Wall clock time and date at job start Tue Mar 31 2020 12:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48500 * 109.46970 * 269.99801 * 3 2 1 5 5 H 1.48505 * 109.47256 * 29.99316 * 3 2 1 6 6 H 1.48495 * 109.47519 * 149.99478 * 3 2 1 7 7 C 1.38797 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00443 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00365 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47641 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.47212 * 179.97438 * 12 11 10 14 14 C 1.35828 * 119.61991 * 89.99662 * 13 12 11 15 15 C 1.35432 * 120.67769 * 179.97438 * 14 13 12 16 16 Cl 1.73603 * 120.03408 * 179.97438 * 15 14 13 17 17 C 1.40260 * 119.92943 * 0.02562 * 15 14 13 18 18 C 1.36407 * 119.26578 * 359.97438 * 17 15 14 19 19 N 1.48000 * 120.33791 * 180.02562 * 18 17 15 20 20 O 1.21800 * 120.00211 * 0.02562 * 19 18 17 21 21 O 1.21803 * 119.99984 * 179.97438 * 19 18 17 22 22 C 1.34649 * 119.62275 * 269.72697 * 13 12 11 23 23 O 1.22069 * 119.97841 * 0.02562 * 22 13 12 24 24 H 0.96999 * 119.99948 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47163 * 59.99693 * 10 9 7 26 26 H 1.09001 * 109.46663 * 299.99981 * 10 9 7 27 27 H 1.09002 * 109.47103 * 59.99643 * 11 10 9 28 28 H 1.08998 * 109.46862 * 300.00456 * 11 10 9 29 29 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 30 30 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 31 31 H 1.07999 * 119.66168 * 359.97438 * 14 13 12 32 32 H 1.08001 * 120.36979 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6528 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9794 -5.3243 -0.0001 12 6 3.1514 -6.3077 -0.0008 13 7 2.6377 -7.6797 -0.0008 14 6 2.4017 -8.3082 -1.1815 15 6 1.9273 -9.5765 -1.2065 16 17 1.6311 -10.3636 -2.7252 17 6 1.6747 -10.2530 -0.0041 18 6 1.9126 -9.6193 1.1802 19 7 1.6549 -10.3110 2.4630 20 8 1.2287 -11.4520 2.4649 21 8 1.8700 -9.7396 3.5170 22 6 2.4100 -8.3052 1.1697 23 8 2.6313 -7.7285 2.2226 24 1 -0.4850 0.8400 -0.0004 25 1 3.1245 -3.7314 0.8905 26 1 3.1244 -3.7314 -0.8895 27 1 1.3710 -5.4840 -0.8903 28 1 1.3705 -5.4846 0.8896 29 1 3.7602 -6.1481 0.8892 30 1 3.7599 -6.1472 -0.8908 31 1 2.5943 -7.7913 -2.1100 32 1 1.2960 -11.2643 -0.0158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158610084.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:06 Heat of formation + Delta-G solvation = -35.847136 kcal Electronic energy + Delta-G solvation = -21037.512537 eV Core-core repulsion = 17346.433196 eV Total energy + Delta-G solvation = -3691.079342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.027 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.62041 -42.56469 -38.99792 -37.88454 -37.52558 -36.84267 -34.63116 -34.21774 -31.79247 -28.51480 -28.16003 -27.65756 -24.83100 -24.40103 -22.88517 -20.72006 -20.18584 -19.62346 -18.82228 -18.74512 -18.51359 -17.56439 -17.21338 -16.90360 -16.57924 -16.21756 -15.93970 -14.98619 -14.83961 -14.45185 -14.38697 -14.03481 -13.63810 -13.49033 -12.93409 -12.83943 -12.75267 -12.72635 -12.54643 -12.30716 -12.27793 -12.21032 -12.00183 -11.94410 -11.62549 -11.43744 -11.15350 -10.35272 -9.65670 -8.68920 -8.38971 -6.15382 -1.56245 -0.14010 -0.01803 0.07324 0.75190 1.17384 1.32529 1.39234 1.48863 1.70508 1.82987 2.26598 2.80028 2.96329 3.13599 3.18057 3.28048 3.53149 3.65299 3.82295 3.87035 4.06137 4.22615 4.25657 4.43167 4.67906 4.76437 4.87272 5.08535 5.12415 5.29689 5.39518 6.16950 6.25356 6.46657 7.04191 8.70229 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.002773 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.488019 B =10094.948458 C =11128.293103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.015 3.985 3 Si 0.993 3.007 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.078 0.922 9 S -0.201 6.201 10 C -0.088 4.088 11 C -0.105 4.105 12 C 0.097 3.903 13 N -0.470 5.470 14 C 0.247 3.753 15 C -0.174 4.174 16 Cl 0.003 6.997 17 C 0.120 3.880 18 C -0.212 4.212 19 N 0.056 4.944 20 O -0.154 6.154 21 O -0.211 6.211 22 C 0.524 3.476 23 O -0.528 6.528 24 H 0.271 0.729 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.162 0.838 31 H 0.245 0.755 32 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.385 -21.797 -11.173 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.190 4.190 3 Si 0.815 3.185 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.683 4.683 8 H 0.096 0.904 9 S 0.027 5.973 10 C -0.238 4.238 11 C -0.144 4.144 12 C -0.024 4.024 13 N -0.176 5.176 14 C 0.113 3.887 15 C -0.206 4.206 16 Cl 0.031 6.969 17 C 0.096 3.904 18 C -0.303 4.303 19 N 0.566 4.434 20 O -0.371 6.371 21 O -0.413 6.413 22 C 0.322 3.678 23 O -0.406 6.406 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.180 0.820 31 H 0.261 0.739 32 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 6.394 -21.106 -11.069 24.675 hybrid contribution 1.156 0.992 0.818 1.729 sum 7.549 -20.114 -10.251 23.804 Atomic orbital electron populations 1.70153 1.07742 1.28535 1.48080 1.26061 0.95979 1.03174 0.93817 0.85029 0.78144 0.76421 0.78924 1.18942 1.20451 1.18710 1.23045 0.94865 0.91743 1.58688 0.90419 1.84759 1.13969 1.01444 1.97089 1.23066 1.00504 0.95922 1.04262 1.21533 0.97660 0.91734 1.03445 1.22552 0.96811 0.74403 1.08599 1.45772 1.50478 1.16014 1.05321 1.23296 0.82781 0.90983 0.91654 1.19579 1.16701 0.95132 0.89198 1.98455 1.94932 1.78887 1.24584 1.21687 0.80238 1.00951 0.87536 1.21327 1.26655 0.97252 0.85035 1.43031 0.97561 1.00231 1.02560 1.94450 1.46095 1.02515 1.94087 1.94688 1.58265 1.68490 1.19883 1.16235 0.80695 0.86176 0.84645 1.91169 1.52018 1.67180 1.30273 0.92032 0.92125 0.89092 0.88815 0.93577 0.88323 0.82016 0.73883 0.78774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.71 13.22 21.65 0.29 -53.42 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 0.99 42.53 29.55 68.60 2.03 44.55 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.54 -29.44 9.50 67.95 0.65 -28.79 16 8 H 0.08 4.05 7.80 -2.91 -0.02 4.02 16 9 S -0.20 -10.03 21.44 -56.49 -1.21 -11.24 16 10 C -0.09 -2.95 5.67 71.98 0.41 -2.54 16 11 C -0.10 -2.59 5.54 30.59 0.17 -2.42 16 12 C 0.10 1.51 5.34 86.38 0.46 1.97 16 13 N -0.47 -7.21 2.59 -650.86 -1.68 -8.90 16 14 C 0.25 1.55 10.05 83.43 0.84 2.38 16 15 C -0.17 -1.34 6.29 22.11 0.14 -1.20 16 16 Cl 0.00 0.02 28.95 -2.72 -0.08 -0.06 16 17 C 0.12 1.54 9.40 22.33 0.21 1.75 16 18 C -0.21 -4.92 6.87 36.51 0.25 -4.67 16 19 N 0.06 1.71 4.45 -46.17 -0.21 1.50 16 20 O -0.15 -4.26 18.47 18.89 0.35 -3.91 16 21 O -0.21 -8.00 17.44 25.51 0.44 -7.56 16 22 C 0.52 13.45 7.40 84.82 0.63 14.08 16 23 O -0.53 -19.10 14.80 15.29 0.23 -18.87 16 24 H 0.27 14.92 8.31 -92.71 -0.77 14.14 16 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.10 1.97 7.38 -2.39 -0.02 1.95 16 30 H 0.16 0.83 8.01 -2.39 -0.02 0.81 16 31 H 0.25 -0.92 8.04 -2.91 -0.02 -0.94 16 32 H 0.20 1.63 7.62 -2.91 -0.02 1.60 16 Total: -1.00 -83.05 323.53 5.54 -77.51 By element: Atomic # 1 Polarization: -2.60 SS G_CDS: 1.17 Total: -1.43 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 4.22 Total: -18.18 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -1.60 Total: -60.82 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: 1.02 Total: -30.34 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -10.03 SS G_CDS: -1.21 Total: -11.24 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.08 Total: -0.06 kcal Total: -83.05 5.54 -77.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158610084.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.665 kcal (2) G-P(sol) polarization free energy of solvation -83.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds