Wall clock time and date at job start Tue Mar 31 2020 12:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46895 * 109.47363 * 65.00439 * 3 2 1 14 14 C 1.39836 * 110.99678 * 275.00140 * 13 3 2 15 15 C 1.38955 * 120.08058 * 299.71774 * 14 13 3 16 16 Cl 1.73599 * 120.03809 * 0.02562 * 15 14 13 17 17 C 1.38216 * 119.91681 * 179.72482 * 15 14 13 18 18 C 1.38277 * 120.08143 * 0.57859 * 17 15 14 19 19 N 1.48031 * 119.91837 * 179.71701 * 18 17 15 20 20 O 1.21798 * 119.99749 * 179.97438 * 19 18 17 21 21 O 1.21800 * 120.00130 * 359.97438 * 19 18 17 22 22 C 1.38279 * 120.16466 * 359.69900 * 18 17 15 23 23 C 1.38223 * 120.07938 * 359.97438 * 22 18 17 24 24 Cl 1.73594 * 120.04269 * 180.02562 * 23 22 18 25 25 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 26 26 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 27 27 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 29 29 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99768 * 38.94701 * 13 3 2 32 32 H 1.08000 * 119.95966 * 180.29734 * 17 15 14 33 33 H 1.07998 * 119.96056 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 7 1.6515 2.0993 1.2552 14 6 0.3568 2.6204 1.1682 15 6 0.0563 3.5831 0.2123 16 17 1.2880 4.1405 -0.8767 17 6 -1.2259 4.0917 0.1255 18 6 -2.2062 3.6525 0.9963 19 7 -3.5767 4.2042 0.9043 20 8 -4.4414 3.8180 1.6703 21 8 -3.8397 5.0444 0.0626 22 6 -1.9094 2.6988 1.9527 23 6 -0.6311 2.1806 2.0410 24 17 -0.2598 0.9829 3.2415 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0694 -2.9455 31 1 1.7343 1.4652 2.0357 32 1 -1.4614 4.8364 -0.6203 33 1 -2.6777 2.3578 2.6308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129932653.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:15 Heat of formation + Delta-G solvation = 3.550561 kcal Electronic energy + Delta-G solvation = -22570.841448 eV Core-core repulsion = 18879.426812 eV Total energy + Delta-G solvation = -3691.414636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.032 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.30242 -41.47932 -38.21159 -38.05709 -37.67904 -37.43200 -34.90100 -33.03384 -32.27045 -31.32055 -28.85017 -26.74384 -25.10863 -24.31859 -23.21916 -21.89383 -20.61390 -19.88153 -18.99003 -18.65280 -18.01846 -17.43962 -16.79485 -16.71956 -15.99286 -15.76131 -15.18932 -15.17017 -14.73080 -14.36574 -13.85228 -13.43539 -13.28300 -13.20064 -12.87190 -12.76282 -12.71798 -12.58337 -12.50624 -12.29359 -12.26621 -12.19844 -12.04776 -11.96249 -11.64260 -11.17754 -10.81588 -10.39125 -10.21369 -9.17175 -8.12691 -6.22070 -1.32046 -0.52804 0.06560 0.11719 0.72321 1.04331 1.42028 1.45981 1.53358 1.80108 2.40240 2.81925 3.17960 3.30386 3.36323 3.54937 3.58568 4.07795 4.26805 4.33748 4.40910 4.42981 4.55928 4.62807 4.92838 5.08197 5.12532 5.22843 5.36546 5.63470 5.67315 6.11300 6.20345 6.35643 6.50279 6.84470 7.45221 8.92188 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.004907 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.678230 B = 5704.875858 C = 6565.005015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.144 4.144 3 C 0.212 3.788 4 H 0.059 0.941 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.025 3.975 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.613 5.613 14 C 0.213 3.787 15 C -0.081 4.081 16 Cl -0.017 7.017 17 C -0.005 4.005 18 C -0.080 4.080 19 N 0.044 4.956 20 O -0.165 6.165 21 O -0.180 6.180 22 C 0.001 3.999 23 C -0.101 4.101 24 Cl -0.016 7.016 25 H 0.062 0.938 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.262 0.738 31 H 0.364 0.636 32 H 0.178 0.822 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 3.091 7.392 11.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.183 4.183 3 C 0.109 3.891 4 H 0.076 0.924 5 C -0.552 4.552 6 H 0.075 0.925 7 C -0.175 4.175 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.233 5.233 14 C 0.104 3.896 15 C -0.113 4.113 16 Cl 0.012 6.988 17 C -0.025 4.025 18 C -0.166 4.166 19 N 0.560 4.440 20 O -0.380 6.380 21 O -0.391 6.391 22 C -0.020 4.020 23 C -0.133 4.133 24 Cl 0.013 6.987 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.189 0.811 32 H 0.196 0.804 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.504 3.203 7.098 10.814 hybrid contribution 0.585 -0.705 -0.239 0.947 sum -6.919 2.498 6.859 10.058 Atomic orbital electron populations 1.22165 0.96965 1.01690 1.00922 1.22147 0.93906 0.99848 1.02404 1.19702 0.95663 0.89382 0.84360 0.92351 1.21198 0.91455 1.36926 1.05634 0.92534 1.25439 1.01534 0.95056 0.95461 1.69950 1.36146 1.38963 1.09940 0.85705 0.81470 0.78421 0.76928 1.20300 1.21383 1.19746 1.57616 1.15639 1.39334 1.10738 1.19102 0.88967 0.91194 0.90380 1.20117 0.91610 1.01093 0.98443 1.98440 1.52025 1.87371 1.60947 1.20805 0.88550 0.96908 0.96245 1.20349 0.82912 1.07069 1.06236 1.43383 1.02660 0.99009 0.98928 1.94515 1.41489 1.63305 1.38715 1.94545 1.86967 1.26645 1.30967 1.20790 0.95980 0.90468 0.94741 1.20421 0.93207 0.99829 0.99857 1.98398 1.94082 1.53324 1.52851 0.91917 0.94645 0.92403 0.90138 0.94043 0.92865 0.81055 0.80427 0.79645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.49 9.16 71.98 0.66 -4.83 16 2 C -0.14 -5.92 5.23 30.59 0.16 -5.76 16 3 C 0.21 9.05 1.51 44.17 0.07 9.12 16 4 H 0.06 2.67 4.94 -2.38 -0.01 2.66 16 5 C -0.51 -25.03 8.84 25.60 0.23 -24.80 16 6 H 0.06 2.80 7.81 -2.91 -0.02 2.78 16 7 C 0.02 1.25 5.29 84.66 0.45 1.69 16 8 N -0.91 -47.42 11.28 21.45 0.24 -47.18 16 9 Si 0.95 40.74 29.54 68.60 2.03 42.76 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.61 -22.04 6.03 -321.47 -1.94 -23.98 16 14 C 0.21 6.61 4.20 38.21 0.16 6.77 16 15 C -0.08 -2.50 5.96 22.44 0.13 -2.37 16 16 Cl -0.02 -0.59 25.65 -2.72 -0.07 -0.66 16 17 C 0.00 -0.12 9.33 22.27 0.21 0.09 16 18 C -0.08 -2.02 6.85 36.39 0.25 -1.77 16 19 N 0.04 1.21 4.45 -46.41 -0.21 1.00 16 20 O -0.16 -4.49 18.44 18.89 0.35 -4.14 16 21 O -0.18 -5.17 18.44 18.89 0.35 -4.82 16 22 C 0.00 0.01 9.33 22.28 0.21 0.22 16 23 C -0.10 -2.60 4.42 22.44 0.10 -2.50 16 24 Cl -0.02 -0.36 26.06 -2.72 -0.07 -0.43 16 25 H 0.06 1.88 2.86 -2.38 -0.01 1.87 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 3.87 5.94 -2.38 -0.01 3.86 16 29 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 30 H 0.26 13.22 8.31 -92.70 -0.77 12.45 16 31 H 0.36 12.17 6.39 -89.69 -0.57 11.59 16 32 H 0.18 4.07 7.60 -2.91 -0.02 4.05 16 33 H 0.19 3.36 7.60 -2.91 -0.02 3.34 16 Total: -1.00 -51.82 307.14 3.92 -47.90 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.62 Total: 13.67 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 2.62 Total: -24.13 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -1.90 Total: -70.16 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.70 Total: -8.96 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.14 Total: -1.09 kcal Total: -51.82 3.92 -47.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129932653.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.453 kcal (2) G-P(sol) polarization free energy of solvation -51.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds