Wall clock time and date at job start Tue Mar 31 2020 11:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47289 * 2 1 4 4 N 1.46505 * 109.47235 * 180.02562 * 3 2 1 5 5 C 1.36771 * 120.00275 * 97.34648 * 4 3 2 6 6 H 1.07990 * 119.99604 * 219.96774 * 5 4 3 7 7 C 1.39081 * 119.99760 * 39.96314 * 5 4 3 8 8 N 1.31343 * 120.00359 * 17.30350 * 7 5 4 9 9 Si 1.86803 * 119.99927 * 197.30222 * 7 5 4 10 10 H 1.48503 * 109.46893 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47384 * 120.00239 * 9 7 5 12 12 H 1.48498 * 109.47206 * 240.00616 * 9 7 5 13 13 C 1.34778 * 119.99569 * 277.06782 * 4 3 2 14 14 O 1.21677 * 119.99989 * 5.22871 * 13 4 3 15 15 C 1.47053 * 119.99996 * 185.22488 * 13 4 3 16 16 N 1.30679 * 125.53648 * 6.76977 * 15 13 4 17 17 C 1.30741 * 115.88069 * 179.81809 * 16 15 13 18 18 Br 1.89101 * 122.11910 * 180.24559 * 17 16 15 19 19 C 1.34324 * 115.75937 * 0.47799 * 17 16 15 20 20 S 1.71060 * 109.11043 * 359.74595 * 19 17 16 21 21 H 1.08999 * 109.47434 * 300.00445 * 1 2 3 22 22 H 1.09002 * 109.46952 * 60.00404 * 1 2 3 23 23 H 1.09000 * 109.47427 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47434 * 239.99555 * 2 1 3 25 25 H 1.09008 * 109.46826 * 120.00040 * 2 1 3 26 26 H 1.08997 * 109.47458 * 59.99936 * 3 2 1 27 27 H 1.09002 * 109.46793 * 299.99692 * 3 2 1 28 28 H 0.96994 * 120.00070 * 179.97438 * 8 7 5 29 29 H 1.08006 * 125.43976 * 179.76881 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1884 1.5940 -1.1756 6 1 5.0791 1.0122 -1.3611 7 6 3.7362 2.4975 -2.1314 8 7 2.8806 3.4357 -1.7956 9 14 4.3459 2.3768 -3.8930 10 1 5.2965 1.2419 -4.0111 11 1 3.1930 2.1527 -4.8017 12 1 5.0328 3.6392 -4.2668 13 6 4.1793 1.2986 1.1575 14 8 3.5751 1.0738 2.1894 15 6 5.6453 1.4134 1.1739 16 7 6.3903 1.7735 0.1625 17 6 7.6774 1.8156 0.3882 18 35 8.9166 2.3200 -0.9482 19 6 8.0641 1.4731 1.6282 20 16 6.6825 1.0805 2.5573 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5139 0.8901 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9562 -0.8900 28 1 2.5655 4.0659 -2.4621 29 1 9.0843 1.4497 1.9820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275264102.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:45 Heat of formation + Delta-G solvation = 19.234962 kcal Electronic energy + Delta-G solvation = -16933.031329 eV Core-core repulsion = 14029.912841 eV Total energy + Delta-G solvation = -2903.118488 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.46225 -38.16718 -35.21709 -32.99596 -31.71573 -31.13636 -29.14106 -26.42769 -25.59898 -24.09509 -21.23060 -20.33094 -19.05659 -18.23897 -16.89135 -15.81748 -14.97094 -14.75017 -14.50657 -14.34225 -13.84317 -13.45424 -12.96535 -12.91295 -12.42413 -11.70289 -11.50419 -11.36286 -11.27366 -11.04749 -10.82380 -10.56824 -10.41444 -10.36057 -10.06993 -9.86535 -9.32526 -9.22388 -9.18698 -8.70399 -8.27994 -7.64127 -6.53958 -4.09854 0.74190 1.37342 1.75959 2.51194 2.79505 3.12857 3.20152 3.26090 4.02377 4.13955 4.50969 4.85314 5.19520 5.44185 5.63223 5.73597 5.77618 5.99400 6.26195 6.43641 6.48858 6.55805 6.73730 6.97288 7.24258 7.41724 7.72033 7.98363 8.32130 8.91250 9.23174 9.68179 10.47166 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.014284 B = 0.006878 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.734871 B = 4070.264645 C = 5763.950163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.119 3.881 4 N -0.387 5.387 5 C -0.293 4.293 6 H 0.111 0.889 7 C 0.047 3.953 8 N -0.847 5.847 9 Si 0.918 3.082 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.508 3.492 14 O -0.602 6.602 15 C 0.061 3.939 16 N -0.391 5.391 17 C 0.065 3.935 18 Br -0.007 7.007 19 C -0.282 4.282 20 S 0.192 5.808 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.274 0.726 29 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 -2.978 1.428 8.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C -0.005 4.005 4 N -0.101 5.101 5 C -0.425 4.425 6 H 0.129 0.871 7 C -0.162 4.162 8 N -0.483 5.483 9 Si 0.744 3.256 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.295 3.705 14 O -0.490 6.490 15 C -0.216 4.216 16 N -0.107 5.107 17 C -0.153 4.153 18 Br 0.076 6.924 19 C -0.427 4.427 20 S 0.449 5.551 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 7.386 -2.950 1.913 8.180 hybrid contribution 0.893 0.417 -1.388 1.702 sum 8.279 -2.532 0.525 8.674 Atomic orbital electron populations 1.21645 0.96228 1.00661 1.01500 1.21842 0.95025 0.98801 1.01840 1.21572 0.79941 0.95090 1.03847 1.43542 1.05352 1.56203 1.05048 1.20023 1.10581 1.20626 0.91247 0.87130 1.25508 0.96219 0.93482 1.00942 1.69893 1.30068 1.13337 1.34964 0.85978 0.78931 0.79164 0.81575 1.18555 1.20431 1.20260 1.17005 0.82898 0.86170 0.84380 1.90698 1.67672 1.58303 1.32313 1.28092 0.99521 1.03854 0.90136 1.67269 1.01108 1.13626 1.28733 1.21772 0.92517 1.08169 0.92833 1.96645 1.52005 1.91224 1.52557 1.26363 1.05959 1.12592 0.97803 1.83830 0.94575 1.59748 1.16973 0.92997 0.92934 0.93425 0.92166 0.92215 0.92317 0.87588 0.91596 0.80369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.91 37.15 0.37 -1.90 15 2 C -0.14 -2.67 6.18 -26.74 -0.17 -2.83 15 3 C 0.12 2.72 4.79 -4.04 -0.02 2.70 15 4 N -0.39 -9.67 2.52 -116.18 -0.29 -9.96 15 5 C -0.29 -7.41 7.64 -15.04 -0.11 -7.52 15 6 H 0.11 2.84 6.41 -52.49 -0.34 2.50 15 7 C 0.05 1.16 4.96 -17.45 -0.09 1.08 15 8 N -0.85 -21.69 11.49 55.50 0.64 -21.05 15 9 Si 0.92 19.62 29.59 -169.99 -5.03 14.59 15 10 H -0.26 -5.56 7.11 56.52 0.40 -5.16 15 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 13 C 0.51 12.64 7.55 -12.69 -0.10 12.55 15 14 O -0.60 -15.58 16.41 5.21 0.09 -15.50 15 15 C 0.06 1.35 7.17 -14.47 -0.10 1.25 15 16 N -0.39 -8.71 7.54 -9.94 -0.07 -8.78 15 17 C 0.06 1.21 7.10 -19.40 -0.14 1.08 15 18 Br -0.01 -0.11 33.97 -68.01 -2.31 -2.42 15 19 C -0.28 -4.49 10.89 29.35 0.32 -4.17 15 20 S 0.19 3.32 23.03 -107.50 -2.48 0.84 15 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.06 1.22 7.86 -51.92 -0.41 0.82 15 26 H 0.06 1.39 7.72 -51.93 -0.40 0.98 15 27 H 0.11 2.53 5.67 -51.93 -0.29 2.23 15 28 H 0.27 6.57 8.31 -40.82 -0.34 6.23 15 29 H 0.18 2.19 8.06 -52.48 -0.42 1.77 15 LS Contribution 288.67 15.07 4.35 4.35 Total: -1.00 -27.72 288.67 -7.83 -35.55 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -2.69 Total: 0.14 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.04 Total: 2.23 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.27 Total: -39.79 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.09 Total: -15.50 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -2.48 Total: 0.84 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -2.31 Total: -2.42 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.72 -7.83 -35.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275264102.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.787 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds