Wall clock time and date at job start Tue Mar 31 2020 12:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 111.00139 * 2 1 4 4 C 1.50700 * 109.47550 * 293.95660 * 3 2 1 5 5 H 1.08001 * 119.99391 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00281 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99689 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00195 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46955 * 60.00447 * 8 6 4 10 10 H 1.48501 * 109.47463 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47127 * 300.00737 * 8 6 4 12 12 C 1.39031 * 111.00288 * 123.95649 * 2 1 3 13 13 N 1.32404 * 119.71090 * 295.48470 * 12 2 1 14 14 C 1.31950 * 121.63467 * 179.97438 * 13 12 2 15 15 C 1.38059 * 120.86192 * 0.02562 * 14 13 12 16 16 C 1.38836 * 119.33648 * 359.97438 * 15 14 13 17 17 C 1.38389 * 118.49672 * 0.02562 * 16 15 14 18 18 I 2.09497 * 120.45424 * 180.02562 * 17 16 15 19 19 H 1.09000 * 109.46321 * 301.77076 * 1 2 3 20 20 H 1.08999 * 109.47259 * 61.77169 * 1 2 3 21 21 H 1.08996 * 109.46883 * 181.77400 * 1 2 3 22 22 H 1.09006 * 109.46785 * 53.95763 * 3 2 1 23 23 H 1.08996 * 109.47472 * 173.95249 * 3 2 1 24 24 H 0.97003 * 119.99280 * 179.97438 * 7 6 4 25 25 H 1.07995 * 119.56698 * 180.02562 * 14 13 12 26 26 H 1.08001 * 120.33140 * 180.02562 * 15 14 13 27 27 H 1.07997 * 120.75532 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0739 1.5116 -2.0484 6 6 2.0269 3.3495 -1.5284 7 7 2.7121 4.0019 -0.6148 8 14 1.5831 4.1870 -3.1380 9 1 0.1059 4.2233 -3.2863 10 1 2.1152 5.5734 -3.1380 11 1 2.1757 3.4298 -4.2698 12 6 1.9673 -0.7250 1.0766 13 7 1.7406 -0.3052 2.3117 14 6 2.1951 -0.9638 3.3609 15 6 2.9292 -2.1227 3.2061 16 6 3.1895 -2.5974 1.9276 17 6 2.7000 -1.8854 0.8466 18 53 3.0557 -2.5465 -1.1092 19 1 -0.3632 0.5411 0.8737 20 1 -0.3634 0.4861 -0.9054 21 1 -0.3633 -1.0271 0.0318 22 1 1.5612 1.9273 0.8310 23 1 3.0797 1.3444 0.1083 24 1 2.9867 4.9180 -0.7768 25 1 1.9900 -0.5913 4.3536 26 1 3.2967 -2.6551 4.0709 27 1 3.7610 -3.5017 1.7800 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269284666.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:04 Heat of formation + Delta-G solvation = 43.763104 kcal Electronic energy + Delta-G solvation = -13133.146742 eV Core-core repulsion = 10749.888535 eV Total energy + Delta-G solvation = -2383.258207 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 317.992 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.50623 -37.89303 -34.72019 -34.19790 -31.93628 -29.41521 -28.88386 -26.92493 -24.78912 -23.61994 -22.21760 -18.70256 -17.86086 -17.59097 -16.77374 -16.15931 -15.79432 -15.05105 -14.91248 -14.39187 -14.06951 -14.00267 -13.23332 -12.87889 -12.77422 -12.47235 -12.39938 -12.04330 -11.65474 -11.45852 -10.86613 -10.62089 -10.55847 -10.33123 -9.72144 -9.41844 -8.20214 -6.30639 -0.05289 0.20517 0.29155 1.42210 1.46061 1.53532 2.40105 2.68042 2.93737 3.13854 3.64570 3.89501 4.06474 4.19445 4.43027 4.53670 4.64292 4.91404 4.97622 5.02808 5.15539 5.19589 5.50141 5.67456 6.01142 6.04323 6.60051 6.82135 6.95545 7.38450 8.91563 Molecular weight = 317.99amu Principal moments of inertia in cm(-1) A = 0.018843 B = 0.007126 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.570722 B = 3928.589980 C = 4982.060153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.490 5.490 3 C 0.233 3.767 4 C -0.520 4.520 5 H 0.070 0.930 6 C 0.004 3.996 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.305 3.695 13 N -0.544 5.544 14 C 0.109 3.891 15 C -0.164 4.164 16 C -0.041 4.041 17 C -0.150 4.150 18 I -0.009 7.009 19 H 0.017 0.983 20 H 0.075 0.925 21 H 0.068 0.932 22 H -0.030 1.030 23 H -0.012 1.012 24 H 0.264 0.736 25 H 0.184 0.816 26 H 0.188 0.812 27 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.337 -18.359 4.303 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.213 5.213 3 C 0.108 3.892 4 C -0.558 4.558 5 H 0.088 0.912 6 C -0.194 4.194 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.190 1.190 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.076 3.924 13 N -0.258 5.258 14 C -0.049 4.049 15 C -0.185 4.185 16 C -0.069 4.069 17 C -0.294 4.294 18 I 0.138 6.862 19 H 0.035 0.965 20 H 0.094 0.906 21 H 0.086 0.914 22 H -0.012 1.012 23 H 0.006 0.994 24 H 0.073 0.927 25 H 0.201 0.799 26 H 0.205 0.795 27 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.311 -18.087 2.665 18.329 hybrid contribution -0.090 1.074 1.145 1.573 sum 1.221 -17.012 3.811 17.477 Atomic orbital electron populations 1.22097 0.85428 1.00679 1.01098 1.60413 1.09364 1.16751 1.34727 1.19166 0.92525 0.81780 0.95698 1.21357 1.35131 0.97413 1.01873 0.91189 1.25909 0.94878 0.97949 1.00687 1.70114 1.39287 1.11890 1.36334 0.85420 0.78971 0.77062 0.79091 1.18966 1.21027 1.19145 1.20186 0.92838 0.91361 0.88054 1.68008 1.23306 1.34096 1.00382 1.23364 0.92150 0.91758 0.97671 1.22571 0.99756 0.97570 0.98617 1.21892 0.95137 0.98931 0.90958 1.25441 1.05567 0.99307 0.99075 1.96570 1.94929 1.84739 1.09987 0.96464 0.90632 0.91356 1.01214 0.99368 0.92727 0.79879 0.79510 0.81210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.23 9.17 127.69 1.17 3.40 15 2 N -0.49 -22.30 3.85 -731.04 -2.82 -25.12 15 3 C 0.23 13.05 4.45 85.56 0.38 13.43 15 4 C -0.52 -29.86 8.54 25.60 0.22 -29.64 15 5 H 0.07 3.88 7.10 -2.91 -0.02 3.86 15 6 C 0.00 0.22 5.46 84.65 0.46 0.68 15 7 N -0.94 -57.80 13.29 21.45 0.28 -57.51 15 8 Si 0.97 44.84 29.54 68.60 2.03 46.87 15 9 H -0.26 -11.68 7.11 99.48 0.71 -10.97 15 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 12 C 0.31 12.33 5.27 133.06 0.70 13.03 15 13 N -0.54 -21.25 9.80 -193.22 -1.89 -23.15 15 14 C 0.11 2.99 11.17 84.63 0.95 3.94 15 15 C -0.16 -3.40 10.10 22.37 0.23 -3.17 15 16 C -0.04 -0.98 9.90 22.45 0.22 -0.75 15 17 C -0.15 -4.97 6.24 22.52 0.14 -4.83 15 18 I -0.01 -0.28 39.58 -18.82 -0.74 -1.03 15 19 H 0.02 0.73 8.05 -2.39 -0.02 0.71 15 20 H 0.07 3.18 6.91 -2.39 -0.02 3.16 15 21 H 0.07 2.43 8.11 -2.39 -0.02 2.42 15 22 H -0.03 -1.87 8.06 -2.38 -0.02 -1.89 15 23 H -0.01 -0.74 8.06 -2.39 -0.02 -0.76 15 24 H 0.26 15.34 8.31 -92.71 -0.77 14.57 15 25 H 0.18 3.70 8.06 -2.91 -0.02 3.67 15 26 H 0.19 2.00 8.06 -2.91 -0.02 1.98 15 27 H 0.17 2.92 8.06 -2.91 -0.02 2.90 15 Total: -1.00 -70.05 266.45 2.49 -67.56 By element: Atomic # 1 Polarization: -4.88 SS G_CDS: 1.17 Total: -3.72 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 4.47 Total: -3.91 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -4.42 Total: -105.77 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 53 Polarization: -0.28 SS G_CDS: -0.74 Total: -1.03 kcal Total: -70.05 2.49 -67.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269284666.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.322 kcal (2) G-P(sol) polarization free energy of solvation -70.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds