Wall clock time and date at job start Tue Mar 31 2020 12:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.34966 * 116.99593 * 2 1 4 4 O 1.21703 * 120.00429 * 359.97438 * 3 2 1 5 5 C 1.41543 * 120.00078 * 179.97438 * 3 2 1 6 6 S 1.76180 * 126.12381 * 180.02562 * 5 3 2 7 7 C 1.70908 * 90.44493 * 179.97438 * 6 5 3 8 8 N 1.37789 * 124.71543 * 179.97438 * 7 6 5 9 9 C 1.47958 * 111.00063 * 179.97438 * 8 7 6 10 10 C 1.53927 * 86.18328 * 222.42158 * 9 8 7 11 11 O 1.42908 * 113.73409 * 269.25739 * 10 9 8 12 12 C 1.50696 * 113.73938 * 138.07856 * 10 9 8 13 13 H 1.08004 * 119.99656 * 5.17075 * 12 10 9 14 14 C 1.37877 * 120.00407 * 184.89337 * 12 10 9 15 15 N 1.31516 * 119.99824 * 7.08196 * 14 12 10 16 16 Si 1.86796 * 120.00096 * 187.07856 * 14 12 10 17 17 H 1.48496 * 109.47354 * 94.89655 * 16 14 12 18 18 H 1.48505 * 109.47498 * 214.90074 * 16 14 12 19 19 H 1.48506 * 109.47221 * 334.89879 * 16 14 12 20 20 C 1.47958 * 110.99916 * 80.63965 * 8 7 6 21 21 N 1.30253 * 110.56651 * 0.22673 * 7 6 5 22 22 C 1.30903 * 117.27805 * 359.56913 * 21 7 6 23 23 Cl 1.73592 * 123.02438 * 180.18981 * 22 21 7 24 24 H 1.09002 * 109.46939 * 179.97438 * 1 2 3 25 25 H 1.08987 * 109.47742 * 300.00293 * 1 2 3 26 26 H 1.09000 * 109.46730 * 60.01120 * 1 2 3 27 27 H 1.08994 * 113.75964 * 108.10031 * 9 8 7 28 28 H 1.09004 * 113.75648 * 336.73872 * 9 8 7 29 29 H 0.96698 * 114.00093 * 162.47043 * 11 10 9 30 30 H 0.96999 * 119.99445 * 180.02562 * 15 14 12 31 31 H 1.09005 * 113.75980 * 23.26664 * 20 8 7 32 32 H 1.09002 * 113.76320 * 251.90153 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2026 0.0000 4 8 1.3788 2.2233 -0.0005 5 6 3.4552 1.2768 0.0005 6 16 4.4178 2.7524 0.0013 7 6 5.8564 1.8297 0.0023 8 7 7.1284 2.3595 0.0028 9 6 8.1489 1.2882 0.0043 10 6 8.8984 2.1452 1.0402 11 8 9.8304 3.0617 0.4624 12 6 9.4861 1.3480 2.1760 13 1 9.4324 0.2694 2.1632 14 6 10.0975 1.9953 3.2288 15 7 10.0466 3.3068 3.3132 16 14 10.9980 1.0095 4.5352 17 1 12.4424 0.9429 4.1971 18 1 10.8285 1.6670 5.8560 19 1 10.4388 -0.3651 4.5912 20 6 7.5308 2.7712 1.3658 21 7 5.5832 0.5562 -0.0027 22 6 4.3198 0.2136 0.0013 23 17 3.7876 -1.4388 0.0004 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 8.6769 1.1833 -0.9434 28 1 7.7879 0.3383 0.3988 29 1 10.1025 3.7735 1.0576 30 1 10.4770 3.7621 4.0536 31 1 6.9891 2.2550 2.1584 32 1 7.5647 3.8516 1.5062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188550506.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:11 Heat of formation + Delta-G solvation = -39.299897 kcal Electronic energy + Delta-G solvation = -21864.121386 eV Core-core repulsion = 18172.892322 eV Total energy + Delta-G solvation = -3691.229065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.027 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86379 -40.39050 -38.63636 -36.68695 -36.55610 -34.54196 -32.34629 -31.17473 -28.77869 -27.33966 -25.75802 -25.66660 -23.63689 -22.43130 -20.34328 -18.97649 -18.69341 -17.90150 -17.11779 -16.66787 -16.64691 -15.62812 -15.51011 -15.25913 -14.96308 -14.43812 -13.96417 -13.94706 -13.31357 -13.04956 -12.50526 -12.33761 -12.15237 -12.08823 -11.62620 -11.50213 -11.22348 -11.05863 -10.98131 -10.91184 -10.85733 -10.51839 -10.39037 -9.98158 -9.70167 -9.59982 -9.25327 -8.81110 -8.63952 -8.05339 -6.41317 -4.48652 -0.06967 0.76798 1.18948 1.97668 2.09926 2.80657 2.92840 3.14965 3.23439 3.26569 4.06862 4.20222 4.52652 4.74037 4.82891 4.97790 5.05022 5.11944 5.40047 5.50982 5.71222 5.82721 5.97109 6.20410 6.36845 6.43464 6.55802 6.99369 7.29242 7.35231 7.60664 7.61748 7.84112 8.53936 9.16944 9.24166 10.66564 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.003756 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.884848 B = 7453.374839 C = 7919.885020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.336 6.336 3 C 0.555 3.445 4 O -0.514 6.514 5 C -0.353 4.353 6 S 0.290 5.710 7 C 0.244 3.756 8 N -0.416 5.416 9 C 0.031 3.969 10 C 0.249 3.751 11 O -0.563 6.563 12 C -0.538 4.538 13 H 0.071 0.929 14 C 0.077 3.923 15 N -0.892 5.892 16 Si 0.903 3.097 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.271 1.271 20 C 0.005 3.995 21 N -0.521 5.521 22 C 0.240 3.760 23 Cl 0.022 6.978 24 H 0.102 0.898 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.385 0.615 30 H 0.271 0.729 31 H 0.080 0.920 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.857 -4.106 -4.679 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.253 6.253 3 C 0.401 3.599 4 O -0.405 6.405 5 C -0.477 4.477 6 S 0.549 5.451 7 C -0.119 4.119 8 N -0.138 5.138 9 C -0.098 4.098 10 C 0.207 3.793 11 O -0.371 6.371 12 C -0.577 4.577 13 H 0.089 0.911 14 C -0.127 4.127 15 N -0.530 5.530 16 Si 0.730 3.270 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.122 4.122 21 N -0.243 5.243 22 C 0.067 3.933 23 Cl 0.051 6.949 24 H 0.120 0.880 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.123 0.877 29 H 0.235 0.765 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.888 -2.883 -5.618 15.256 hybrid contribution -0.095 -1.642 1.647 2.328 sum -13.983 -4.526 -3.971 15.224 Atomic orbital electron populations 1.22909 0.76941 1.03616 1.02419 1.86334 1.23018 1.31519 1.84382 1.17876 0.86627 0.82099 0.73256 1.90912 1.66756 1.35407 1.47445 1.23367 0.96367 0.97469 1.30528 1.84067 0.92630 1.03535 1.64890 1.26348 1.00948 0.90082 0.94558 1.65910 0.95251 1.25649 1.26953 1.24353 0.89334 0.94333 1.01735 1.19764 0.84355 0.86175 0.88972 1.86131 1.63538 1.43204 1.44269 1.21485 1.38396 0.93879 1.03893 0.91104 1.25032 0.94825 0.95126 0.97749 1.69673 1.43125 1.07576 1.32633 0.86396 0.80218 0.80226 0.80165 1.20219 1.21002 1.19544 1.25274 1.00487 1.02783 0.83623 1.66233 1.18535 1.16542 1.22970 1.21054 0.87835 0.88885 0.95544 1.98421 1.87764 1.12915 1.95829 0.88006 0.92097 0.92152 0.89365 0.87747 0.76457 0.91931 0.90205 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.45 101.05 1.06 1.37 16 2 O -0.34 -4.25 8.24 -41.22 -0.34 -4.59 16 3 C 0.56 8.33 7.72 31.99 0.25 8.58 16 4 O -0.51 -8.49 16.64 -19.42 -0.32 -8.81 16 5 C -0.35 -5.52 6.32 -38.76 -0.24 -5.76 16 6 S 0.29 4.44 22.95 -107.50 -2.47 1.98 16 7 C 0.24 4.33 6.34 -88.01 -0.56 3.77 16 8 N -0.42 -8.04 6.33 -179.00 -1.13 -9.18 16 9 C 0.03 0.64 7.11 -2.77 -0.02 0.62 16 10 C 0.25 5.72 1.25 -90.87 -0.11 5.61 16 11 O -0.56 -13.48 13.39 -35.23 -0.47 -13.95 16 12 C -0.54 -13.43 8.59 -34.44 -0.30 -13.73 16 13 H 0.07 1.77 7.82 -52.48 -0.41 1.36 16 14 C 0.08 1.90 5.38 -17.82 -0.10 1.80 16 15 N -0.89 -22.18 11.76 55.43 0.65 -21.53 16 16 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 C 0.01 0.11 7.29 -2.79 -0.02 0.09 16 21 N -0.52 -9.30 8.87 -11.82 -0.10 -9.41 16 22 C 0.24 3.86 7.41 -18.38 -0.14 3.73 16 23 Cl 0.02 0.31 27.10 -51.86 -1.41 -1.10 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.53 8.13 -51.94 -0.42 0.11 16 26 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 27 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 28 H 0.10 2.14 6.88 -51.93 -0.36 1.79 16 29 H 0.38 9.14 7.45 45.56 0.34 9.47 16 30 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 31 H 0.08 1.68 7.85 -51.93 -0.41 1.27 16 32 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -26.69 312.99 -8.16 -34.86 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -2.08 Total: 6.40 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.18 Total: 6.07 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: -0.59 Total: -40.11 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -1.13 Total: -27.35 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -2.47 Total: 1.98 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.41 Total: -1.10 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.69 -8.16 -34.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188550506.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.442 kcal (2) G-P(sol) polarization free energy of solvation -26.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds