Wall clock time and date at job start Tue Mar 31 2020 11:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47057 * 2 1 4 4 C 1.46899 * 111.00085 * 58.52045 * 3 2 1 5 5 C 1.52997 * 109.47450 * 66.04628 * 4 3 2 6 6 C 1.50698 * 109.47505 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99768 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00255 * 179.97438 * 6 5 4 9 9 N 1.31504 * 119.99876 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99694 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.46855 * 90.00169 * 10 8 6 12 12 H 1.48502 * 109.47070 * 209.99777 * 10 8 6 13 13 H 1.48498 * 109.47305 * 329.99800 * 10 8 6 14 14 C 1.46898 * 111.00047 * 294.56299 * 3 2 1 15 15 C 1.52997 * 109.47425 * 287.82258 * 14 3 2 16 16 C 1.53117 * 109.52471 * 176.27452 * 15 14 3 17 17 C 1.53044 * 109.27885 * 177.55826 * 16 15 14 18 18 N 1.46850 * 109.52135 * 300.82186 * 17 16 15 19 19 C 1.39005 * 110.99611 * 185.84221 * 18 17 16 20 20 C 1.39133 * 119.70932 * 55.51450 * 19 18 17 21 21 C 1.38291 * 119.09511 * 179.75294 * 20 19 18 22 22 C 1.38888 * 118.50896 * 0.51110 * 21 20 19 23 23 C 1.38023 * 119.32633 * 359.73039 * 22 21 20 24 24 N 1.31975 * 120.85442 * 0.02562 * 23 22 21 25 25 C 1.46840 * 111.19871 * 61.73830 * 18 17 16 26 26 C 1.53029 * 109.52773 * 298.25929 * 25 18 17 27 27 H 1.09005 * 109.46976 * 60.01849 * 1 2 3 28 28 H 1.08993 * 109.47109 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47199 * 300.02214 * 1 2 3 30 30 H 1.09001 * 109.46817 * 239.99832 * 2 1 3 31 31 H 1.08999 * 109.46905 * 120.00210 * 2 1 3 32 32 H 1.09000 * 109.47069 * 186.04321 * 4 3 2 33 33 H 1.09001 * 109.47361 * 306.04387 * 4 3 2 34 34 H 1.09004 * 109.46632 * 300.00393 * 5 4 3 35 35 H 1.09001 * 109.47035 * 59.99560 * 5 4 3 36 36 H 0.97010 * 119.99697 * 179.97438 * 9 8 6 37 37 H 1.09005 * 109.47109 * 167.81852 * 14 3 2 38 38 H 1.09001 * 109.46841 * 47.82280 * 14 3 2 39 39 H 1.09001 * 109.57676 * 56.10850 * 15 14 3 40 40 H 1.08995 * 109.50132 * 297.50027 * 16 15 14 41 41 H 1.08996 * 109.50456 * 57.61968 * 16 15 14 42 42 H 1.08998 * 109.46234 * 60.83404 * 17 16 15 43 43 H 1.08991 * 109.45963 * 180.80159 * 17 16 15 44 44 H 1.08006 * 120.45217 * 359.97438 * 20 19 18 45 45 H 1.08001 * 120.74697 * 180.21934 * 21 20 19 46 46 H 1.07995 * 120.33372 * 179.70960 * 22 21 20 47 47 H 1.07995 * 119.56731 * 180.02562 * 23 22 21 48 48 H 1.09007 * 109.46216 * 178.24006 * 25 18 17 49 49 H 1.09003 * 109.46502 * 58.28232 * 25 18 17 50 50 H 1.09011 * 109.50318 * 299.23670 * 26 25 18 51 51 H 1.09002 * 109.50612 * 179.12534 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5200 2.1200 1.1696 5 6 2.1208 1.5216 2.4430 6 6 1.6087 2.2761 3.6428 7 1 0.9228 3.0998 3.5103 8 6 2.0148 1.9141 4.9098 9 7 1.5675 2.5722 5.9567 10 14 3.2005 0.4890 5.1389 11 1 4.5960 0.9958 5.1057 12 1 2.9422 -0.1644 6.4472 13 1 3.0060 -0.4975 4.0461 14 6 1.6577 2.0713 -1.2473 15 6 2.5101 1.5267 -2.3951 16 6 2.0702 2.1740 -3.7111 17 6 2.9659 1.6715 -4.8457 18 7 4.3643 2.0129 -4.5549 19 6 5.1893 1.6877 -5.6253 20 6 4.9151 2.2023 -6.8885 21 6 5.7472 1.8746 -7.9433 22 6 6.8240 1.0314 -7.7010 23 6 7.0340 0.5531 -6.4234 24 7 6.2260 0.8866 -5.4346 25 6 4.8235 1.3642 -3.3202 26 6 3.9832 1.8575 -2.1402 27 1 -0.3633 0.5136 -0.8902 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5142 0.8898 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8077 3.1683 1.0900 33 1 0.4334 2.0436 1.2098 34 1 1.8331 0.4732 2.5226 35 1 3.2074 1.5981 2.4028 36 1 1.8530 2.3173 6.8481 37 1 1.8359 3.1412 -1.1382 38 1 0.6034 1.8989 -1.4641 39 1 2.3858 0.4458 -2.4614 40 1 1.0343 1.9067 -3.9197 41 1 2.1579 3.2575 -3.6309 42 1 2.8672 0.5896 -4.9344 43 1 2.6644 2.1414 -5.7817 44 1 4.0659 2.8516 -7.0425 45 1 5.5613 2.2618 -8.9342 46 1 7.4899 0.7526 -8.5042 47 1 7.8702 -0.1024 -6.2306 48 1 5.8712 1.6110 -3.1483 49 1 4.7162 0.2837 -3.4160 50 1 4.1011 2.9362 -2.0352 51 1 4.3142 1.3642 -1.2263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174390364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:08 Heat of formation + Delta-G solvation = 42.561168 kcal Electronic energy + Delta-G solvation = -26757.327161 eV Core-core repulsion = 23270.378877 eV Total energy + Delta-G solvation = -3486.948284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.95676 -39.08745 -37.63121 -34.40790 -32.93160 -32.76877 -30.94775 -30.62967 -30.42645 -28.93547 -26.38301 -24.52883 -24.30611 -23.58663 -22.48422 -22.18281 -20.87064 -19.63875 -18.99393 -17.92357 -16.85515 -16.64472 -16.17791 -15.53865 -15.46572 -15.14409 -14.84360 -14.53953 -14.22106 -14.06145 -13.74326 -13.54461 -13.50023 -13.34313 -12.89139 -12.63715 -12.38261 -12.34594 -12.25283 -12.05592 -11.73668 -11.60949 -11.27659 -11.06901 -10.97240 -10.74015 -10.58386 -10.48623 -10.30250 -10.18434 -10.02214 -9.94015 -9.69591 -9.66974 -9.53610 -9.15462 -8.49367 -8.30740 -7.70795 -6.01236 -3.98813 0.86873 1.01817 3.23250 3.35381 3.42116 3.46932 3.61091 4.19605 4.32264 4.49256 4.55189 4.64562 4.74361 4.83062 4.85415 4.86784 4.97980 5.10245 5.25379 5.32978 5.35715 5.39149 5.41947 5.46533 5.54390 5.55705 5.62416 5.68328 5.72651 5.79395 5.87405 5.88476 5.92106 5.99285 6.06571 6.16678 6.19661 6.23510 6.25937 6.37718 6.46272 6.53638 6.63999 6.65855 6.84775 6.99058 7.23167 7.38828 7.66278 7.70629 7.77306 7.90367 8.56823 9.03283 9.61741 11.12173 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.002453 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.108116 B =11411.621184 C =12042.687699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.049 3.951 3 N -0.537 5.537 4 C 0.067 3.933 5 C -0.006 4.006 6 C -0.519 4.519 7 H 0.070 0.930 8 C 0.066 3.934 9 N -0.905 5.905 10 Si 0.881 3.119 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.265 1.265 14 C 0.056 3.944 15 C -0.083 4.083 16 C -0.113 4.113 17 C 0.064 3.936 18 N -0.476 5.476 19 C 0.317 3.683 20 C -0.191 4.191 21 C -0.055 4.055 22 C -0.209 4.209 23 C 0.126 3.874 24 N -0.520 5.520 25 C 0.068 3.932 26 C -0.106 4.106 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.015 0.985 35 H 0.019 0.981 36 H 0.262 0.738 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.131 0.869 47 H 0.154 0.846 48 H 0.083 0.917 49 H 0.046 0.954 50 H 0.067 0.933 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.491 -4.040 -29.745 30.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.079 4.079 3 N -0.260 5.260 4 C -0.060 4.060 5 C -0.044 4.044 6 C -0.558 4.558 7 H 0.088 0.912 8 C -0.135 4.135 9 N -0.544 5.544 10 Si 0.709 3.291 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.190 1.190 14 C -0.072 4.072 15 C -0.102 4.102 16 C -0.151 4.151 17 C -0.061 4.061 18 N -0.193 5.193 19 C 0.085 3.915 20 C -0.214 4.214 21 C -0.081 4.081 22 C -0.231 4.231 23 C -0.031 4.031 24 N -0.235 5.235 25 C -0.058 4.058 26 C -0.144 4.144 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.033 0.967 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.149 0.851 47 H 0.172 0.828 48 H 0.102 0.898 49 H 0.064 0.936 50 H 0.086 0.914 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.128 -3.843 -28.529 29.432 hybrid contribution -0.409 -1.004 -0.745 1.316 sum 5.719 -4.847 -29.274 30.219 Atomic orbital electron populations 1.22414 0.98837 1.01710 1.02210 1.22136 0.92602 0.91118 1.02066 1.62285 1.59452 1.02085 1.02148 1.22176 0.97127 0.97128 0.89538 1.19546 0.96453 0.96236 0.92164 1.21095 1.28195 1.16896 0.89582 0.91234 1.25001 0.96058 0.96445 0.95954 1.69918 1.45013 1.41047 0.98421 0.86750 0.81722 0.83305 0.77326 1.20263 1.21606 1.18981 1.22134 0.96544 0.98597 0.89915 1.21214 0.95828 0.99882 0.93322 1.21665 0.98051 1.01681 0.93745 1.22225 0.85210 0.99142 0.99550 1.59088 1.02638 1.55265 1.02324 1.19972 0.91749 0.89781 0.89965 1.21577 1.03061 1.04367 0.92405 1.21433 0.93018 0.94677 0.98951 1.21975 1.00337 1.02018 0.98738 1.22557 0.96318 0.95977 0.88291 1.67676 1.06497 1.13592 1.35719 1.22066 1.00098 0.96551 0.87106 1.21623 0.93440 1.02103 0.97200 0.93143 0.92816 0.91343 0.91834 0.90322 0.91799 0.95040 0.96669 0.96289 0.92802 0.91122 0.94781 0.91461 0.91095 0.90658 0.93811 0.90180 0.84740 0.84891 0.85056 0.82849 0.89816 0.93582 0.91420 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 9.26 37.16 0.34 -2.42 16 2 C 0.05 0.75 5.68 -3.82 -0.02 0.73 16 3 N -0.54 -8.80 4.13 -234.63 -0.97 -9.77 16 4 C 0.07 1.33 4.62 -3.83 -0.02 1.32 16 5 C -0.01 -0.15 3.96 -27.89 -0.11 -0.26 16 6 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 7 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 10 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 14 C 0.06 0.75 4.26 -3.83 -0.02 0.74 16 15 C -0.08 -0.95 2.26 -90.50 -0.20 -1.15 16 16 C -0.11 -1.06 5.38 -26.65 -0.14 -1.20 16 17 C 0.06 0.59 5.24 -3.83 -0.02 0.57 16 18 N -0.48 -5.28 4.68 -173.24 -0.81 -6.09 16 19 C 0.32 3.52 6.41 -155.02 -0.99 2.53 16 20 C -0.19 -1.69 9.18 -39.23 -0.36 -2.05 16 21 C -0.05 -0.40 10.17 -39.32 -0.40 -0.80 16 22 C -0.21 -1.51 10.10 -39.42 -0.40 -1.91 16 23 C 0.13 1.12 11.17 -17.57 -0.20 0.92 16 24 N -0.52 -6.03 8.68 -12.44 -0.11 -6.13 16 25 C 0.07 0.81 4.65 -3.84 -0.02 0.80 16 26 C -0.11 -1.31 5.22 -26.65 -0.14 -1.44 16 27 H 0.05 0.66 6.31 -51.93 -0.33 0.33 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.14 6.25 -51.93 -0.32 0.81 16 30 H 0.06 0.85 6.47 -51.93 -0.34 0.52 16 31 H 0.08 1.35 6.54 -51.93 -0.34 1.01 16 32 H 0.06 1.30 7.86 -51.93 -0.41 0.89 16 33 H 0.03 0.63 5.96 -51.93 -0.31 0.32 16 34 H 0.02 0.37 5.64 -51.93 -0.29 0.07 16 35 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.07 0.97 7.81 -51.93 -0.41 0.57 16 38 H 0.03 0.44 5.99 -51.93 -0.31 0.13 16 39 H 0.07 0.79 6.55 -51.93 -0.34 0.45 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.61 6.66 -51.93 -0.35 0.26 16 44 H 0.13 0.98 7.13 -52.48 -0.37 0.60 16 45 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 47 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 48 H 0.08 1.08 7.71 -51.93 -0.40 0.68 16 49 H 0.05 0.58 8.11 -51.93 -0.42 0.16 16 50 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 51 H 0.09 1.23 7.80 -51.93 -0.41 0.83 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -31.75 383.92 -11.83 -43.57 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -8.70 Total: -0.48 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -3.13 Total: -16.97 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -1.11 Total: -49.36 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.75 -11.83 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174390364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.133 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds