Wall clock time and date at job start Tue Mar 31 2020 12:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00195 * 2 1 4 4 H 1.48506 * 109.47151 * 270.00094 * 3 2 1 5 5 H 1.48496 * 109.47386 * 30.00160 * 3 2 1 6 6 H 1.48501 * 109.47117 * 150.00303 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00094 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47037 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47109 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54223 * 68.37540 * 11 10 9 13 13 O 1.42105 * 110.54462 * 291.62635 * 11 10 9 14 14 N 1.65601 * 104.45241 * 180.02562 * 11 10 9 15 15 C 1.34773 * 119.99952 * 64.99565 * 14 11 10 16 16 O 1.21511 * 120.00139 * 0.02562 * 15 14 11 17 17 C 1.48155 * 120.00113 * 179.97438 * 15 14 11 18 18 C 1.39868 * 120.91055 * 359.97438 * 17 15 14 19 19 C 1.38089 * 119.03342 * 180.02562 * 18 17 15 20 20 N 1.31859 * 120.91670 * 0.02562 * 19 18 17 21 21 C 1.31881 * 122.02854 * 359.72442 * 20 19 18 22 22 Cl 1.73596 * 119.57240 * 180.26797 * 21 20 19 23 23 C 1.38354 * 120.86159 * 0.54308 * 21 20 19 24 24 H 0.97007 * 119.99438 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46637 * 60.00262 * 9 7 2 26 26 H 1.08996 * 109.47207 * 300.00369 * 9 7 2 27 27 H 1.09001 * 109.47166 * 60.00030 * 10 9 7 28 28 H 1.08996 * 109.47392 * 300.00217 * 10 9 7 29 29 H 0.97003 * 119.99905 * 245.00097 * 14 11 10 30 30 H 1.07999 * 120.48989 * 359.97438 * 18 17 15 31 31 H 1.07997 * 119.54354 * 179.97438 * 19 18 17 32 32 H 1.08002 * 120.51107 * 179.75519 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 16 1.3380 -5.2330 -0.0013 12 8 0.6644 -5.4193 -1.2386 13 8 0.6635 -5.4200 1.2354 14 7 2.5201 -6.3928 -0.0005 15 6 3.3458 -6.5127 1.0579 16 8 3.2227 -5.7701 2.0117 17 6 4.4030 -7.5506 1.0588 18 6 4.5608 -8.4165 -0.0282 19 6 5.5586 -9.3702 0.0139 20 7 6.3557 -9.4710 1.0595 21 6 6.2449 -8.6722 2.1030 22 17 7.3333 -8.8569 3.4428 23 6 5.2689 -7.6925 2.1464 24 1 -0.4850 0.8402 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8717 -3.6044 0.8895 28 1 2.8718 -3.6044 -0.8904 29 1 2.6182 -6.9859 -0.7619 30 1 3.9111 -8.3411 -0.8877 31 1 5.6875 -10.0433 -0.8207 32 1 5.1808 -7.0440 3.0056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181286275.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:30 Heat of formation + Delta-G solvation = -81.047334 kcal Electronic energy + Delta-G solvation = -21374.338662 eV Core-core repulsion = 17681.299293 eV Total energy + Delta-G solvation = -3693.039369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.027 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26245 -39.70688 -37.11899 -36.84615 -35.77049 -34.92103 -33.96751 -33.18393 -31.60936 -31.25253 -25.95694 -25.62613 -24.15579 -22.19174 -21.71129 -19.75222 -19.09062 -17.86837 -17.13150 -16.60232 -16.47154 -16.33399 -16.03593 -15.32631 -15.17154 -14.81723 -14.68727 -14.61518 -14.56529 -13.54184 -12.63327 -12.58185 -12.52250 -12.23629 -11.90652 -11.84548 -11.77263 -11.75657 -11.17904 -11.10882 -11.05129 -10.91952 -10.59862 -10.46726 -10.41947 -10.22904 -9.78364 -9.60243 -9.25460 -8.53985 -6.16403 -4.22228 -0.05843 0.30820 0.32744 1.27768 2.06092 2.47119 3.08841 3.24478 3.30998 3.34071 3.56515 3.86955 3.92841 4.18360 4.25732 4.32988 4.34737 4.51190 4.59837 5.01321 5.02407 5.19053 5.28849 5.48586 5.61398 5.74491 6.31838 6.39476 7.04658 7.08371 7.22072 7.28232 7.76466 8.11205 8.80695 9.42741 10.94631 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.017635 B = 0.003145 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.370578 B = 8899.607473 C = 9888.686598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.573 4.573 11 S 2.562 3.438 12 O -0.948 6.948 13 O -0.933 6.933 14 N -1.053 6.053 15 C 0.582 3.418 16 O -0.469 6.469 17 C -0.077 4.077 18 C -0.135 4.135 19 C 0.119 3.881 20 N -0.460 5.460 21 C 0.171 3.829 22 Cl -0.017 7.017 23 C -0.093 4.093 24 H 0.266 0.734 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.428 0.572 30 H 0.153 0.847 31 H 0.177 0.823 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.481 -19.748 -0.501 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.081 0.919 9 C -0.010 4.010 10 C -0.708 4.708 11 S 2.663 3.337 12 O -0.939 6.939 13 O -0.923 6.923 14 N -0.813 5.813 15 C 0.367 3.633 16 O -0.339 6.339 17 C -0.090 4.090 18 C -0.155 4.155 19 C -0.037 4.037 20 N -0.171 5.171 21 C 0.007 3.993 22 Cl 0.011 6.989 23 C -0.115 4.115 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.150 0.850 28 H 0.142 0.858 29 H 0.264 0.736 30 H 0.170 0.830 31 H 0.194 0.806 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.024 -19.974 0.365 23.317 hybrid contribution 0.526 1.388 -0.405 1.538 sum 12.550 -18.587 -0.040 22.427 Atomic orbital electron populations 1.69955 1.06123 1.27306 1.49386 1.25064 0.95003 0.99582 0.94785 0.86436 0.79747 0.82685 0.78231 1.20442 1.20951 1.19693 1.20964 0.93116 0.89511 1.52428 0.91920 1.19009 0.92601 0.90244 0.99132 1.30342 1.13751 1.15799 1.10939 1.06925 0.74906 0.77252 0.74638 1.93605 1.70111 1.85228 1.44933 1.93612 1.69970 1.84269 1.44483 1.55445 1.48952 1.50602 1.26329 1.17920 0.80431 0.83318 0.81620 1.91020 1.68804 1.41957 1.32112 1.20244 0.96569 0.96867 0.95357 1.22520 0.99302 0.95093 0.98586 1.22740 0.89763 0.96166 0.95078 1.66944 1.25983 1.24199 1.00016 1.21583 0.92835 0.93754 0.91115 1.98438 1.62573 1.96978 1.40876 1.22074 0.92455 0.97309 0.99617 0.92453 0.94663 0.94485 0.84963 0.85841 0.73625 0.82979 0.80599 0.81767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 10 C -0.57 -10.78 5.82 37.16 0.22 -10.56 16 11 S 2.56 43.51 5.11 -107.50 -0.55 42.96 16 12 O -0.95 -17.51 18.08 -57.54 -1.04 -18.55 16 13 O -0.93 -19.41 17.03 -64.80 -1.10 -20.51 16 14 N -1.05 -12.03 5.56 30.60 0.17 -11.86 16 15 C 0.58 7.22 7.54 -12.19 -0.09 7.13 16 16 O -0.47 -7.58 14.54 -11.80 -0.17 -7.75 16 17 C -0.08 -0.73 5.91 -104.65 -0.62 -1.35 16 18 C -0.13 -0.83 9.61 -39.03 -0.38 -1.21 16 19 C 0.12 0.74 11.17 -17.59 -0.20 0.54 16 20 N -0.46 -4.16 10.31 -10.41 -0.11 -4.27 16 21 C 0.17 1.63 7.27 -17.49 -0.13 1.50 16 22 Cl -0.02 -0.15 29.10 -51.86 -1.51 -1.66 16 23 C -0.09 -0.90 9.45 -38.98 -0.37 -1.26 16 24 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.13 2.43 7.19 -51.92 -0.37 2.06 16 28 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 29 H 0.43 2.95 6.93 -34.47 -0.24 2.71 16 30 H 0.15 0.42 6.54 -52.49 -0.34 0.07 16 31 H 0.18 0.46 8.06 -52.49 -0.42 0.04 16 32 H 0.16 1.53 7.74 -52.49 -0.41 1.12 16 LS Contribution 317.14 15.07 4.78 4.78 Total: -1.00 -36.49 317.14 -8.52 -45.01 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -2.59 Total: -1.14 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.11 Total: -17.62 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.80 Total: -41.54 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -2.32 Total: -46.81 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 43.51 SS G_CDS: -0.55 Total: 42.96 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.51 Total: -1.66 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.49 -8.52 -45.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181286275.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.040 kcal (2) G-P(sol) polarization free energy of solvation -36.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds