Wall clock time and date at job start Tue Mar 31 2020 12:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47278 * 2 1 4 4 O 1.45193 * 109.46935 * 239.99336 * 2 1 3 5 5 C 1.34231 * 117.00126 * 90.00449 * 4 2 1 6 6 O 1.20833 * 119.99644 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00640 * 179.71955 * 5 4 2 8 8 S 1.80997 * 109.47482 * 180.27685 * 7 5 4 9 9 C 1.76202 * 100.00062 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99653 * 0.02562 * 9 8 7 11 11 C 1.38802 * 119.99986 * 180.02562 * 9 8 7 12 12 N 1.31628 * 119.99948 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99883 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46656 * 90.00230 * 13 11 9 15 15 H 1.48494 * 109.46845 * 210.00108 * 13 11 9 16 16 H 1.48499 * 109.47153 * 330.00478 * 13 11 9 17 17 C 1.50704 * 109.46771 * 120.00163 * 2 1 3 18 18 C 1.38269 * 119.96718 * 264.99838 * 17 2 1 19 19 C 1.38190 * 120.05122 * 180.02562 * 18 17 2 20 20 C 1.38446 * 119.98751 * 359.97438 * 19 18 17 21 21 F 1.35099 * 120.02909 * 180.02562 * 20 19 18 22 22 C 1.38548 * 119.93785 * 0.02562 * 20 19 18 23 23 Cl 1.73600 * 120.02468 * 179.97438 * 22 20 19 24 24 C 1.38214 * 119.97477 * 84.72157 * 17 2 1 25 25 H 1.08999 * 109.47835 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47062 * 300.00770 * 1 2 3 27 27 H 1.09005 * 109.47320 * 59.99859 * 1 2 3 28 28 H 1.09000 * 109.47190 * 300.28291 * 7 5 4 29 29 H 1.09006 * 109.46468 * 60.27874 * 7 5 4 30 30 H 0.97003 * 119.99714 * 180.02562 * 12 11 9 31 31 H 1.08000 * 119.97437 * 359.97438 * 18 17 2 32 32 H 1.08001 * 120.01023 * 179.97438 * 19 18 17 33 33 H 1.07999 * 119.99076 * 0.02562 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6846 -1.1854 5 6 2.2171 0.0638 -2.2811 6 8 1.9983 1.2517 -2.2504 7 6 2.7247 -0.5763 -3.5474 8 16 2.9021 0.6860 -4.8324 9 6 3.4912 -0.3105 -6.1609 10 1 3.6334 -1.3715 -6.0181 11 6 3.7725 0.2683 -7.3907 12 7 4.2121 -0.4762 -8.3833 13 14 3.5258 2.1034 -7.6377 14 1 4.7787 2.8220 -7.2923 15 1 3.1776 2.3695 -9.0565 16 1 2.4254 2.5774 -6.7605 17 6 2.0322 -0.7105 1.2305 18 6 2.3609 0.0147 2.3610 19 6 2.8221 -0.6349 3.4901 20 6 2.9548 -2.0130 3.4898 21 9 3.4051 -2.6491 4.5934 22 6 2.6254 -2.7392 2.3568 23 17 2.7915 -4.4672 2.3538 24 6 2.1585 -2.0868 1.2300 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.6927 -1.0400 -3.3574 29 1 2.0169 -1.3359 -3.8795 30 1 4.4090 -0.0716 -9.2426 31 1 2.2578 1.0898 2.3612 32 1 3.0790 -0.0678 4.3725 33 1 1.8977 -2.6526 0.3478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194034821.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:43 Heat of formation + Delta-G solvation = -118.287024 kcal Electronic energy + Delta-G solvation = -20788.586817 eV Core-core repulsion = 17074.012651 eV Total energy + Delta-G solvation = -3714.574165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.028 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.34100 -40.65339 -39.45910 -37.01363 -36.42677 -33.18297 -32.52246 -31.42624 -29.94561 -29.21482 -25.72462 -24.48069 -23.71529 -22.02761 -20.65488 -18.30051 -18.10159 -17.55170 -16.91902 -16.65079 -16.20848 -16.08194 -15.54264 -15.06181 -14.52672 -14.37516 -14.18008 -14.09465 -13.75460 -13.37323 -13.23781 -13.09726 -12.85797 -12.32718 -12.23787 -11.92468 -11.79250 -11.44736 -11.36425 -11.17927 -11.08129 -10.77673 -10.75302 -10.26826 -9.91201 -9.43161 -9.08645 -9.04230 -8.66084 -7.06298 -6.36382 -4.11149 0.45400 0.62694 1.63533 2.30220 2.43529 2.90789 3.07246 3.26638 3.42202 3.47407 3.64232 4.07191 4.19123 4.24927 4.54441 4.63951 4.68869 4.81726 4.88311 5.01050 5.02431 5.11281 5.29648 5.47245 5.49619 5.54104 5.60112 5.61217 5.84207 5.90338 5.95816 6.19558 6.48617 7.86351 7.93476 8.35302 9.08533 10.72679 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.023226 B = 0.002684 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.238510 B =10429.174702 C =11119.331116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 H 0.101 0.899 4 O -0.351 6.351 5 C 0.481 3.519 6 O -0.487 6.487 7 C -0.100 4.100 8 S -0.139 6.139 9 C -0.523 4.523 10 H 0.092 0.908 11 C 0.097 3.903 12 N -0.876 5.876 13 Si 0.856 3.144 14 H -0.266 1.266 15 H -0.273 1.273 16 H -0.235 1.235 17 C -0.084 4.084 18 C -0.073 4.073 19 C -0.141 4.141 20 C 0.110 3.890 21 F -0.127 7.127 22 C -0.075 4.075 23 Cl -0.047 7.047 24 C -0.055 4.055 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.272 0.728 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.781 -2.136 24.592 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.072 3.928 3 H 0.119 0.881 4 O -0.270 6.270 5 C 0.322 3.678 6 O -0.373 6.373 7 C -0.248 4.248 8 S 0.087 5.913 9 C -0.671 4.671 10 H 0.110 0.890 11 C -0.112 4.112 12 N -0.513 5.513 13 Si 0.681 3.319 14 H -0.191 1.191 15 H -0.198 1.198 16 H -0.160 1.160 17 C -0.085 4.085 18 C -0.091 4.091 19 C -0.160 4.160 20 C 0.090 3.910 21 F -0.105 7.105 22 C -0.103 4.103 23 Cl -0.018 7.018 24 C -0.074 4.074 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.082 0.918 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.975 -0.859 24.516 25.248 hybrid contribution 0.403 -0.898 -0.162 0.998 sum -5.572 -1.758 24.354 25.045 Atomic orbital electron populations 1.22203 0.92796 1.03573 1.03666 1.21348 0.94808 0.96483 0.80147 0.88143 1.86572 1.77636 1.42629 1.20142 1.23293 0.74156 0.85905 0.84399 1.90661 1.46974 1.16229 1.83414 1.23023 1.05318 1.04114 0.92364 1.84794 1.87480 1.12870 1.06129 1.22257 1.51156 0.97327 0.96317 0.89027 1.24699 0.93201 0.98703 0.94578 1.69930 1.42366 1.36149 1.02809 0.86750 0.81016 0.84990 0.79165 1.19115 1.19778 1.15951 1.19690 1.00650 0.93209 0.94967 1.20950 0.96070 1.00829 0.91285 1.21079 1.02748 0.91611 1.00589 1.17467 1.00087 0.90590 0.82851 1.91547 1.86381 1.82071 1.50531 1.21013 1.07263 0.86439 0.95564 1.98402 1.96295 1.08429 1.98646 1.20915 0.95849 0.93975 0.96635 0.91216 0.90517 0.90842 0.87124 0.87054 0.91781 0.83873 0.83409 0.83005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 9.53 37.16 0.35 -1.16 16 2 C 0.13 1.38 2.77 -27.88 -0.08 1.30 16 3 H 0.10 1.12 7.06 -51.93 -0.37 0.76 16 4 O -0.35 -4.79 9.03 -39.26 -0.35 -5.15 16 5 C 0.48 8.11 7.95 36.00 0.29 8.40 16 6 O -0.49 -9.32 15.08 -18.76 -0.28 -9.61 16 7 C -0.10 -1.86 6.27 36.00 0.23 -1.64 16 8 S -0.14 -3.34 18.55 -107.50 -1.99 -5.34 16 9 C -0.52 -14.57 10.04 30.94 0.31 -14.26 16 10 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 11 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 12 N -0.88 -25.86 13.97 55.49 0.78 -25.08 16 13 Si 0.86 21.01 27.74 -169.99 -4.72 16.30 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.24 -5.71 6.74 56.52 0.38 -5.33 16 17 C -0.08 -0.79 5.01 -104.62 -0.52 -1.31 16 18 C -0.07 -0.55 9.68 -39.59 -0.38 -0.93 16 19 C -0.14 -1.05 10.03 -39.52 -0.40 -1.45 16 20 C 0.11 1.04 7.28 -39.39 -0.29 0.76 16 21 F -0.13 -1.29 16.84 2.25 0.04 -1.25 16 22 C -0.08 -0.75 6.33 -39.44 -0.25 -1.00 16 23 Cl -0.05 -0.47 28.62 -51.86 -1.48 -1.96 16 24 C -0.06 -0.54 9.13 -39.56 -0.36 -0.90 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.11 1.93 8.14 -51.92 -0.42 1.51 16 29 H 0.11 1.92 8.14 -51.91 -0.42 1.50 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.15 1.47 7.63 -52.49 -0.40 1.07 16 LS Contribution 328.14 15.07 4.95 4.95 Total: -1.00 -31.08 328.14 -7.57 -38.66 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -3.30 Total: -1.97 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.20 Total: -9.54 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.78 Total: -25.08 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.64 Total: -14.76 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.72 Total: 16.30 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.99 Total: -5.34 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.48 Total: -1.96 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.08 -7.57 -38.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194034821.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.631 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds