Wall clock time and date at job start Tue Mar 31 2020 12:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48500 * 109.46970 * 269.99801 * 3 2 1 5 5 H 1.48505 * 109.47256 * 29.99316 * 3 2 1 6 6 H 1.48495 * 109.47519 * 149.99478 * 3 2 1 7 7 C 1.38797 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00443 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00365 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47641 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.47212 * 179.97438 * 12 11 10 14 14 C 1.35828 * 119.61991 * 89.99662 * 13 12 11 15 15 C 1.35432 * 120.67769 * 179.97438 * 14 13 12 16 16 Cl 1.73603 * 120.03408 * 179.97438 * 15 14 13 17 17 C 1.40260 * 119.92943 * 0.02562 * 15 14 13 18 18 C 1.36407 * 119.26578 * 359.97438 * 17 15 14 19 19 N 1.48000 * 120.33791 * 180.02562 * 18 17 15 20 20 O 1.21800 * 120.00211 * 0.02562 * 19 18 17 21 21 O 1.21803 * 119.99984 * 179.97438 * 19 18 17 22 22 C 1.34649 * 119.62275 * 269.72697 * 13 12 11 23 23 O 1.22069 * 119.97841 * 0.02562 * 22 13 12 24 24 H 0.96999 * 119.99948 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47163 * 59.99693 * 10 9 7 26 26 H 1.09001 * 109.46663 * 299.99981 * 10 9 7 27 27 H 1.09002 * 109.47103 * 59.99643 * 11 10 9 28 28 H 1.08998 * 109.46862 * 300.00456 * 11 10 9 29 29 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 30 30 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 31 31 H 1.07999 * 119.66168 * 359.97438 * 14 13 12 32 32 H 1.08001 * 120.36979 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6528 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9794 -5.3243 -0.0001 12 6 3.1514 -6.3077 -0.0008 13 7 2.6377 -7.6797 -0.0008 14 6 2.4017 -8.3082 -1.1815 15 6 1.9273 -9.5765 -1.2065 16 17 1.6311 -10.3636 -2.7252 17 6 1.6747 -10.2530 -0.0041 18 6 1.9126 -9.6193 1.1802 19 7 1.6549 -10.3110 2.4630 20 8 1.2287 -11.4520 2.4649 21 8 1.8700 -9.7396 3.5170 22 6 2.4100 -8.3052 1.1697 23 8 2.6313 -7.7285 2.2226 24 1 -0.4850 0.8400 -0.0004 25 1 3.1245 -3.7314 0.8905 26 1 3.1244 -3.7314 -0.8895 27 1 1.3710 -5.4840 -0.8903 28 1 1.3705 -5.4846 0.8896 29 1 3.7602 -6.1481 0.8892 30 1 3.7599 -6.1472 -0.8908 31 1 2.5943 -7.7913 -2.1100 32 1 1.2960 -11.2643 -0.0158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158610084.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:06 Heat of formation + Delta-G solvation = -15.154207 kcal Electronic energy + Delta-G solvation = -21036.615225 eV Core-core repulsion = 17346.433196 eV Total energy + Delta-G solvation = -3690.182029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.027 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.71247 -41.61740 -38.17717 -37.19285 -36.48007 -36.03441 -33.20083 -32.52882 -31.00273 -27.48127 -27.21818 -25.67197 -23.83363 -23.57914 -21.80383 -19.79430 -19.26219 -17.95407 -17.82722 -17.73506 -17.58530 -16.69024 -16.30569 -15.80792 -15.11419 -14.89847 -14.37288 -14.14081 -13.74709 -13.71840 -13.50973 -12.58614 -12.57562 -12.03442 -11.84316 -11.63372 -11.62103 -11.40549 -11.20641 -11.15662 -11.12925 -11.02582 -10.86076 -10.74049 -10.61502 -9.76565 -9.16316 -8.89892 -8.48293 -6.67980 -6.33420 -4.05987 -0.78817 0.74703 0.76498 0.89442 1.43630 1.95816 2.61797 3.12213 3.15461 3.22854 3.38281 3.52294 3.66562 3.80921 4.10877 4.26330 4.35019 4.58975 4.78651 4.83108 5.02461 5.03883 5.13937 5.34140 5.40723 5.67755 5.90636 5.95489 6.17355 6.22731 6.40144 7.13054 7.50086 7.58505 8.25546 9.13033 10.74705 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.002773 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.488019 B =10094.948458 C =11128.293103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.520 4.520 8 H 0.074 0.926 9 S -0.124 6.124 10 C -0.114 4.114 11 C -0.114 4.114 12 C 0.087 3.913 13 N -0.475 5.475 14 C 0.224 3.776 15 C -0.181 4.181 16 Cl -0.019 7.019 17 C 0.093 3.907 18 C -0.178 4.178 19 N 0.051 4.949 20 O -0.183 6.183 21 O -0.119 6.119 22 C 0.531 3.469 23 O -0.471 6.471 24 H 0.269 0.731 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.193 0.807 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.915 -20.959 -7.489 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.668 4.668 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.153 4.153 12 C -0.033 4.033 13 N -0.182 5.182 14 C 0.088 3.912 15 C -0.213 4.213 16 Cl 0.010 6.990 17 C 0.069 3.931 18 C -0.267 4.267 19 N 0.569 4.431 20 O -0.389 6.389 21 O -0.343 6.343 22 C 0.326 3.674 23 O -0.345 6.345 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.210 0.790 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.878 -20.360 -7.469 22.229 hybrid contribution 1.654 0.960 -0.024 1.912 sum 6.531 -19.400 -7.493 21.798 Atomic orbital electron populations 1.70010 1.05963 1.27556 1.46845 1.25026 0.95100 0.99190 0.94394 0.86139 0.79481 0.81391 0.78391 1.20222 1.20667 1.19601 1.22666 0.94533 0.90535 1.59060 0.90777 1.84732 1.08552 0.99437 1.96906 1.23164 1.03696 0.95958 1.03514 1.21685 0.96299 0.93211 1.04138 1.22630 0.98657 0.75464 1.06562 1.45914 1.50878 1.16176 1.05231 1.22446 0.85907 0.91218 0.91598 1.19510 1.17696 0.95035 0.89099 1.98424 1.95082 1.79212 1.26315 1.21371 0.82916 1.00341 0.88496 1.21451 1.22650 0.96929 0.85709 1.42701 0.98347 1.00306 1.01710 1.94526 1.48214 1.02379 1.93785 1.94672 1.53808 1.67680 1.18109 1.15956 0.81295 0.85836 0.84291 1.91199 1.49363 1.65912 1.28012 0.92145 0.91355 0.91585 0.90676 0.90195 0.86738 0.87530 0.78970 0.80949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.24 13.22 55.49 0.73 -24.50 16 2 C 0.07 1.99 5.49 -17.43 -0.10 1.89 16 3 Si 0.92 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.52 -14.23 9.50 30.94 0.29 -13.93 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.12 -3.06 21.44 -107.50 -2.30 -5.36 16 10 C -0.11 -1.99 5.67 37.15 0.21 -1.77 16 11 C -0.11 -1.51 5.54 -26.74 -0.15 -1.66 16 12 C 0.09 0.81 5.34 -4.04 -0.02 0.79 16 13 N -0.47 -4.29 2.59 -119.73 -0.31 -4.60 16 14 C 0.22 1.27 10.05 -16.78 -0.17 1.10 16 15 C -0.18 -1.10 6.29 -39.82 -0.25 -1.35 16 16 Cl -0.02 -0.10 28.95 -51.86 -1.50 -1.60 16 17 C 0.09 0.72 9.40 -39.48 -0.37 0.35 16 18 C -0.18 -2.09 6.87 -79.76 -0.55 -2.64 16 19 N 0.05 0.74 4.45 34.06 0.15 0.89 16 20 O -0.18 -2.54 18.47 -29.46 -0.54 -3.09 16 21 O -0.12 -2.02 17.44 -36.39 -0.63 -2.66 16 22 C 0.53 6.77 7.40 -15.46 -0.11 6.66 16 23 O -0.47 -7.92 14.80 -16.93 -0.25 -8.17 16 24 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 26 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.11 1.21 7.38 -51.93 -0.38 0.83 16 30 H 0.11 0.61 8.01 -51.93 -0.42 0.19 16 31 H 0.19 0.38 8.04 -52.49 -0.42 -0.04 16 32 H 0.17 1.03 7.62 -52.49 -0.40 0.63 16 LS Contribution 323.53 15.07 4.88 4.88 Total: -1.00 -34.45 323.53 -8.88 -43.33 By element: Atomic # 1 Polarization: -1.52 SS G_CDS: -2.86 Total: -4.38 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -1.21 Total: -10.56 kcal Atomic # 7 Polarization: -28.79 SS G_CDS: 0.58 Total: -28.21 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -1.43 Total: -13.91 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -2.30 Total: -5.36 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.50 Total: -1.60 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.45 -8.88 -43.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158610084.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.178 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds