Wall clock time and date at job start Tue Mar 31 2020 11:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 H 1.08999 * 109.47106 * 305.36570 * 3 2 1 5 5 C 1.50702 * 109.46889 * 185.37103 * 3 2 1 6 6 H 1.08004 * 119.99944 * 244.79662 * 5 3 2 7 7 C 1.37873 * 120.00187 * 64.79566 * 5 3 2 8 8 N 1.31515 * 119.99871 * 7.04842 * 7 5 3 9 9 Si 1.86803 * 120.00139 * 187.04386 * 7 5 3 10 10 H 1.48491 * 109.47003 * 84.99341 * 9 7 5 11 11 H 1.48504 * 109.47072 * 204.99537 * 9 7 5 12 12 H 1.48495 * 109.46926 * 324.99099 * 9 7 5 13 13 N 1.46500 * 109.47312 * 65.37188 * 3 2 1 14 14 C 1.34778 * 119.99915 * 274.99725 * 13 3 2 15 15 O 1.21621 * 119.99718 * 359.97438 * 14 13 3 16 16 C 1.47234 * 120.00056 * 179.97438 * 14 13 3 17 17 N 1.30591 * 125.53482 * 180.02562 * 16 14 13 18 18 C 1.30725 * 115.90302 * 179.97438 * 17 16 14 19 19 Br 1.89096 * 122.12281 * 179.97438 * 18 17 16 20 20 C 1.34314 * 115.75941 * 0.02562 * 18 17 16 21 21 S 1.71068 * 109.09458 * 359.74740 * 20 18 17 22 22 H 1.09002 * 109.46784 * 60.00411 * 1 2 3 23 23 H 1.08999 * 109.47328 * 300.00262 * 1 2 3 24 24 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47253 * 119.99337 * 2 1 3 26 26 H 1.08999 * 109.47328 * 239.99738 * 2 1 3 27 27 H 0.96998 * 120.00201 * 180.02562 * 8 7 5 28 28 H 0.96996 * 120.00012 * 95.00177 * 13 3 2 29 29 H 1.08005 * 125.45169 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5411 1.4446 -0.1330 6 1 4.1542 1.8171 0.6744 7 6 4.1317 0.9711 -1.2853 8 7 3.3878 0.6475 -2.3204 9 14 5.9887 0.7892 -1.3763 10 1 6.3863 -0.5217 -0.8032 11 1 6.4243 0.8624 -2.7941 12 1 6.6315 1.8825 -0.6039 13 7 1.6600 2.0948 1.2556 14 6 0.4434 2.6615 1.3793 15 8 -0.3388 2.6317 0.4485 16 6 0.0614 3.3165 2.6413 17 7 -1.0842 3.8968 2.8789 18 6 -1.2236 4.4198 4.0688 19 35 -2.8094 5.3025 4.5996 20 6 -0.1686 4.2914 4.8901 21 16 1.0724 3.4390 4.0778 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.8033 0.3140 -3.1310 28 1 2.2841 2.1189 1.9977 29 1 -0.1143 4.6626 5.9029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120288289.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:35 Heat of formation + Delta-G solvation = -12.968072 kcal Electronic energy + Delta-G solvation = -16439.260028 eV Core-core repulsion = 13534.745112 eV Total energy + Delta-G solvation = -2904.514917 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.38062 -40.23844 -36.98437 -34.41637 -33.33136 -32.74988 -30.75996 -29.24774 -27.36004 -25.00428 -23.12521 -21.49626 -20.94854 -20.13522 -18.69315 -17.63861 -17.29892 -16.77732 -16.51776 -15.86425 -15.64808 -15.07828 -14.64364 -14.51527 -13.97640 -13.50313 -13.26875 -12.93351 -12.88580 -12.61802 -12.23214 -12.11347 -12.04235 -11.67804 -11.52738 -11.47969 -11.10801 -10.94639 -10.79578 -10.53473 -9.99962 -9.76134 -8.17422 -6.32099 -0.99984 -0.21350 -0.04918 0.81474 0.97684 1.49045 1.49582 1.59031 1.98866 2.09137 2.46198 3.15066 3.51816 3.72978 4.00129 4.33726 4.46266 4.52249 4.70103 5.03949 5.22069 5.37090 5.39602 5.58970 5.71790 5.80651 6.04301 6.15599 6.70479 6.78042 7.20189 7.40580 8.90976 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.032206 B = 0.003366 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.205187 B = 8315.569376 C = 8828.240221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.114 4.114 3 C 0.278 3.722 4 H 0.009 0.991 5 C -0.549 4.549 6 H 0.079 0.921 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.269 1.269 11 H -0.291 1.291 12 H -0.262 1.262 13 N -0.687 5.687 14 C 0.578 3.422 15 O -0.550 6.550 16 C -0.033 4.033 17 N -0.422 5.422 18 C 0.024 3.976 19 Br 0.027 6.973 20 C -0.218 4.218 21 S 0.322 5.678 22 H 0.026 0.974 23 H 0.040 0.960 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.265 0.735 28 H 0.404 0.596 29 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.062 7.334 20.513 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.153 4.153 3 C 0.176 3.824 4 H 0.027 0.973 5 C -0.587 4.587 6 H 0.097 0.903 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.186 1.186 13 N -0.337 5.337 14 C 0.360 3.640 15 O -0.428 6.428 16 C -0.309 4.309 17 N -0.140 5.140 18 C -0.193 4.193 19 Br 0.109 6.891 20 C -0.362 4.362 21 S 0.576 5.424 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.239 0.761 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -5.545 7.203 19.636 21.638 hybrid contribution 0.229 0.207 -0.287 0.421 sum -5.316 7.410 19.349 21.391 Atomic orbital electron populations 1.21719 0.97058 0.99573 1.00234 1.21741 0.93692 0.98731 1.01178 1.18562 0.94400 0.89254 0.80228 0.97307 1.21498 0.90765 1.43612 1.02819 0.90343 1.25760 1.03206 0.94625 0.94627 1.70115 1.37530 1.43772 1.03929 0.85405 0.79112 0.79123 0.77007 1.19473 1.21714 1.18605 1.46075 1.13712 1.55474 1.18453 1.17060 0.82948 0.78945 0.85037 1.90813 1.51950 1.59735 1.40326 1.27298 0.94960 1.07763 1.00894 1.66387 1.20718 1.07957 1.18920 1.21915 0.97915 1.07908 0.91557 1.96752 1.29275 1.74896 1.88150 1.27273 0.96066 1.04870 1.08034 1.83656 1.14066 1.43351 1.01333 0.95454 0.94145 0.93026 0.92690 0.92092 0.92561 0.76082 0.74791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.52 71.98 0.61 -5.08 15 2 C -0.11 -5.35 5.49 30.59 0.17 -5.19 15 3 C 0.28 13.69 2.11 44.25 0.09 13.78 15 4 H 0.01 0.54 7.55 -2.39 -0.02 0.52 15 5 C -0.55 -27.50 8.67 25.60 0.22 -27.28 15 6 H 0.08 3.59 7.73 -2.91 -0.02 3.57 15 7 C 0.02 0.96 5.19 84.65 0.44 1.40 15 8 N -0.92 -51.39 12.00 21.45 0.26 -51.13 15 9 Si 0.97 40.29 29.54 68.60 2.03 42.32 15 10 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 11 H -0.29 -12.29 7.11 99.48 0.71 -11.59 15 12 H -0.26 -10.31 7.11 99.48 0.71 -9.60 15 13 N -0.69 -27.33 5.02 -449.56 -2.26 -29.59 15 14 C 0.58 23.80 6.39 86.61 0.55 24.36 15 15 O -0.55 -27.73 14.21 -4.10 -0.06 -27.79 15 16 C -0.03 -1.07 7.46 87.24 0.65 -0.42 15 17 N -0.42 -14.31 10.60 -185.25 -1.96 -16.28 15 18 C 0.02 0.60 7.10 83.96 0.60 1.20 15 19 Br 0.03 0.59 33.97 -20.37 -0.69 -0.11 15 20 C -0.22 -3.73 10.90 66.92 0.73 -3.00 15 21 S 0.32 6.10 22.30 -56.49 -1.26 4.84 15 22 H 0.03 1.31 7.87 -2.39 -0.02 1.30 15 23 H 0.04 1.76 5.64 -2.39 -0.01 1.74 15 24 H 0.05 1.98 8.14 -2.39 -0.02 1.96 15 25 H 0.05 2.33 8.14 -2.39 -0.02 2.31 15 26 H 0.06 3.18 6.64 -2.39 -0.02 3.16 15 27 H 0.27 14.17 8.31 -92.71 -0.77 13.40 15 28 H 0.40 12.99 7.67 -92.71 -0.71 12.28 15 29 H 0.24 1.86 8.06 -2.91 -0.02 1.83 15 Total: -1.00 -67.75 286.54 0.61 -67.15 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.49 Total: 10.80 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 4.07 Total: -0.22 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -3.96 Total: -97.00 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.06 Total: -27.79 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 16 Polarization: 6.10 SS G_CDS: -1.26 Total: 4.84 kcal Atomic # 35 Polarization: 0.59 SS G_CDS: -0.69 Total: -0.11 kcal Total: -67.75 0.61 -67.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120288289.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.179 kcal (2) G-P(sol) polarization free energy of solvation -67.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds