Wall clock time and date at job start Tue Mar 31 2020 12:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.34966 * 116.99593 * 2 1 4 4 O 1.21703 * 120.00429 * 359.97438 * 3 2 1 5 5 C 1.41543 * 120.00078 * 179.97438 * 3 2 1 6 6 S 1.76180 * 126.12381 * 180.02562 * 5 3 2 7 7 C 1.70908 * 90.44493 * 179.97438 * 6 5 3 8 8 N 1.37789 * 124.71543 * 179.97438 * 7 6 5 9 9 C 1.47958 * 111.00063 * 179.97438 * 8 7 6 10 10 C 1.53927 * 86.18328 * 222.42158 * 9 8 7 11 11 O 1.42908 * 113.73409 * 269.25739 * 10 9 8 12 12 C 1.50696 * 113.73938 * 138.07856 * 10 9 8 13 13 H 1.08004 * 119.99656 * 5.17075 * 12 10 9 14 14 C 1.37877 * 120.00407 * 184.89337 * 12 10 9 15 15 N 1.31516 * 119.99824 * 7.08196 * 14 12 10 16 16 Si 1.86796 * 120.00096 * 187.07856 * 14 12 10 17 17 H 1.48496 * 109.47354 * 94.89655 * 16 14 12 18 18 H 1.48505 * 109.47498 * 214.90074 * 16 14 12 19 19 H 1.48506 * 109.47221 * 334.89879 * 16 14 12 20 20 C 1.47958 * 110.99916 * 80.63965 * 8 7 6 21 21 N 1.30253 * 110.56651 * 0.22673 * 7 6 5 22 22 C 1.30903 * 117.27805 * 359.56913 * 21 7 6 23 23 Cl 1.73592 * 123.02438 * 180.18981 * 22 21 7 24 24 H 1.09002 * 109.46939 * 179.97438 * 1 2 3 25 25 H 1.08987 * 109.47742 * 300.00293 * 1 2 3 26 26 H 1.09000 * 109.46730 * 60.01120 * 1 2 3 27 27 H 1.08994 * 113.75964 * 108.10031 * 9 8 7 28 28 H 1.09004 * 113.75648 * 336.73872 * 9 8 7 29 29 H 0.96698 * 114.00093 * 162.47043 * 11 10 9 30 30 H 0.96999 * 119.99445 * 180.02562 * 15 14 12 31 31 H 1.09005 * 113.75980 * 23.26664 * 20 8 7 32 32 H 1.09002 * 113.76320 * 251.90153 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2026 0.0000 4 8 1.3788 2.2233 -0.0005 5 6 3.4552 1.2768 0.0005 6 16 4.4178 2.7524 0.0013 7 6 5.8564 1.8297 0.0023 8 7 7.1284 2.3595 0.0028 9 6 8.1489 1.2882 0.0043 10 6 8.8984 2.1452 1.0402 11 8 9.8304 3.0617 0.4624 12 6 9.4861 1.3480 2.1760 13 1 9.4324 0.2694 2.1632 14 6 10.0975 1.9953 3.2288 15 7 10.0466 3.3068 3.3132 16 14 10.9980 1.0095 4.5352 17 1 12.4424 0.9429 4.1971 18 1 10.8285 1.6670 5.8560 19 1 10.4388 -0.3651 4.5912 20 6 7.5308 2.7712 1.3658 21 7 5.5832 0.5562 -0.0027 22 6 4.3198 0.2136 0.0013 23 17 3.7876 -1.4388 0.0004 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 8.6769 1.1833 -0.9434 28 1 7.7879 0.3383 0.3988 29 1 10.1025 3.7735 1.0576 30 1 10.4770 3.7621 4.0536 31 1 6.9891 2.2550 2.1584 32 1 7.5647 3.8516 1.5062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188550506.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:10 Heat of formation + Delta-G solvation = -57.944859 kcal Electronic energy + Delta-G solvation = -21864.929893 eV Core-core repulsion = 18172.892322 eV Total energy + Delta-G solvation = -3692.037571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.027 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.22431 -41.62321 -40.05766 -37.86042 -37.67608 -36.26998 -34.23174 -32.48041 -30.28715 -28.30378 -27.41816 -27.24273 -25.10096 -23.65772 -21.69100 -20.56407 -20.06898 -19.32596 -18.68713 -17.77126 -17.75191 -17.18475 -17.11580 -16.72600 -16.34868 -16.06006 -15.48306 -15.02251 -14.64585 -14.33606 -14.21312 -13.71477 -13.45726 -13.33607 -13.05537 -12.99948 -12.79756 -12.71513 -12.31198 -12.20297 -12.18988 -12.04824 -11.77957 -11.48195 -11.16861 -10.99371 -10.75362 -10.64025 -10.30046 -9.55601 -8.27464 -6.40848 -1.36255 -0.48200 -0.07650 0.73362 0.82839 1.42809 1.47370 1.55213 1.58514 1.87132 2.38178 2.65652 2.96442 3.16245 3.46708 3.79221 3.94643 4.05980 4.21693 4.32466 4.36298 4.36827 4.73418 4.75636 4.81495 4.89524 5.17185 5.23802 5.70008 5.74019 5.99155 6.04519 6.50324 6.62432 7.30047 7.34741 8.79065 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.003756 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.884848 B = 7453.374839 C = 7919.885020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.336 6.336 3 C 0.558 3.442 4 O -0.531 6.531 5 C -0.352 4.352 6 S 0.343 5.657 7 C 0.216 3.784 8 N -0.413 5.413 9 C 0.039 3.961 10 C 0.230 3.770 11 O -0.571 6.571 12 C -0.561 4.561 13 H 0.062 0.938 14 C 0.040 3.960 15 N -0.906 5.906 16 Si 0.957 3.043 17 H -0.277 1.277 18 H -0.280 1.280 19 H -0.272 1.272 20 C 0.017 3.983 21 N -0.533 5.533 22 C 0.227 3.773 23 Cl 0.041 6.959 24 H 0.135 0.865 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.382 0.618 30 H 0.273 0.727 31 H 0.072 0.928 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.340 -4.719 -4.623 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.252 6.252 3 C 0.404 3.596 4 O -0.424 6.424 5 C -0.477 4.477 6 S 0.602 5.398 7 C -0.147 4.147 8 N -0.134 5.134 9 C -0.090 4.090 10 C 0.188 3.812 11 O -0.379 6.379 12 C -0.599 4.599 13 H 0.080 0.920 14 C -0.162 4.162 15 N -0.544 5.544 16 Si 0.782 3.218 17 H -0.202 1.202 18 H -0.206 1.206 19 H -0.196 1.196 20 C -0.110 4.110 21 N -0.255 5.255 22 C 0.055 3.945 23 Cl 0.070 6.930 24 H 0.153 0.847 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.232 0.768 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.394 -3.517 -5.575 16.746 hybrid contribution 0.178 -1.518 1.597 2.210 sum -15.216 -5.034 -3.978 16.514 Atomic orbital electron populations 1.23285 0.74717 1.05969 1.02751 1.86329 1.25146 1.30054 1.83634 1.17814 0.86303 0.82593 0.72906 1.90906 1.67031 1.36131 1.48319 1.23669 0.97075 0.97714 1.29241 1.83889 0.90579 1.02380 1.62947 1.26269 1.01065 0.90848 0.96518 1.65847 0.96034 1.25304 1.26199 1.24174 0.89508 0.94248 1.01064 1.19951 0.84978 0.86694 0.89528 1.86114 1.64142 1.43278 1.44370 1.21704 1.39370 0.93797 1.04981 0.91954 1.25624 0.95345 0.96003 0.99271 1.69727 1.43351 1.08259 1.33091 0.85563 0.78977 0.78983 0.78229 1.20230 1.20569 1.19617 1.24928 0.99221 1.02382 0.84498 1.66186 1.19653 1.16938 1.22741 1.21160 0.87308 0.90002 0.96022 1.98421 1.87463 1.11399 1.95730 0.84675 0.91870 0.91741 0.89146 0.88050 0.76783 0.91745 0.90952 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.45 113.37 1.18 1.58 16 2 O -0.34 -7.70 8.24 -58.84 -0.48 -8.18 16 3 C 0.56 15.63 7.72 68.64 0.53 16.16 16 4 O -0.53 -16.53 16.64 19.17 0.32 -16.21 16 5 C -0.35 -10.44 6.32 22.80 0.14 -10.30 16 6 S 0.34 10.00 22.95 -56.49 -1.30 8.71 16 7 C 0.22 7.50 6.34 179.44 1.14 8.64 16 8 N -0.41 -15.84 6.33 -723.43 -4.58 -20.42 16 9 C 0.04 1.63 7.11 86.40 0.61 2.24 16 10 C 0.23 10.66 1.25 -10.91 -0.01 10.65 16 11 O -0.57 -27.66 13.39 -148.98 -2.00 -29.66 16 12 C -0.56 -28.24 8.59 25.60 0.22 -28.02 16 13 H 0.06 3.16 7.82 -2.91 -0.02 3.13 16 14 C 0.04 1.97 5.38 84.65 0.46 2.43 16 15 N -0.91 -45.09 11.76 21.45 0.25 -44.84 16 16 Si 0.96 40.00 29.54 68.60 2.03 42.03 16 17 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 C 0.02 0.72 7.29 86.39 0.63 1.35 16 21 N -0.53 -18.61 8.87 -191.32 -1.70 -20.31 16 22 C 0.23 7.02 7.41 84.55 0.63 7.65 16 23 Cl 0.04 1.07 27.10 -2.72 -0.07 1.00 16 24 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 26 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 27 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 28 H 0.10 4.20 6.88 -2.39 -0.02 4.19 16 29 H 0.38 18.45 7.45 -74.06 -0.55 17.90 16 30 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 31 H 0.07 3.07 7.85 -2.38 -0.02 3.05 16 32 H 0.09 3.83 8.14 -2.39 -0.02 3.81 16 Total: -1.00 -55.45 312.99 -1.35 -56.81 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.64 Total: 18.71 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 5.53 Total: 12.37 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -6.02 Total: -85.57 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -2.16 Total: -54.05 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Atomic # 16 Polarization: 10.00 SS G_CDS: -1.30 Total: 8.71 kcal Atomic # 17 Polarization: 1.07 SS G_CDS: -0.07 Total: 1.00 kcal Total: -55.45 -1.35 -56.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188550506.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.139 kcal (2) G-P(sol) polarization free energy of solvation -55.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds