Wall clock time and date at job start Tue Mar 31 2020 11:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21306 * 120.00095 * 2 1 4 4 C 1.46773 * 119.99819 * 180.02562 * 2 1 3 5 5 C 1.39999 * 120.22222 * 0.31832 * 4 2 1 6 6 C 1.37787 * 119.90656 * 180.30132 * 5 4 2 7 7 Br 1.89097 * 119.82593 * 179.70164 * 6 5 4 8 8 C 1.38725 * 120.35436 * 359.67644 * 6 5 4 9 9 C 1.38101 * 120.44919 * 359.97438 * 8 6 5 10 10 Cl 1.73602 * 119.96206 * 180.02562 * 9 8 6 11 11 C 1.38944 * 120.08676 * 0.02571 * 9 8 6 12 12 O 1.35469 * 120.18324 * 179.97438 * 11 9 8 13 13 C 1.34786 * 116.99869 * 89.99614 * 12 11 9 14 14 H 1.08002 * 120.00292 * 0.02562 * 13 12 11 15 15 C 1.38723 * 119.99908 * 179.72549 * 13 12 11 16 16 N 1.31500 * 120.00111 * 180.27782 * 15 13 12 17 17 Si 1.86800 * 120.00125 * 0.28061 * 15 13 12 18 18 H 1.48498 * 109.47112 * 89.99944 * 17 15 13 19 19 H 1.48499 * 109.47134 * 210.00055 * 17 15 13 20 20 H 1.48498 * 109.47011 * 329.99676 * 17 15 13 21 21 H 1.09001 * 109.47356 * 239.99572 * 1 2 3 22 22 H 1.09005 * 109.47125 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47364 * 119.99755 * 1 2 3 24 24 H 1.08003 * 120.04540 * 359.97438 * 5 4 2 25 25 H 1.08006 * 119.78011 * 180.02562 * 8 6 5 26 26 H 0.97005 * 120.00200 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2408 -1.2711 -0.0006 5 6 1.5455 -2.4862 -0.0078 6 6 2.2409 -3.6757 -0.0020 7 35 1.2993 -5.3156 -0.0033 8 6 3.6281 -3.6767 0.0042 9 6 4.3288 -2.4867 0.0042 10 17 6.0648 -2.5027 0.0113 11 6 3.6463 -1.2765 -0.0016 12 8 4.3317 -0.1080 -0.0011 13 6 4.6468 0.4171 -1.2019 14 1 4.3530 -0.0921 -2.1079 15 6 5.3431 1.6148 -1.2740 16 7 5.6457 2.1298 -2.4455 17 14 5.8508 2.4958 0.2929 18 1 7.1958 2.0258 0.7114 19 1 5.8926 3.9596 0.0464 20 1 4.8677 2.2026 1.3665 21 1 -0.3634 -0.5139 0.8899 22 1 -0.3634 1.0277 0.0005 23 1 -0.3634 -0.5138 -0.8900 24 1 0.4654 -2.4912 -0.0126 25 1 4.1638 -4.6145 0.0083 26 1 6.1329 2.9671 -2.4960 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153484194.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:23 Heat of formation + Delta-G solvation = -54.354144 kcal Electronic energy + Delta-G solvation = -16589.945471 eV Core-core repulsion = 13513.466367 eV Total energy + Delta-G solvation = -3076.479104 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 317.944 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.47966 -39.43344 -38.53914 -37.43322 -34.29326 -33.23031 -32.69597 -30.19892 -29.89078 -26.87762 -25.10455 -23.15195 -20.93120 -20.08047 -18.93382 -17.66714 -17.52657 -16.51884 -16.00164 -15.92774 -15.70595 -15.36352 -15.08272 -14.31952 -14.18190 -13.95070 -13.47386 -13.08047 -12.99125 -12.91254 -12.89588 -12.34049 -12.27818 -11.96901 -11.81470 -11.45961 -11.37004 -10.67706 -10.43938 -10.08688 -9.56257 -8.32258 -6.03714 -0.57978 -0.19350 0.36314 1.12744 1.29968 1.33251 1.34348 1.53499 2.33310 2.38686 3.02543 3.06272 3.23698 3.79425 3.86548 4.02611 4.11325 4.33973 4.58145 4.67615 4.72097 4.75178 4.99752 5.18533 5.33840 5.51506 6.11520 6.74943 7.05263 7.72922 8.82861 Molecular weight = 317.94amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.005497 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.247788 B = 5092.555127 C = 6126.169647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.370 3.630 3 O -0.466 6.466 4 C -0.201 4.201 5 C -0.011 4.011 6 C -0.115 4.115 7 Br -0.008 7.008 8 C -0.037 4.037 9 C -0.087 4.087 10 Cl -0.054 7.054 11 C 0.172 3.828 12 O -0.268 6.268 13 C -0.320 4.320 14 H 0.050 0.950 15 C 0.010 3.990 16 N -0.943 5.943 17 Si 0.953 3.047 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.271 1.271 21 H 0.125 0.875 22 H 0.082 0.918 23 H 0.118 0.882 24 H 0.189 0.811 25 H 0.169 0.831 26 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.250 -17.415 6.792 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.248 3.752 3 O -0.342 6.342 4 C -0.204 4.204 5 C -0.030 4.030 6 C -0.195 4.195 7 Br 0.077 6.923 8 C -0.057 4.057 9 C -0.115 4.115 10 Cl -0.025 7.025 11 C 0.126 3.874 12 O -0.181 6.181 13 C -0.396 4.396 14 H 0.068 0.932 15 C -0.184 4.184 16 N -0.589 5.589 17 Si 0.778 3.222 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.196 1.196 21 H 0.143 0.857 22 H 0.101 0.899 23 H 0.136 0.864 24 H 0.206 0.794 25 H 0.186 0.814 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.987 -17.226 6.889 22.646 hybrid contribution 1.120 0.959 0.124 1.480 sum -11.866 -16.267 7.014 21.322 Atomic orbital electron populations 1.22260 0.88901 1.06017 1.06849 1.23094 0.93823 0.86534 0.71793 1.90724 1.73230 1.35079 1.35132 1.21341 0.92542 0.97406 1.09090 1.21663 1.02077 0.87731 0.91562 1.21624 0.93661 0.93594 1.10573 1.96740 1.73781 1.23910 1.97823 1.21284 0.92849 0.97024 0.94567 1.21593 0.86246 0.94422 1.09276 1.98360 1.08446 1.98780 1.96883 1.19529 0.90618 0.86403 0.90896 1.83329 1.71865 1.33390 1.29480 1.19800 1.34040 1.05526 0.80244 0.93241 1.24802 0.97488 0.96393 0.99753 1.69703 1.43297 1.21458 1.24482 0.85441 0.78660 0.77578 0.80483 1.19482 1.20405 1.19569 0.85672 0.89900 0.86407 0.79420 0.81372 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.76 8.93 71.23 0.64 -3.12 15 2 C 0.37 13.27 7.21 27.92 0.20 13.47 15 3 O -0.47 -22.86 15.13 17.83 0.27 -22.59 15 4 C -0.20 -7.02 5.88 -20.05 -0.12 -7.14 15 5 C -0.01 -0.25 9.19 22.59 0.21 -0.05 15 6 C -0.11 -2.68 6.22 22.28 0.14 -2.54 15 7 Br -0.01 -0.13 33.68 -20.37 -0.69 -0.82 15 8 C -0.04 -1.01 9.54 22.35 0.21 -0.80 15 9 C -0.09 -3.23 6.33 22.41 0.14 -3.08 15 10 Cl -0.05 -2.06 28.50 -2.72 -0.08 -2.14 15 11 C 0.17 7.50 5.60 23.00 0.13 7.63 15 12 O -0.27 -14.45 6.46 1.72 0.01 -14.44 15 13 C -0.32 -19.22 9.28 67.94 0.63 -18.59 15 14 H 0.05 3.21 7.99 -2.91 -0.02 3.19 15 15 C 0.01 0.63 5.49 84.86 0.47 1.10 15 16 N -0.94 -60.09 13.96 21.62 0.30 -59.79 15 17 Si 0.95 50.40 28.62 68.60 1.96 52.36 15 18 H -0.27 -13.57 7.11 99.48 0.71 -12.86 15 19 H -0.28 -14.07 7.11 99.48 0.71 -13.37 15 20 H -0.27 -14.69 7.11 99.48 0.71 -13.98 15 21 H 0.13 1.64 8.09 -2.39 -0.02 1.62 15 22 H 0.08 1.76 8.12 -2.38 -0.02 1.74 15 23 H 0.12 1.76 8.08 -2.39 -0.02 1.74 15 24 H 0.19 2.71 7.05 -2.91 -0.02 2.69 15 25 H 0.17 3.66 8.06 -2.91 -0.02 3.64 15 26 H 0.27 16.37 8.31 -92.70 -0.77 15.60 15 Total: -1.00 -76.19 277.05 5.65 -70.54 By element: Atomic # 1 Polarization: -11.23 SS G_CDS: 1.23 Total: -10.00 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 2.65 Total: -13.13 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.30 Total: -59.79 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: 0.28 Total: -37.03 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 1.96 Total: 52.36 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.08 Total: -2.14 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -0.69 Total: -0.82 kcal Total: -76.19 5.65 -70.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153484194.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.187 kcal (2) G-P(sol) polarization free energy of solvation -76.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds