Wall clock time and date at job start Tue Mar 31 2020 12:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47278 * 2 1 4 4 O 1.45193 * 109.46935 * 239.99336 * 2 1 3 5 5 C 1.34231 * 117.00126 * 90.00449 * 4 2 1 6 6 O 1.20833 * 119.99644 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00640 * 179.71955 * 5 4 2 8 8 S 1.80997 * 109.47482 * 180.27685 * 7 5 4 9 9 C 1.76202 * 100.00062 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99653 * 0.02562 * 9 8 7 11 11 C 1.38802 * 119.99986 * 180.02562 * 9 8 7 12 12 N 1.31628 * 119.99948 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99883 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46656 * 90.00230 * 13 11 9 15 15 H 1.48494 * 109.46845 * 210.00108 * 13 11 9 16 16 H 1.48499 * 109.47153 * 330.00478 * 13 11 9 17 17 C 1.50704 * 109.46771 * 120.00163 * 2 1 3 18 18 C 1.38269 * 119.96718 * 264.99838 * 17 2 1 19 19 C 1.38190 * 120.05122 * 180.02562 * 18 17 2 20 20 C 1.38446 * 119.98751 * 359.97438 * 19 18 17 21 21 F 1.35099 * 120.02909 * 180.02562 * 20 19 18 22 22 C 1.38548 * 119.93785 * 0.02562 * 20 19 18 23 23 Cl 1.73600 * 120.02468 * 179.97438 * 22 20 19 24 24 C 1.38214 * 119.97477 * 84.72157 * 17 2 1 25 25 H 1.08999 * 109.47835 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47062 * 300.00770 * 1 2 3 27 27 H 1.09005 * 109.47320 * 59.99859 * 1 2 3 28 28 H 1.09000 * 109.47190 * 300.28291 * 7 5 4 29 29 H 1.09006 * 109.46468 * 60.27874 * 7 5 4 30 30 H 0.97003 * 119.99714 * 180.02562 * 12 11 9 31 31 H 1.08000 * 119.97437 * 359.97438 * 18 17 2 32 32 H 1.08001 * 120.01023 * 179.97438 * 19 18 17 33 33 H 1.07999 * 119.99076 * 0.02562 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6846 -1.1854 5 6 2.2171 0.0638 -2.2811 6 8 1.9983 1.2517 -2.2504 7 6 2.7247 -0.5763 -3.5474 8 16 2.9021 0.6860 -4.8324 9 6 3.4912 -0.3105 -6.1609 10 1 3.6334 -1.3715 -6.0181 11 6 3.7725 0.2683 -7.3907 12 7 4.2121 -0.4762 -8.3833 13 14 3.5258 2.1034 -7.6377 14 1 4.7787 2.8220 -7.2923 15 1 3.1776 2.3695 -9.0565 16 1 2.4254 2.5774 -6.7605 17 6 2.0322 -0.7105 1.2305 18 6 2.3609 0.0147 2.3610 19 6 2.8221 -0.6349 3.4901 20 6 2.9548 -2.0130 3.4898 21 9 3.4051 -2.6491 4.5934 22 6 2.6254 -2.7392 2.3568 23 17 2.7915 -4.4672 2.3538 24 6 2.1585 -2.0868 1.2300 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.6927 -1.0400 -3.3574 29 1 2.0169 -1.3359 -3.8795 30 1 4.4090 -0.0716 -9.2426 31 1 2.2578 1.0898 2.3612 32 1 3.0790 -0.0678 4.3725 33 1 1.8977 -2.6526 0.3478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194034821.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:42 Heat of formation + Delta-G solvation = -134.267064 kcal Electronic energy + Delta-G solvation = -20789.279763 eV Core-core repulsion = 17074.012651 eV Total energy + Delta-G solvation = -3715.267112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.028 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.07671 -41.78288 -40.30211 -37.91393 -37.47275 -34.68751 -34.06649 -32.09075 -31.30252 -30.03198 -27.89325 -25.30909 -24.41984 -22.99413 -21.70245 -19.97799 -19.01900 -18.80200 -17.92824 -17.51899 -17.39411 -17.12049 -16.87131 -16.48914 -15.98778 -15.41908 -15.14281 -14.95357 -14.89829 -14.58481 -14.28684 -14.10715 -13.98488 -13.54862 -13.35517 -13.12425 -13.01703 -12.73361 -12.61746 -12.56611 -12.22124 -11.97502 -11.89447 -11.78579 -11.59158 -11.17848 -10.62425 -10.10603 -9.75998 -9.05395 -8.52143 -6.25556 -0.25221 -0.03444 0.78604 0.90181 1.08461 1.32816 1.36783 1.50127 1.82219 2.23966 2.29259 2.64364 2.86213 2.95337 3.28249 3.55328 3.70349 3.90435 3.99640 4.06162 4.13544 4.20486 4.40442 4.42607 4.64387 4.69772 4.79695 4.81535 4.94628 5.13843 5.16452 5.37123 5.55397 5.69936 6.12036 6.63507 6.91821 8.60297 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.023226 B = 0.002684 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.238510 B =10429.174702 C =11119.331116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.124 3.876 3 H 0.101 0.899 4 O -0.345 6.345 5 C 0.494 3.506 6 O -0.511 6.511 7 C -0.093 4.093 8 S -0.157 6.157 9 C -0.533 4.533 10 H 0.064 0.936 11 C 0.046 3.954 12 N -0.916 5.916 13 Si 0.915 3.085 14 H -0.261 1.261 15 H -0.260 1.260 16 H -0.232 1.232 17 C -0.091 4.091 18 C -0.063 4.063 19 C -0.131 4.131 20 C 0.098 3.902 21 F -0.134 7.134 22 C -0.087 4.087 23 Cl -0.056 7.056 24 C -0.064 4.064 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.278 0.722 31 H 0.173 0.827 32 H 0.177 0.823 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 -0.590 26.533 27.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.069 3.931 3 H 0.119 0.881 4 O -0.263 6.263 5 C 0.336 3.664 6 O -0.399 6.399 7 C -0.241 4.241 8 S 0.069 5.931 9 C -0.680 4.680 10 H 0.082 0.918 11 C -0.160 4.160 12 N -0.554 5.554 13 Si 0.736 3.264 14 H -0.186 1.186 15 H -0.184 1.184 16 H -0.155 1.155 17 C -0.091 4.091 18 C -0.081 4.081 19 C -0.149 4.149 20 C 0.078 3.922 21 F -0.112 7.112 22 C -0.115 4.115 23 Cl -0.027 7.027 24 C -0.082 4.082 25 H 0.092 0.908 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.087 0.913 31 H 0.190 0.810 32 H 0.194 0.806 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.554 0.665 26.477 27.284 hybrid contribution 0.566 -1.488 -0.595 1.700 sum -5.988 -0.823 25.882 26.578 Atomic orbital electron populations 1.22214 0.91501 1.04036 1.04190 1.21651 0.95891 0.96391 0.79153 0.88082 1.86540 1.77222 1.42319 1.20210 1.22731 0.73671 0.85332 0.84635 1.90656 1.48212 1.17114 1.83919 1.22952 1.06730 1.02623 0.91814 1.84577 1.87223 1.14641 1.06654 1.22429 1.50881 0.96724 0.97993 0.91817 1.25585 0.92938 1.03071 0.94381 1.70018 1.43631 1.38196 1.03548 0.85868 0.81170 0.79656 0.79691 1.18559 1.18444 1.15529 1.19644 1.01517 0.92946 0.95014 1.21259 0.94420 1.02161 0.90228 1.21402 1.01280 0.90723 1.01509 1.17737 1.00475 0.91490 0.82490 1.91530 1.86538 1.82373 1.50786 1.21097 1.08179 0.86122 0.96101 1.98395 1.96397 1.09244 1.98683 1.20894 0.96432 0.94374 0.96547 0.90818 0.87863 0.92403 0.85926 0.85682 0.91271 0.80980 0.80550 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.53 71.98 0.69 -1.94 16 2 C 0.12 2.39 2.77 29.85 0.08 2.48 16 3 H 0.10 2.00 7.06 -2.39 -0.02 1.99 16 4 O -0.35 -8.86 9.03 -51.42 -0.46 -9.32 16 5 C 0.49 15.96 7.95 71.23 0.57 16.53 16 6 O -0.51 -18.84 15.08 21.94 0.33 -18.50 16 7 C -0.09 -3.37 6.27 71.23 0.45 -2.92 16 8 S -0.16 -7.48 18.55 -56.49 -1.05 -8.53 16 9 C -0.53 -30.03 10.04 67.95 0.68 -29.35 16 10 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 11 C 0.05 2.62 5.50 84.86 0.47 3.09 16 12 N -0.92 -54.79 13.97 21.65 0.30 -54.49 16 13 Si 0.91 43.13 27.74 68.60 1.90 45.03 16 14 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 15 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.23 -10.69 6.74 99.48 0.67 -10.02 16 17 C -0.09 -1.48 5.01 -19.86 -0.10 -1.58 16 18 C -0.06 -0.72 9.68 22.27 0.22 -0.50 16 19 C -0.13 -1.52 10.03 22.31 0.22 -1.30 16 20 C 0.10 1.68 7.28 22.39 0.16 1.84 16 21 F -0.13 -2.54 16.84 44.97 0.76 -1.79 16 22 C -0.09 -1.66 6.33 22.36 0.14 -1.52 16 23 Cl -0.06 -1.12 28.62 -2.72 -0.08 -1.20 16 24 C -0.06 -1.17 9.13 22.28 0.20 -0.97 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.12 4.17 8.14 -2.40 -0.02 4.15 16 29 H 0.13 4.21 8.14 -2.39 -0.02 4.19 16 30 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 32 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 33 H 0.15 2.76 7.63 -2.91 -0.02 2.74 16 Total: -1.00 -67.01 328.14 6.59 -60.42 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 1.11 Total: 4.52 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 3.78 Total: -16.14 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.30 Total: -54.49 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.13 Total: -27.83 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.76 Total: -1.79 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.90 Total: 45.03 kcal Atomic # 16 Polarization: -7.48 SS G_CDS: -1.05 Total: -8.53 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -67.01 6.59 -60.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194034821.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.843 kcal (2) G-P(sol) polarization free energy of solvation -67.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds