Wall clock time and date at job start Tue Mar 31 2020 11:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47289 * 2 1 4 4 N 1.46505 * 109.47235 * 180.02562 * 3 2 1 5 5 C 1.36771 * 120.00275 * 97.34648 * 4 3 2 6 6 H 1.07990 * 119.99604 * 219.96774 * 5 4 3 7 7 C 1.39081 * 119.99760 * 39.96314 * 5 4 3 8 8 N 1.31343 * 120.00359 * 17.30350 * 7 5 4 9 9 Si 1.86803 * 119.99927 * 197.30222 * 7 5 4 10 10 H 1.48503 * 109.46893 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47384 * 120.00239 * 9 7 5 12 12 H 1.48498 * 109.47206 * 240.00616 * 9 7 5 13 13 C 1.34778 * 119.99569 * 277.06782 * 4 3 2 14 14 O 1.21677 * 119.99989 * 5.22871 * 13 4 3 15 15 C 1.47053 * 119.99996 * 185.22488 * 13 4 3 16 16 N 1.30679 * 125.53648 * 6.76977 * 15 13 4 17 17 C 1.30741 * 115.88069 * 179.81809 * 16 15 13 18 18 Br 1.89101 * 122.11910 * 180.24559 * 17 16 15 19 19 C 1.34324 * 115.75937 * 0.47799 * 17 16 15 20 20 S 1.71060 * 109.11043 * 359.74595 * 19 17 16 21 21 H 1.08999 * 109.47434 * 300.00445 * 1 2 3 22 22 H 1.09002 * 109.46952 * 60.00404 * 1 2 3 23 23 H 1.09000 * 109.47427 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47434 * 239.99555 * 2 1 3 25 25 H 1.09008 * 109.46826 * 120.00040 * 2 1 3 26 26 H 1.08997 * 109.47458 * 59.99936 * 3 2 1 27 27 H 1.09002 * 109.46793 * 299.99692 * 3 2 1 28 28 H 0.96994 * 120.00070 * 179.97438 * 8 7 5 29 29 H 1.08006 * 125.43976 * 179.76881 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1884 1.5940 -1.1756 6 1 5.0791 1.0122 -1.3611 7 6 3.7362 2.4975 -2.1314 8 7 2.8806 3.4357 -1.7956 9 14 4.3459 2.3768 -3.8930 10 1 5.2965 1.2419 -4.0111 11 1 3.1930 2.1527 -4.8017 12 1 5.0328 3.6392 -4.2668 13 6 4.1793 1.2986 1.1575 14 8 3.5751 1.0738 2.1894 15 6 5.6453 1.4134 1.1739 16 7 6.3903 1.7735 0.1625 17 6 7.6774 1.8156 0.3882 18 35 8.9166 2.3200 -0.9482 19 6 8.0641 1.4731 1.6282 20 16 6.6825 1.0805 2.5573 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5139 0.8901 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9562 -0.8900 28 1 2.5655 4.0659 -2.4621 29 1 9.0843 1.4497 1.9820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275264102.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:45 Heat of formation + Delta-G solvation = 3.133239 kcal Electronic energy + Delta-G solvation = -16933.729553 eV Core-core repulsion = 14029.912841 eV Total energy + Delta-G solvation = -2903.816712 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.12271 -39.89394 -37.06861 -34.62041 -33.41412 -32.65871 -30.57619 -28.02817 -27.37681 -25.76464 -22.81475 -21.97441 -20.77879 -19.83530 -18.53734 -17.57779 -16.70912 -16.45864 -16.19668 -15.94680 -15.38338 -15.11917 -14.68659 -14.35376 -14.00984 -13.41378 -13.22808 -13.01190 -12.69098 -12.64990 -12.46215 -12.07573 -12.01844 -11.88200 -11.54914 -11.39462 -11.07876 -11.02809 -10.67617 -10.43634 -9.76355 -9.46779 -8.36170 -6.02356 -0.74919 -0.00921 0.21932 1.07967 1.20391 1.44498 1.46247 1.57811 2.27419 2.34110 2.82108 3.04308 3.62048 4.06432 4.15712 4.23496 4.31704 4.53757 4.65202 4.82126 4.96379 5.10087 5.23145 5.35106 5.50356 5.56525 5.90312 6.39272 6.50170 7.06328 7.38609 7.82851 8.67014 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.014284 B = 0.006878 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.734871 B = 4070.264645 C = 5763.950163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.121 3.879 4 N -0.405 5.405 5 C -0.310 4.310 6 H 0.101 0.899 7 C 0.012 3.988 8 N -0.884 5.884 9 Si 0.971 3.029 10 H -0.261 1.261 11 H -0.269 1.269 12 H -0.280 1.280 13 C 0.503 3.497 14 O -0.623 6.623 15 C 0.000 4.000 16 N -0.408 5.408 17 C 0.025 3.975 18 Br 0.014 6.986 19 C -0.242 4.242 20 S 0.275 5.725 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.275 0.725 29 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.734 -3.741 2.005 10.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C -0.002 4.002 4 N -0.120 5.120 5 C -0.440 4.440 6 H 0.119 0.881 7 C -0.192 4.192 8 N -0.521 5.521 9 Si 0.795 3.205 10 H -0.185 1.185 11 H -0.194 1.194 12 H -0.206 1.206 13 C 0.291 3.709 14 O -0.512 6.512 15 C -0.276 4.276 16 N -0.125 5.125 17 C -0.191 4.191 18 Br 0.096 6.904 19 C -0.386 4.386 20 S 0.530 5.470 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 9.296 -3.717 2.459 10.309 hybrid contribution 0.579 0.604 -1.300 1.546 sum 9.876 -3.113 1.159 10.419 Atomic orbital electron populations 1.21604 0.93258 1.02498 1.01914 1.21742 0.97552 0.96266 1.00922 1.21540 0.79671 0.96857 1.02153 1.43696 1.05936 1.57065 1.05266 1.19917 1.10836 1.21439 0.91815 0.88124 1.26128 0.96403 0.92975 1.03705 1.69972 1.31906 1.14398 1.35873 0.85192 0.78647 0.78685 0.77997 1.18470 1.19394 1.20590 1.17422 0.84463 0.84983 0.84065 1.90645 1.68835 1.58834 1.32910 1.27657 0.99135 1.07587 0.93179 1.67180 1.02795 1.12629 1.29920 1.22076 0.91881 1.10361 0.94812 1.96650 1.50296 1.91200 1.52233 1.27038 1.07860 1.07376 0.96326 1.83549 0.92891 1.56960 1.13590 0.92729 0.92396 0.90824 0.92443 0.93557 0.94175 0.88828 0.91542 0.75764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.91 71.98 0.71 -3.50 15 2 C -0.13 -5.04 6.18 30.59 0.19 -4.85 15 3 C 0.12 5.78 4.79 86.38 0.41 6.19 15 4 N -0.41 -20.99 2.52 -639.71 -1.61 -22.60 15 5 C -0.31 -16.14 7.64 84.13 0.64 -15.50 15 6 H 0.10 5.33 6.41 -2.92 -0.02 5.31 15 7 C 0.01 0.63 4.96 84.97 0.42 1.05 15 8 N -0.88 -46.90 11.49 21.69 0.25 -46.65 15 9 Si 0.97 40.87 29.59 68.60 2.03 42.90 15 10 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 11 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 12 H -0.28 -11.80 7.11 99.48 0.71 -11.09 15 13 C 0.50 25.64 7.55 86.55 0.65 26.30 15 14 O -0.62 -32.93 16.41 -4.27 -0.07 -33.00 15 15 C 0.00 0.00 7.17 87.18 0.63 0.63 15 16 N -0.41 -17.94 7.54 -185.35 -1.40 -19.34 15 17 C 0.03 0.90 7.10 83.96 0.60 1.49 15 18 Br 0.01 0.43 33.97 -20.37 -0.69 -0.27 15 19 C -0.24 -6.68 10.89 66.93 0.73 -5.95 15 20 S 0.27 8.66 23.03 -56.49 -1.30 7.36 15 21 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 22 H 0.06 1.74 8.14 -2.39 -0.02 1.72 15 23 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 24 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.05 1.94 7.86 -2.38 -0.02 1.92 15 26 H 0.04 2.00 7.72 -2.39 -0.02 1.98 15 27 H 0.09 4.69 5.67 -2.39 -0.01 4.67 15 28 H 0.27 13.64 8.31 -92.71 -0.77 12.87 15 29 H 0.23 4.08 8.06 -2.91 -0.02 4.05 15 Total: -1.00 -62.00 288.67 3.37 -58.63 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 1.18 Total: 7.11 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 4.99 Total: 5.85 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -2.76 Total: -88.59 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.07 Total: -33.00 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 8.66 SS G_CDS: -1.30 Total: 7.36 kcal Atomic # 35 Polarization: 0.43 SS G_CDS: -0.69 Total: -0.27 kcal Total: -62.00 3.37 -58.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275264102.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.763 kcal (2) G-P(sol) polarization free energy of solvation -62.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds