Wall clock time and date at job start Tue Mar 31 2020 11:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00172 * 2 1 4 4 H 1.48502 * 109.47105 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46835 * 300.00036 * 3 2 1 6 6 H 1.48495 * 109.47015 * 59.99957 * 3 2 1 7 7 C 1.37876 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00853 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99803 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47140 * 180.02562 * 9 7 2 11 11 S 1.81407 * 109.47145 * 179.97438 * 10 9 7 12 12 C 1.81391 * 103.00090 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.47354 * 179.97438 * 12 11 10 14 14 C 1.38229 * 120.00350 * 270.30772 * 13 12 11 15 15 C 1.38200 * 120.03265 * 180.27657 * 14 13 12 16 16 C 1.38363 * 120.04462 * 359.71155 * 15 14 13 17 17 Br 1.89099 * 120.00011 * 180.02562 * 16 15 14 18 18 C 1.38267 * 120.00253 * 359.97438 * 16 15 14 19 19 C 1.38446 * 120.00106 * 89.99900 * 13 12 11 20 20 F 1.35104 * 120.01964 * 0.02562 * 19 13 12 21 21 H 0.96996 * 119.99812 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.46944 * 59.99630 * 9 7 2 23 23 H 1.09004 * 109.46907 * 300.00293 * 9 7 2 24 24 H 1.08995 * 109.47726 * 59.99837 * 10 9 7 25 25 H 1.08999 * 109.46832 * 299.99610 * 10 9 7 26 26 H 1.09004 * 109.47589 * 60.00368 * 12 11 10 27 27 H 1.08993 * 109.47491 * 300.00039 * 12 11 10 28 28 H 1.07995 * 119.98223 * 359.96507 * 14 13 12 29 29 H 1.08002 * 119.97941 * 179.69676 * 15 14 13 30 30 H 1.07996 * 120.01999 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 16 1.3383 -5.2331 -0.0021 12 6 2.6649 -6.4702 -0.0025 13 6 2.0633 -7.8520 -0.0024 14 6 1.7818 -8.4832 1.1947 15 6 1.2354 -9.7526 1.1955 16 6 0.9640 -10.3908 -0.0018 17 35 0.2158 -12.1274 0.0007 18 6 1.2389 -9.7583 -1.2002 19 6 1.7866 -8.4866 -1.2013 20 9 2.0563 -7.8678 -2.3717 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5563 -0.8919 23 1 0.6240 -2.5575 0.8880 24 1 2.8713 -3.6048 0.8890 25 1 2.8725 -3.6039 -0.8910 26 1 3.2810 -6.3426 0.8876 27 1 3.2811 -6.3419 -0.8923 28 1 1.9936 -7.9862 2.1298 29 1 1.0204 -10.2470 2.1313 30 1 1.0268 -10.2559 -2.1349 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190872853.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:11 Heat of formation + Delta-G solvation = -37.220104 kcal Electronic energy + Delta-G solvation = -15365.928060 eV Core-core repulsion = 12440.441534 eV Total energy + Delta-G solvation = -2925.486525 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.06915 -39.43281 -33.76900 -33.68970 -31.02442 -30.91250 -30.79539 -26.86577 -25.21957 -23.27901 -22.00833 -20.97429 -17.66523 -16.92159 -16.55600 -16.27225 -16.03613 -15.29867 -14.54472 -14.49793 -14.01639 -13.88805 -13.57946 -13.41367 -13.01840 -12.97251 -12.22704 -11.94526 -11.59486 -11.40407 -11.05971 -11.00249 -10.68926 -10.58701 -10.23602 -9.73116 -9.69548 -9.23584 -9.09647 -8.74423 -8.44743 -7.22331 -6.08261 -4.13058 0.48726 0.81595 1.18547 2.12065 3.10095 3.24923 3.26841 3.34524 3.38106 3.97510 4.31859 4.34175 4.40075 4.60851 4.83740 5.10200 5.19751 5.27413 5.48358 5.57981 5.66310 5.78003 5.94607 5.96573 6.13240 6.41390 6.68379 7.53860 7.61842 7.87815 8.24557 8.92123 9.51071 11.02560 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.046523 B = 0.002312 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.703571 B =12107.369645 C =12237.682323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.060 4.060 11 S -0.269 6.269 12 C -0.060 4.060 13 C -0.079 4.079 14 C -0.069 4.069 15 C -0.100 4.100 16 C -0.066 4.066 17 Br -0.042 7.042 18 C -0.128 4.128 19 C 0.122 3.878 20 F -0.124 7.124 21 H 0.262 0.738 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 -26.549 1.276 26.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.208 4.208 11 S -0.039 6.039 12 C -0.207 4.207 13 C -0.081 4.081 14 C -0.090 4.090 15 C -0.120 4.120 16 C -0.147 4.147 17 Br 0.044 6.956 18 C -0.148 4.148 19 C 0.100 3.900 20 F -0.102 7.102 21 H 0.072 0.928 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.164 0.836 29 H 0.159 0.841 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.660 -27.201 1.225 27.279 hybrid contribution 1.893 1.645 -0.277 2.523 sum 3.553 -25.556 0.947 25.819 Atomic orbital electron populations 1.69980 1.06081 1.26804 1.50000 1.25019 0.94903 0.99341 0.95027 0.86460 0.79989 0.83405 0.77704 1.19689 1.20860 1.20873 1.21122 0.93033 0.90189 1.51752 0.92376 1.18911 0.93410 0.89214 0.98598 1.23741 1.01495 0.92272 1.03285 1.87207 1.15924 1.02701 1.98051 1.22198 0.99870 0.92528 1.06148 1.19574 1.00659 0.95466 0.92409 1.20989 0.96574 0.93771 0.97659 1.21143 0.98840 0.94983 0.97055 1.21510 1.04359 0.93405 0.95424 1.96749 1.82749 1.16822 1.99292 1.21003 1.01189 0.93989 0.98653 1.17342 1.00059 0.91258 0.81371 1.91553 1.91224 1.82220 1.45226 0.92794 0.95489 0.95503 0.91219 0.91232 0.88690 0.89009 0.83628 0.84118 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 10 C -0.06 -1.24 5.88 37.15 0.22 -1.02 16 11 S -0.27 -4.91 21.72 -107.50 -2.33 -7.24 16 12 C -0.06 -0.81 5.89 36.01 0.21 -0.60 16 13 C -0.08 -0.96 5.15 -104.55 -0.54 -1.50 16 14 C -0.07 -0.70 9.70 -39.60 -0.38 -1.08 16 15 C -0.10 -0.91 9.79 -39.55 -0.39 -1.30 16 16 C -0.07 -0.65 6.22 -39.52 -0.25 -0.90 16 17 Br -0.04 -0.36 33.70 -68.01 -2.29 -2.65 16 18 C -0.13 -1.35 9.77 -39.49 -0.39 -1.74 16 19 C 0.12 1.51 7.24 -39.42 -0.29 1.23 16 20 F -0.12 -1.72 16.48 2.25 0.04 -1.68 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.07 1.39 8.14 -51.92 -0.42 0.96 16 26 H 0.09 1.11 8.09 -51.92 -0.42 0.69 16 27 H 0.09 1.22 7.64 -51.93 -0.40 0.83 16 28 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 303.74 15.07 4.58 4.58 Total: -1.00 -29.87 303.74 -9.96 -39.83 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -3.32 Total: -3.95 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -2.35 Total: -19.32 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.74 Total: -25.85 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -4.91 SS G_CDS: -2.33 Total: -7.24 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -2.29 Total: -2.65 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.87 -9.96 -39.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190872853.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.606 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds