Wall clock time and date at job start Tue Mar 31 2020 11:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 H 1.08999 * 109.47106 * 305.36570 * 3 2 1 5 5 C 1.50702 * 109.46889 * 185.37103 * 3 2 1 6 6 H 1.08004 * 119.99944 * 244.79662 * 5 3 2 7 7 C 1.37873 * 120.00187 * 64.79566 * 5 3 2 8 8 N 1.31515 * 119.99871 * 7.04842 * 7 5 3 9 9 Si 1.86803 * 120.00139 * 187.04386 * 7 5 3 10 10 H 1.48491 * 109.47003 * 84.99341 * 9 7 5 11 11 H 1.48504 * 109.47072 * 204.99537 * 9 7 5 12 12 H 1.48495 * 109.46926 * 324.99099 * 9 7 5 13 13 N 1.46500 * 109.47312 * 65.37188 * 3 2 1 14 14 C 1.34778 * 119.99915 * 274.99725 * 13 3 2 15 15 O 1.21621 * 119.99718 * 359.97438 * 14 13 3 16 16 C 1.47234 * 120.00056 * 179.97438 * 14 13 3 17 17 N 1.30591 * 125.53482 * 180.02562 * 16 14 13 18 18 C 1.30725 * 115.90302 * 179.97438 * 17 16 14 19 19 Br 1.89096 * 122.12281 * 179.97438 * 18 17 16 20 20 C 1.34314 * 115.75941 * 0.02562 * 18 17 16 21 21 S 1.71068 * 109.09458 * 359.74740 * 20 18 17 22 22 H 1.09002 * 109.46784 * 60.00411 * 1 2 3 23 23 H 1.08999 * 109.47328 * 300.00262 * 1 2 3 24 24 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47253 * 119.99337 * 2 1 3 26 26 H 1.08999 * 109.47328 * 239.99738 * 2 1 3 27 27 H 0.96998 * 120.00201 * 180.02562 * 8 7 5 28 28 H 0.96996 * 120.00012 * 95.00177 * 13 3 2 29 29 H 1.08005 * 125.45169 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5411 1.4446 -0.1330 6 1 4.1542 1.8171 0.6744 7 6 4.1317 0.9711 -1.2853 8 7 3.3878 0.6475 -2.3204 9 14 5.9887 0.7892 -1.3763 10 1 6.3863 -0.5217 -0.8032 11 1 6.4243 0.8624 -2.7941 12 1 6.6315 1.8825 -0.6039 13 7 1.6600 2.0948 1.2556 14 6 0.4434 2.6615 1.3793 15 8 -0.3388 2.6317 0.4485 16 6 0.0614 3.3165 2.6413 17 7 -1.0842 3.8968 2.8789 18 6 -1.2236 4.4198 4.0688 19 35 -2.8094 5.3025 4.5996 20 6 -0.1686 4.2914 4.8901 21 16 1.0724 3.4390 4.0778 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.8033 0.3140 -3.1310 28 1 2.2841 2.1189 1.9977 29 1 -0.1143 4.6626 5.9029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120288289.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:35 Heat of formation + Delta-G solvation = 7.726098 kcal Electronic energy + Delta-G solvation = -16438.362662 eV Core-core repulsion = 13534.745112 eV Total energy + Delta-G solvation = -2903.617550 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.13489 -38.77521 -35.19316 -32.61190 -32.08243 -31.16865 -29.73098 -27.51283 -25.97192 -23.19986 -21.67520 -19.77050 -19.64204 -18.89256 -17.25388 -16.02431 -15.65195 -15.39882 -15.04428 -14.39122 -14.25107 -13.65445 -13.35789 -12.76657 -12.27185 -11.95906 -11.59995 -11.41830 -11.09609 -11.07003 -10.86555 -10.61183 -10.46955 -10.33578 -10.21331 -9.94821 -9.76216 -9.34455 -9.20002 -8.93432 -8.58579 -8.08081 -6.21786 -4.29410 0.06152 0.71273 1.02974 1.78052 2.10927 3.21087 3.26915 3.28927 3.42387 3.54463 4.28170 4.62325 4.76877 5.08051 5.11718 5.38169 6.28765 6.32769 6.51796 6.91084 7.01210 7.12411 7.18440 7.25373 7.49282 7.60300 7.72238 7.95954 8.38800 8.61462 8.82965 9.36638 10.86052 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.032206 B = 0.003366 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.205187 B = 8315.569376 C = 8828.240221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.271 3.729 4 H 0.061 0.939 5 C -0.540 4.540 6 H 0.063 0.937 7 C 0.070 3.930 8 N -0.878 5.878 9 Si 0.901 3.099 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.692 5.692 14 C 0.576 3.424 15 O -0.498 6.498 16 C 0.028 3.972 17 N -0.392 5.392 18 C 0.056 3.944 19 Br 0.015 6.985 20 C -0.248 4.248 21 S 0.219 5.781 22 H 0.053 0.947 23 H 0.038 0.962 24 H 0.027 0.973 25 H 0.037 0.963 26 H 0.087 0.913 27 H 0.266 0.734 28 H 0.387 0.613 29 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.593 6.955 17.144 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.170 3.830 4 H 0.079 0.921 5 C -0.579 4.579 6 H 0.081 0.919 7 C -0.134 4.134 8 N -0.514 5.514 9 Si 0.728 3.272 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.342 5.342 14 C 0.355 3.645 15 O -0.373 6.373 16 C -0.251 4.251 17 N -0.108 5.108 18 C -0.161 4.161 19 Br 0.098 6.902 20 C -0.392 4.392 21 S 0.474 5.526 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.220 0.780 29 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.096 6.821 16.227 18.979 hybrid contribution 0.730 0.236 0.599 0.973 sum -6.366 7.057 16.826 19.324 Atomic orbital electron populations 1.21874 0.97959 0.98561 1.01508 1.21889 0.92991 0.99468 1.01745 1.18977 0.94907 0.89154 0.79971 0.92098 1.21123 0.90151 1.44150 1.02437 0.91879 1.24878 0.98649 0.94909 0.94975 1.69958 1.35568 1.42606 1.03317 0.86478 0.84699 0.78678 0.77369 1.20359 1.21094 1.19843 1.46437 1.13055 1.55438 1.19227 1.16689 0.83850 0.79883 0.84068 1.90856 1.50669 1.57937 1.37794 1.28252 0.92664 1.04504 0.99696 1.66477 1.19648 1.07826 1.16812 1.21680 0.96199 1.06411 0.91796 1.96754 1.29589 1.75214 1.88685 1.26619 0.97661 1.08024 1.06912 1.84049 1.16814 1.45869 1.05887 0.92765 0.94250 0.95402 0.94468 0.89470 0.92370 0.77992 0.79117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.73 15 2 C -0.12 -2.79 5.49 -26.73 -0.15 -2.94 15 3 C 0.27 6.46 2.11 -69.08 -0.15 6.32 15 4 H 0.06 1.70 7.55 -51.93 -0.39 1.31 15 5 C -0.54 -13.52 8.67 -34.44 -0.30 -13.82 15 6 H 0.06 1.49 7.73 -52.48 -0.41 1.09 15 7 C 0.07 1.81 5.19 -17.82 -0.09 1.72 15 8 N -0.88 -23.88 12.00 55.43 0.66 -23.22 15 9 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 15 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 15 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 13 N -0.69 -13.68 5.02 -56.07 -0.28 -13.96 15 14 C 0.58 11.56 6.39 -12.61 -0.08 11.48 15 15 O -0.50 -11.85 14.21 5.26 0.07 -11.77 15 16 C 0.03 0.47 7.46 -14.43 -0.11 0.37 15 17 N -0.39 -6.73 10.60 -9.91 -0.10 -6.84 15 18 C 0.06 0.77 7.10 -19.41 -0.14 0.63 15 19 Br 0.02 0.18 33.97 -68.01 -2.31 -2.13 15 20 C -0.25 -2.64 10.90 29.35 0.32 -2.32 15 21 S 0.22 2.48 22.30 -107.50 -2.40 0.08 15 22 H 0.05 1.25 7.87 -51.93 -0.41 0.84 15 23 H 0.04 0.83 5.64 -51.93 -0.29 0.54 15 24 H 0.03 0.53 8.14 -51.93 -0.42 0.10 15 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 26 H 0.09 2.20 6.64 -51.93 -0.34 1.85 15 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 28 H 0.39 6.49 7.67 -40.82 -0.31 6.18 15 29 H 0.19 1.35 8.06 -52.48 -0.42 0.93 15 LS Contribution 286.54 15.07 4.32 4.32 Total: -1.00 -29.34 286.54 -7.99 -37.34 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -2.56 Total: 2.70 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -0.37 Total: -1.29 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.28 Total: -44.02 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.07 Total: -11.77 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.40 Total: 0.08 kcal Atomic # 35 Polarization: 0.18 SS G_CDS: -2.31 Total: -2.13 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.34 -7.99 -37.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120288289.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.063 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds