Wall clock time and date at job start Tue Mar 31 2020 11:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21306 * 120.00095 * 2 1 4 4 C 1.46773 * 119.99819 * 180.02562 * 2 1 3 5 5 C 1.39999 * 120.22222 * 0.31832 * 4 2 1 6 6 C 1.37787 * 119.90656 * 180.30132 * 5 4 2 7 7 Br 1.89097 * 119.82593 * 179.70164 * 6 5 4 8 8 C 1.38725 * 120.35436 * 359.67644 * 6 5 4 9 9 C 1.38101 * 120.44919 * 359.97438 * 8 6 5 10 10 Cl 1.73602 * 119.96206 * 180.02562 * 9 8 6 11 11 C 1.38944 * 120.08676 * 0.02571 * 9 8 6 12 12 O 1.35469 * 120.18324 * 179.97438 * 11 9 8 13 13 C 1.34786 * 116.99869 * 89.99614 * 12 11 9 14 14 H 1.08002 * 120.00292 * 0.02562 * 13 12 11 15 15 C 1.38723 * 119.99908 * 179.72549 * 13 12 11 16 16 N 1.31500 * 120.00111 * 180.27782 * 15 13 12 17 17 Si 1.86800 * 120.00125 * 0.28061 * 15 13 12 18 18 H 1.48498 * 109.47112 * 89.99944 * 17 15 13 19 19 H 1.48499 * 109.47134 * 210.00055 * 17 15 13 20 20 H 1.48498 * 109.47011 * 329.99676 * 17 15 13 21 21 H 1.09001 * 109.47356 * 239.99572 * 1 2 3 22 22 H 1.09005 * 109.47125 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47364 * 119.99755 * 1 2 3 24 24 H 1.08003 * 120.04540 * 359.97438 * 5 4 2 25 25 H 1.08006 * 119.78011 * 180.02562 * 8 6 5 26 26 H 0.97005 * 120.00200 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2408 -1.2711 -0.0006 5 6 1.5455 -2.4862 -0.0078 6 6 2.2409 -3.6757 -0.0020 7 35 1.2993 -5.3156 -0.0033 8 6 3.6281 -3.6767 0.0042 9 6 4.3288 -2.4867 0.0042 10 17 6.0648 -2.5027 0.0113 11 6 3.6463 -1.2765 -0.0016 12 8 4.3317 -0.1080 -0.0011 13 6 4.6468 0.4171 -1.2019 14 1 4.3530 -0.0921 -2.1079 15 6 5.3431 1.6148 -1.2740 16 7 5.6457 2.1298 -2.4455 17 14 5.8508 2.4958 0.2929 18 1 7.1958 2.0258 0.7114 19 1 5.8926 3.9596 0.0464 20 1 4.8677 2.2026 1.3665 21 1 -0.3634 -0.5139 0.8899 22 1 -0.3634 1.0277 0.0005 23 1 -0.3634 -0.5138 -0.8900 24 1 0.4654 -2.4912 -0.0126 25 1 4.1638 -4.6145 0.0083 26 1 6.1329 2.9671 -2.4960 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153484194.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:24 Heat of formation + Delta-G solvation = -34.777814 kcal Electronic energy + Delta-G solvation = -16589.096577 eV Core-core repulsion = 13513.466367 eV Total energy + Delta-G solvation = -3075.630210 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 317.944 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.02037 -37.93717 -36.87480 -35.99097 -32.25654 -31.85524 -31.38694 -29.07845 -28.54679 -24.86538 -23.76989 -21.71815 -19.57087 -18.02862 -17.25032 -16.26053 -16.08199 -14.84667 -14.64546 -14.58423 -14.03975 -13.99706 -13.41334 -12.52459 -12.51401 -12.43572 -12.10213 -11.85876 -11.75319 -11.61567 -11.20414 -10.61853 -10.49565 -10.43097 -10.27675 -10.11282 -9.60293 -9.14321 -8.77376 -8.34685 -8.18107 -6.08371 -3.81913 0.76369 1.14406 1.50084 2.53213 2.67399 3.41839 3.43648 3.63714 3.69771 4.30527 4.52440 4.70524 4.95229 5.01577 5.23595 5.35690 5.36256 5.53219 5.55709 5.71016 5.95207 6.02709 6.11744 6.44884 6.61295 7.78414 8.08510 8.26026 9.26812 9.75468 11.02339 Molecular weight = 317.94amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.005497 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.247788 B = 5092.555127 C = 6126.169647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.376 3.624 3 O -0.395 6.395 4 C -0.187 4.187 5 C -0.034 4.034 6 C -0.122 4.122 7 Br -0.051 7.051 8 C -0.049 4.049 9 C -0.073 4.073 10 Cl -0.040 7.040 11 C 0.232 3.768 12 O -0.248 6.248 13 C -0.349 4.349 14 H 0.084 0.916 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.259 1.259 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.143 0.857 25 H 0.142 0.858 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 -14.857 5.720 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.249 3.751 3 O -0.265 6.265 4 C -0.190 4.190 5 C -0.054 4.054 6 C -0.202 4.202 7 Br 0.034 6.966 8 C -0.070 4.070 9 C -0.102 4.102 10 Cl -0.010 7.010 11 C 0.183 3.817 12 O -0.160 6.160 13 C -0.423 4.423 14 H 0.102 0.898 15 C -0.133 4.133 16 N -0.544 5.544 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.183 1.183 21 H 0.105 0.895 22 H 0.102 0.898 23 H 0.106 0.894 24 H 0.160 0.840 25 H 0.160 0.840 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.435 -14.614 5.801 18.871 hybrid contribution 0.540 0.517 0.454 0.875 sum -9.895 -14.096 6.255 18.323 Atomic orbital electron populations 1.22225 0.94315 1.04841 1.03787 1.22009 0.90924 0.87591 0.74613 1.90746 1.71301 1.32994 1.31474 1.21120 0.93710 0.95417 1.08788 1.21258 1.00136 0.89562 0.94473 1.21291 0.93859 0.91682 1.13322 1.96663 1.75033 1.26821 1.98055 1.20986 0.92030 0.97492 0.96492 1.21537 0.86712 0.93945 1.07974 1.98375 1.07207 1.98752 1.96710 1.18992 0.88955 0.87183 0.86528 1.83360 1.70697 1.31040 1.30943 1.20081 1.35863 1.06505 0.79874 0.89817 1.24124 0.96559 0.95311 0.97291 1.69614 1.41315 1.20545 1.22894 0.86271 0.79079 0.78123 0.83994 1.20605 1.21424 1.18325 0.89513 0.89811 0.89391 0.83979 0.84017 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 8.93 36.00 0.32 -2.01 15 2 C 0.38 6.85 7.21 -30.86 -0.22 6.63 15 3 O -0.39 -9.34 15.13 -16.36 -0.25 -9.59 15 4 C -0.19 -3.38 5.88 -104.91 -0.62 -3.99 15 5 C -0.03 -0.47 9.19 -39.09 -0.36 -0.83 15 6 C -0.12 -1.66 6.22 -39.57 -0.25 -1.91 15 7 Br -0.05 -0.55 33.68 -68.01 -2.29 -2.85 15 8 C -0.05 -0.74 9.54 -39.45 -0.38 -1.11 15 9 C -0.07 -1.36 6.33 -39.37 -0.25 -1.61 15 10 Cl -0.04 -0.75 28.50 -51.86 -1.48 -2.23 15 11 C 0.23 4.97 5.60 -38.45 -0.22 4.75 15 12 O -0.25 -6.44 6.46 -20.86 -0.13 -6.58 15 13 C -0.35 -9.98 9.28 30.91 0.29 -9.69 15 14 H 0.08 2.55 7.99 -52.49 -0.42 2.13 15 15 C 0.07 1.97 5.49 -17.51 -0.10 1.87 15 16 N -0.90 -27.57 13.96 55.48 0.77 -26.80 15 17 Si 0.90 23.58 28.62 -169.99 -4.86 18.71 15 18 H -0.28 -7.15 7.11 56.52 0.40 -6.75 15 19 H -0.29 -7.38 7.11 56.52 0.40 -6.97 15 20 H -0.26 -6.92 7.11 56.52 0.40 -6.51 15 21 H 0.09 0.80 8.09 -51.93 -0.42 0.38 15 22 H 0.08 0.99 8.12 -51.93 -0.42 0.57 15 23 H 0.09 0.87 8.08 -51.93 -0.42 0.45 15 24 H 0.14 1.47 7.05 -52.48 -0.37 1.10 15 25 H 0.14 1.77 8.06 -52.48 -0.42 1.35 15 26 H 0.27 7.82 8.31 -40.82 -0.34 7.49 15 LS Contribution 277.05 15.07 4.18 4.18 Total: -1.00 -32.38 277.05 -7.45 -39.83 By element: Atomic # 1 Polarization: -5.17 SS G_CDS: -1.61 Total: -6.77 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -1.77 Total: -7.90 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.77 Total: -26.80 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.38 Total: -16.17 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -4.86 Total: 18.71 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.48 Total: -2.23 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.29 Total: -2.85 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.38 -7.45 -39.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153484194.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.050 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds