Wall clock time and date at job start Tue Mar 31 2020 12:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00195 * 2 1 4 4 H 1.48506 * 109.47151 * 270.00094 * 3 2 1 5 5 H 1.48496 * 109.47386 * 30.00160 * 3 2 1 6 6 H 1.48501 * 109.47117 * 150.00303 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00094 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47037 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47109 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54223 * 68.37540 * 11 10 9 13 13 O 1.42105 * 110.54462 * 291.62635 * 11 10 9 14 14 N 1.65601 * 104.45241 * 180.02562 * 11 10 9 15 15 C 1.34773 * 119.99952 * 64.99565 * 14 11 10 16 16 O 1.21511 * 120.00139 * 0.02562 * 15 14 11 17 17 C 1.48155 * 120.00113 * 179.97438 * 15 14 11 18 18 C 1.39868 * 120.91055 * 359.97438 * 17 15 14 19 19 C 1.38089 * 119.03342 * 180.02562 * 18 17 15 20 20 N 1.31859 * 120.91670 * 0.02562 * 19 18 17 21 21 C 1.31881 * 122.02854 * 359.72442 * 20 19 18 22 22 Cl 1.73596 * 119.57240 * 180.26797 * 21 20 19 23 23 C 1.38354 * 120.86159 * 0.54308 * 21 20 19 24 24 H 0.97007 * 119.99438 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46637 * 60.00262 * 9 7 2 26 26 H 1.08996 * 109.47207 * 300.00369 * 9 7 2 27 27 H 1.09001 * 109.47166 * 60.00030 * 10 9 7 28 28 H 1.08996 * 109.47392 * 300.00217 * 10 9 7 29 29 H 0.97003 * 119.99905 * 245.00097 * 14 11 10 30 30 H 1.07999 * 120.48989 * 359.97438 * 18 17 15 31 31 H 1.07997 * 119.54354 * 179.97438 * 19 18 17 32 32 H 1.08002 * 120.51107 * 179.75519 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 16 1.3380 -5.2330 -0.0013 12 8 0.6644 -5.4193 -1.2386 13 8 0.6635 -5.4200 1.2354 14 7 2.5201 -6.3928 -0.0005 15 6 3.3458 -6.5127 1.0579 16 8 3.2227 -5.7701 2.0117 17 6 4.4030 -7.5506 1.0588 18 6 4.5608 -8.4165 -0.0282 19 6 5.5586 -9.3702 0.0139 20 7 6.3557 -9.4710 1.0595 21 6 6.2449 -8.6722 2.1030 22 17 7.3333 -8.8569 3.4428 23 6 5.2689 -7.6925 2.1464 24 1 -0.4850 0.8402 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8717 -3.6044 0.8895 28 1 2.8718 -3.6044 -0.8904 29 1 2.6182 -6.9859 -0.7619 30 1 3.9111 -8.3411 -0.8877 31 1 5.6875 -10.0433 -0.8207 32 1 5.1808 -7.0440 3.0056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181286275.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:30 Heat of formation + Delta-G solvation = -109.404511 kcal Electronic energy + Delta-G solvation = -21375.568321 eV Core-core repulsion = 17681.299293 eV Total energy + Delta-G solvation = -3694.269029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.027 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.07011 -40.58624 -38.35189 -37.76921 -37.28927 -36.06886 -35.88040 -33.89787 -33.18654 -32.21052 -27.67718 -26.68992 -24.76086 -23.70616 -22.98075 -20.94903 -20.08400 -19.28508 -18.48934 -17.80868 -17.44041 -17.30688 -16.96607 -16.57936 -16.55101 -16.47616 -15.71879 -15.49876 -15.20806 -15.14805 -14.49808 -13.91340 -13.77914 -13.41965 -13.30924 -13.15548 -12.95563 -12.88328 -12.85598 -12.44432 -12.38740 -12.29746 -12.11292 -11.97853 -11.74174 -11.30772 -11.11397 -10.89146 -10.65386 -10.18852 -8.27698 -6.41449 -1.10532 -0.76468 -0.27710 0.62689 1.12120 1.30948 1.40729 1.42620 1.53759 2.35831 2.43440 2.51869 2.69516 3.05843 3.08076 3.34882 3.55835 3.64591 3.65062 3.87088 3.96649 4.03770 4.41138 4.50087 4.67875 4.71111 5.21178 5.22634 5.24364 5.50303 5.66450 6.03250 6.14066 6.47108 6.71312 7.28653 8.84581 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.017635 B = 0.003145 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.370578 B = 8899.607473 C = 9888.686598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.022 3.978 10 C -0.579 4.579 11 S 2.601 3.399 12 O -0.961 6.961 13 O -0.974 6.974 14 N -1.029 6.029 15 C 0.585 3.415 16 O -0.511 6.511 17 C -0.090 4.090 18 C -0.113 4.113 19 C 0.127 3.873 20 N -0.475 5.475 21 C 0.159 3.841 22 Cl -0.023 7.023 23 C -0.104 4.104 24 H 0.268 0.732 25 H 0.018 0.982 26 H 0.006 0.994 27 H 0.135 0.865 28 H 0.155 0.845 29 H 0.451 0.549 30 H 0.194 0.806 31 H 0.220 0.780 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.269 -21.063 -2.299 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.092 0.908 9 C -0.017 4.017 10 C -0.712 4.712 11 S 2.700 3.300 12 O -0.951 6.951 13 O -0.964 6.964 14 N -0.796 5.796 15 C 0.373 3.627 16 O -0.384 6.384 17 C -0.103 4.103 18 C -0.133 4.133 19 C -0.030 4.030 20 N -0.187 5.187 21 C -0.004 4.004 22 Cl 0.006 6.994 23 C -0.126 4.126 24 H 0.077 0.923 25 H 0.036 0.964 26 H 0.024 0.976 27 H 0.153 0.847 28 H 0.173 0.827 29 H 0.293 0.707 30 H 0.211 0.789 31 H 0.236 0.764 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 13.829 -21.298 -1.458 25.436 hybrid contribution -0.006 1.646 0.095 1.649 sum 13.824 -19.652 -1.363 24.066 Atomic orbital electron populations 1.70092 1.07967 1.28396 1.50681 1.26087 0.95883 1.03782 0.94296 0.85315 0.78530 0.77671 0.78764 1.19226 1.20847 1.18518 1.21479 0.93953 0.90737 1.51809 0.90770 1.18841 0.93475 0.92595 0.96835 1.30249 1.12923 1.15313 1.12735 1.05442 0.74526 0.76729 0.73307 1.93584 1.70875 1.85397 1.45250 1.93565 1.71523 1.84816 1.46478 1.54780 1.47755 1.49713 1.27362 1.18371 0.80428 0.83232 0.80684 1.91012 1.69894 1.43802 1.33704 1.20008 0.96099 0.97285 0.96915 1.22983 0.99033 0.93056 0.98236 1.23505 0.88418 0.96104 0.95019 1.67002 1.26949 1.24233 1.00547 1.21546 0.93094 0.94220 0.91557 1.98430 1.62681 1.97007 1.41291 1.22042 0.93029 0.97647 0.99843 0.92302 0.96379 0.97574 0.84667 0.82672 0.70724 0.78921 0.76409 0.82580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.54 -29.86 9.11 25.60 0.23 -29.63 16 8 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 9 C 0.02 1.11 4.98 29.85 0.15 1.26 16 10 C -0.58 -21.64 5.82 71.98 0.42 -21.22 16 11 S 2.60 86.67 5.11 -56.49 -0.29 86.38 16 12 O -0.96 -34.29 18.08 -127.65 -2.31 -36.60 16 13 O -0.97 -41.06 17.03 -120.71 -2.06 -43.11 16 14 N -1.03 -21.11 5.56 -175.40 -0.98 -22.08 16 15 C 0.59 13.66 7.54 86.88 0.65 14.31 16 16 O -0.51 -16.59 14.54 12.65 0.18 -16.41 16 17 C -0.09 -1.50 5.91 -19.88 -0.12 -1.61 16 18 C -0.11 -0.91 9.61 22.63 0.22 -0.69 16 19 C 0.13 1.02 11.17 84.65 0.95 1.97 16 20 N -0.48 -7.39 10.31 -186.85 -1.93 -9.32 16 21 C 0.16 2.83 7.27 84.71 0.62 3.45 16 22 Cl -0.02 -0.40 29.10 -2.72 -0.08 -0.48 16 23 C -0.10 -1.93 9.45 22.66 0.21 -1.71 16 24 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 25 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.14 4.98 7.19 -2.39 -0.02 4.97 16 28 H 0.16 4.67 8.14 -2.39 -0.02 4.65 16 29 H 0.45 4.43 6.93 -96.74 -0.67 3.76 16 30 H 0.19 -0.13 6.54 -2.91 -0.02 -0.14 16 31 H 0.22 -0.15 8.06 -2.91 -0.02 -0.17 16 32 H 0.16 3.03 7.74 -2.91 -0.02 3.01 16 Total: -1.00 -82.09 317.14 -0.83 -82.92 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: 0.52 Total: 2.92 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 3.79 Total: -33.51 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -2.62 Total: -87.28 kcal Atomic # 8 Polarization: -91.94 SS G_CDS: -4.18 Total: -96.12 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 86.67 SS G_CDS: -0.29 Total: 86.38 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -82.09 -0.83 -82.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181286275.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.481 kcal (2) G-P(sol) polarization free energy of solvation -82.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds