 -0.0001 12 8 6.3340 -2.1467 1.2370 13 8 6.3340 -2.1464 -1.2371 14 8 6.2151 -4.1107 0.0004 15 6 6.0422 -4.7253 -1.1961 16 6 4.8295 -5.3241 -1.5030 17 6 4.6559 -5.9541 -2.7190 18 6 5.6856 -5.9845 -3.6482 19 17 5.4480 -6.7748 -5.1754 20 6 6.8958 -5.3901 -3.3646 21 6 7.0880 -4.7527 -2.1329 22 6 8.3740 -4.1164 -1.8230 23 8 8.5361 -3.5649 -0.7549 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6810 0.8904 26 1 3.8751 -0.6798 -0.8895 27 1 3.6584 -3.1503 -0.8904 28 1 3.6576 -3.1508 0.8896 29 1 4.0208 -5.3015 -0.7874 30 1 3.7107 -6.4225 -2.9504 31 1 7.6949 -5.4164 -4.0907 32 1 9.1760 -4.1393 -2.5461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111324776.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:57 Heat of formation + Delta-G solvation = -139.754643 kcal Electronic energy + Delta-G solvation = -22400.231339 eV Core-core repulsion = 18672.353479 eV Total energy + Delta-G solvation = -3727.877860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.021 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.55606 -39.90004 -39.31571 -38.40130 -37.42510 -37.26625 -35.98554 -33.61482 -32.92008 -31.34951 -28.07194 -26.33835 -24.74856 -23.23617 -23.07753 -21.31616 -19.81227 -19.31710 -18.74807 -18.55480 -18.03574 -17.22333 -16.74954 -16.46009 -16.30595 -15.90076 -15.52600 -15.38608 -15.24399 -14.85892 -14.55384 -14.43997 -14.02255 -13.86653 -13.68817 -13.41718 -13.34926 -13.14147 -13.06944 -12.76921 -12.46781 -12.29375 -12.11657 -12.01297 -11.73769 -11.31156 -10.98553 -10.85624 -10.42276 -9.95131 -8.37997 -6.43772 -1.29892 -0.60242 -0.19989 0.86407 1.03296 1.24101 1.30516 1.33661 1.42994 2.26592 2.28245 2.51876 2.84096 2.95938 2.99580 3.36028 3.52389 3.74557 3.77642 3.83835 3.95259 4.21738 4.27216 4.46774 4.61795 4.73894 4.82414 4.89153 4.95321 4.98844 5.31893 5.42741 6.14307 6.29855 6.61574 7.20702 8.77103 Molecular weight = 318.02amu Principal moments of inertia in cm(-1) A = 0.014694 B = 0.004610 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.094466 B = 6072.352539 C = 7307.220358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.019 3.981 3 Si 0.918 3.082 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.526 4.526 8 H 0.056 0.944 9 C -0.014 4.014 10 C -0.610 4.610 11 S 2.598 3.402 12 O -0.969 6.969 13 O -0.970 6.970 14 O -0.657 6.657 15 C 0.090 3.910 16 C -0.136 4.136 17 C -0.053 4.053 18 C -0.041 4.041 19 Cl -0.036 7.036 20 C -0.029 4.029 21 C -0.177 4.177 22 C 0.383 3.617 23 O -0.498 6.498 24 H 0.271 0.729 25 H 0.030 0.970 26 H 0.036 0.964 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.172 0.828 30 H 0.182 0.818 31 H 0.198 0.802 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.108 -16.619 -11.942 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.180 4.180 3 Si 0.741 3.259 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.053 4.053 10 C -0.739 4.739 11 S 2.698 3.302 12 O -0.967 6.967 13 O -0.968 6.968 14 O -0.615 6.615 15 C 0.047 3.953 16 C -0.157 4.157 17 C -0.071 4.071 18 C -0.069 4.069 19 Cl -0.007 7.007 20 C -0.047 4.047 21 C -0.180 4.180 22 C 0.244 3.756 23 O -0.373 6.373 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.170 0.830 28 H 0.167 0.833 29 H 0.190 0.810 30 H 0.199 0.801 31 H 0.215 0.785 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 14.814 -16.136 -11.288 24.642 hybrid contribution -0.908 0.792 0.412 1.274 sum 13.906 -15.343 -10.875 23.389 Atomic orbital electron populations 1.69984 1.07723 1.28417 1.51403 1.25778 0.95572 1.02708 0.93934 0.86123 0.79886 0.79843 0.80033 1.18207 1.19819 1.17780 1.21101 0.89644 0.94164 1.51592 0.92541 1.19358 0.97734 0.90055 0.98104 1.30601 1.22224 1.07702 1.13390 1.05356 0.78268 0.72879 0.73728 1.93524 1.79281 1.77220 1.46685 1.93513 1.78390 1.78786 1.46118 1.85692 1.87311 1.47769 1.40741 1.18946 0.96423 0.98798 0.81093 1.21730 0.96054 0.98393 0.99486 1.21534 1.00145 0.95332 0.90110 1.21127 0.95780 1.00032 0.89926 1.98423 1.96938 1.78042 1.27316 1.21578 0.97534 0.91471 0.94146 1.21470 0.97610 1.03632 0.95316 1.24925 0.89432 0.72593 0.88686 1.90559 1.83381 1.34984 1.28355 0.92029 0.95188 0.94562 0.83022 0.83287 0.81015 0.80084 0.78495 0.80337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.42 13.96 21.45 0.30 -56.12 16 2 C 0.02 1.10 5.47 84.66 0.46 1.56 16 3 Si 0.92 43.41 27.47 68.60 1.88 45.29 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 7 C -0.53 -29.08 9.66 25.60 0.25 -28.83 16 8 H 0.06 3.28 7.99 -2.91 -0.02 3.25 16 9 C -0.01 -0.64 4.05 29.85 0.12 -0.52 16 10 C -0.61 -22.30 5.39 71.98 0.39 -21.91 16 11 S 2.60 99.25 4.42 -56.49 -0.25 99.00 16 12 O -0.97 -44.41 18.09 -118.57 -2.15 -46.56 16 13 O -0.97 -38.27 14.73 -115.86 -1.71 -39.98 16 14 O -0.66 -21.64 8.56 -55.40 -0.47 -22.11 16 15 C 0.09 2.34 4.82 22.91 0.11 2.45 16 16 C -0.14 -2.67 8.44 22.33 0.19 -2.48 16 17 C -0.05 -0.76 9.81 22.34 0.22 -0.54 16 18 C -0.04 -0.55 6.31 22.28 0.14 -0.41 16 19 Cl -0.04 -0.41 28.94 -2.72 -0.08 -0.49 16 20 C -0.03 -0.37 9.57 22.59 0.22 -0.15 16 21 C -0.18 -3.74 5.31 -20.08 -0.11 -3.85 16 22 C 0.38 8.39 10.73 70.06 0.75 9.14 16 23 O -0.50 -16.85 14.38 25.39 0.37 -16.48 16 24 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 25 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 26 H 0.04 1.65 7.57 -2.38 -0.02 1.63 16 27 H 0.15 4.68 6.58 -2.39 -0.02 4.67 16 28 H 0.15 4.90 8.14 -2.39 -0.02 4.88 16 29 H 0.17 2.78 7.46 -2.91 -0.02 2.76 16 30 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.20 0.78 8.06 -2.91 -0.02 0.75 16 32 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -81.46 308.27 1.74 -79.72 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.11 Total: 3.26 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 2.74 Total: -45.53 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.30 Total: -56.12 kcal Atomic # 8 Polarization: -121.17 SS G_CDS: -3.96 Total: -125.13 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal Atomic # 16 Polarization: 99.25 SS G_CDS: -0.25 Total: 99.00 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -81.46 1.74 -79.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324776.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.034 kcal (2) G-P(sol) polarization free energy of solvation -81.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds