Wall clock time and date at job start Tue Mar 31 2020 12:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 5 5 C 1.46906 * 110.99888 * 84.99977 * 4 2 1 6 6 C 1.52999 * 109.46897 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46997 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47240 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99962 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31522 * 120.00243 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99980 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46921 * 60.00420 * 12 10 8 14 14 H 1.48506 * 109.46938 * 180.02562 * 12 10 8 15 15 H 1.48490 * 109.47056 * 300.00305 * 12 10 8 16 16 C 1.50700 * 109.47410 * 120.00071 * 2 1 3 17 17 N 1.29003 * 124.90531 * 255.00917 * 16 2 1 18 18 C 1.31807 * 117.13303 * 179.97438 * 17 16 2 19 19 C 1.33727 * 114.47325 * 359.97438 * 18 17 16 20 20 Br 1.89104 * 126.04321 * 180.02562 * 19 18 17 21 21 S 1.70982 * 124.90693 * 74.69078 * 16 2 1 22 22 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 24 24 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 25 25 H 1.00902 * 111.00533 * 321.04383 * 4 2 1 26 26 H 1.09000 * 109.47033 * 300.00113 * 5 4 2 27 27 H 1.09001 * 109.46544 * 60.00058 * 5 4 2 28 28 H 1.09000 * 109.47486 * 299.99976 * 6 5 4 29 29 H 1.09001 * 109.47362 * 60.00699 * 6 5 4 30 30 H 1.09000 * 109.46866 * 300.00212 * 7 6 5 31 31 H 1.08996 * 109.47261 * 59.99820 * 7 6 5 32 32 H 0.96992 * 120.00032 * 179.97438 * 11 10 8 33 33 H 1.07997 * 122.76302 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 2.5962 -0.5331 -3.5741 7 6 2.6622 0.4201 -4.7692 8 6 3.1677 -0.3242 -5.9781 9 1 3.4165 -1.3724 -5.9019 10 6 3.3114 0.3327 -7.1817 11 7 3.0079 1.6091 -7.2747 12 14 3.9386 -0.5897 -8.6801 13 1 3.0176 -1.7121 -8.9918 14 1 4.0025 0.3355 -9.8400 15 1 5.2948 -1.1255 -8.3996 16 6 2.0324 -0.7104 1.2304 17 7 2.5365 -0.1278 2.2651 18 6 2.9279 -0.9002 3.2588 19 6 2.7428 -2.2080 3.0500 20 35 3.1834 -3.6000 4.2518 21 16 2.0096 -2.4046 1.4600 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.4496 -1.4981 -1.4100 26 1 1.0870 0.6162 -2.5525 27 1 2.7589 1.0461 -2.1182 28 1 3.5917 -0.9264 -3.3682 29 1 1.9201 -1.3569 -3.8030 30 1 1.6669 0.8139 -4.9752 31 1 3.3384 1.2437 -4.5401 32 1 3.1094 2.0712 -8.1214 33 1 3.3624 -0.5090 4.1669 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126505000.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:25 Heat of formation + Delta-G solvation = 10.698978 kcal Electronic energy + Delta-G solvation = -15828.120139 eV Core-core repulsion = 13060.464597 eV Total energy + Delta-G solvation = -2767.655542 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 318.010 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89146 -38.46500 -35.86678 -34.04576 -33.07725 -31.09108 -29.50147 -27.75534 -26.37693 -24.49294 -22.98902 -22.10918 -20.83768 -19.12844 -18.46639 -17.01107 -16.59862 -16.46201 -16.07191 -15.79045 -15.44377 -14.81854 -14.47664 -14.21633 -13.82768 -13.66654 -13.32453 -12.98447 -12.97672 -12.67069 -12.50646 -12.45824 -12.30202 -12.24579 -11.52356 -11.47457 -11.36884 -11.13047 -10.73688 -10.52747 -10.26362 -9.89401 -9.53124 -8.18464 -6.29063 -0.58845 -0.19859 0.48579 0.72106 1.41431 1.44272 1.52075 1.60688 2.42166 2.69682 3.14941 3.42538 3.85536 3.98441 4.11603 4.19079 4.29041 4.40204 4.64687 4.72348 4.77057 4.88870 5.01160 5.09054 5.15495 5.26873 5.53904 5.77883 5.86213 5.89791 6.28110 6.33243 6.53846 6.88248 7.40154 8.93163 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.028475 B = 0.002356 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.066063 B =11880.563176 C =12515.474245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.153 3.847 3 H 0.102 0.898 4 N -0.687 5.687 5 C 0.076 3.924 6 C -0.093 4.093 7 C 0.025 3.975 8 C -0.543 4.543 9 H 0.060 0.940 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.963 3.037 13 H -0.266 1.266 14 H -0.284 1.284 15 H -0.268 1.268 16 C 0.072 3.928 17 N -0.498 5.498 18 C 0.080 3.920 19 C -0.276 4.276 20 Br 0.037 6.963 21 S 0.224 5.776 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.351 0.649 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.056 0.944 30 H -0.005 1.005 31 H -0.010 1.010 32 H 0.263 0.737 33 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 -10.577 26.443 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.039 3.961 3 H 0.120 0.880 4 N -0.319 5.319 5 C -0.052 4.052 6 C -0.131 4.131 7 C -0.012 4.012 8 C -0.581 4.581 9 H 0.078 0.922 10 C -0.199 4.199 11 N -0.574 5.574 12 Si 0.787 3.213 13 H -0.190 1.190 14 H -0.209 1.209 15 H -0.193 1.193 16 C -0.206 4.206 17 N -0.213 5.213 18 C -0.076 4.076 19 C -0.477 4.477 20 Br 0.119 6.881 21 S 0.479 5.521 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.170 0.830 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.013 0.987 31 H 0.009 0.991 32 H 0.072 0.928 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.801 -11.147 26.297 28.814 hybrid contribution -0.128 0.773 -0.557 0.961 sum -3.929 -10.374 25.741 28.029 Atomic orbital electron populations 1.22476 0.92874 1.03819 1.04046 1.20056 0.94483 0.97262 0.84282 0.87997 1.60407 1.57648 1.10371 1.03497 1.21861 0.99651 0.94790 0.88904 1.21377 1.00357 0.98183 0.93183 1.18962 0.94993 0.94457 0.92822 1.21692 1.43746 0.96907 0.95779 0.92212 1.25968 0.95726 0.95759 1.02405 1.70085 1.49911 1.10648 1.26780 0.85533 0.79214 0.78410 0.78099 1.19033 1.20920 1.19339 1.27369 0.99400 0.95558 0.98254 1.66434 1.14512 1.39096 1.01286 1.22158 0.98913 0.87392 0.99110 1.27967 1.18223 0.98758 1.02731 1.96727 1.92385 1.43047 1.55939 1.83969 1.53859 1.06656 1.07629 0.90798 0.90663 0.90533 0.82976 0.94190 0.91875 0.93107 0.92566 0.98693 0.99150 0.92805 0.78349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 9.14 71.98 0.66 -2.35 16 2 C 0.15 3.42 3.09 44.17 0.14 3.56 16 3 H 0.10 2.50 7.80 -2.39 -0.02 2.48 16 4 N -0.69 -17.51 6.04 -495.45 -2.99 -20.51 16 5 C 0.08 2.40 5.48 86.30 0.47 2.87 16 6 C -0.09 -3.66 5.41 30.60 0.17 -3.49 16 7 C 0.03 1.31 4.97 29.85 0.15 1.46 16 8 C -0.54 -30.79 9.11 25.60 0.23 -30.56 16 9 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 10 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 11 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 12 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 13 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 C 0.07 1.65 6.31 88.52 0.56 2.21 16 17 N -0.50 -12.25 10.54 -191.38 -2.02 -14.27 16 18 C 0.08 1.64 11.30 83.67 0.95 2.58 16 19 C -0.28 -5.37 7.08 66.79 0.47 -4.90 16 20 Br 0.04 0.58 34.09 -20.37 -0.69 -0.11 16 21 S 0.22 4.40 22.97 -56.49 -1.30 3.10 16 22 H 0.07 1.11 8.13 -2.38 -0.02 1.09 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.08 1.35 7.45 -2.39 -0.02 1.34 16 25 H 0.35 7.85 8.47 -89.69 -0.76 7.09 16 26 H 0.04 1.20 7.44 -2.39 -0.02 1.18 16 27 H 0.06 2.10 8.06 -2.39 -0.02 2.08 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 30 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.20 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -64.10 317.33 -0.08 -64.19 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 0.35 Total: 6.14 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 4.26 Total: -28.21 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -4.73 Total: -91.28 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.30 Total: 3.10 kcal Atomic # 35 Polarization: 0.58 SS G_CDS: -0.69 Total: -0.11 kcal Total: -64.10 -0.08 -64.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126505000.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.886 kcal (2) G-P(sol) polarization free energy of solvation -64.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds