Wall clock time and date at job start Tue Mar 31 2020 11:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.46828 * 2 1 4 4 C 1.46499 * 120.00427 * 85.06781 * 3 2 1 5 5 C 1.50698 * 109.47184 * 96.02280 * 4 3 2 6 6 H 1.07994 * 120.00283 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99761 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00163 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99877 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47189 * 90.00310 * 9 7 5 11 11 H 1.48500 * 109.47311 * 210.00194 * 9 7 5 12 12 H 1.48499 * 109.47118 * 330.00054 * 9 7 5 13 13 C 1.34780 * 119.99690 * 264.78371 * 3 2 1 14 14 O 1.21622 * 120.00144 * 5.48824 * 13 3 2 15 15 C 1.47234 * 120.00210 * 185.48495 * 13 3 2 16 16 N 1.30589 * 125.53438 * 355.07743 * 15 13 3 17 17 C 1.30737 * 115.90179 * 179.78125 * 16 15 13 18 18 Br 1.89100 * 122.11820 * 180.24017 * 17 16 15 19 19 C 1.34311 * 115.76108 * 0.51381 * 17 16 15 20 20 S 1.71069 * 109.09032 * 359.72638 * 19 17 16 21 21 H 1.09007 * 109.46733 * 60.00389 * 1 2 3 22 22 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47040 * 300.00862 * 1 2 3 24 24 H 1.08991 * 109.47309 * 239.99528 * 2 1 3 25 25 H 1.09001 * 109.46308 * 119.99470 * 2 1 3 26 26 H 1.08999 * 109.47054 * 216.01973 * 4 3 2 27 27 H 1.08998 * 109.47057 * 336.02242 * 4 3 2 28 28 H 0.97003 * 120.00230 * 179.97438 * 8 7 5 29 29 H 1.08000 * 125.45323 * 179.74331 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1596 2.1083 1.2640 5 6 3.5844 2.0080 1.7446 6 1 4.3120 1.4581 1.1662 7 6 3.9593 2.6192 2.9223 8 7 3.0734 3.2893 3.6264 9 14 5.7252 2.4943 3.5184 10 1 6.5142 3.6263 2.9696 11 1 5.7516 2.5461 5.0023 12 1 6.3137 1.2112 3.0574 13 6 2.3430 1.9811 -1.1624 14 8 2.1372 1.4133 -2.2181 15 6 2.9467 3.3240 -1.1544 16 7 3.1310 4.0669 -0.0964 17 6 3.6897 5.2302 -0.3057 18 35 4.0443 6.4430 1.1012 19 6 3.9906 5.5117 -1.5840 20 16 3.5306 4.1922 -2.5707 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.9006 3.1560 1.1114 27 1 1.4933 1.6740 2.0093 28 1 3.3370 3.7190 4.4551 29 1 4.4497 6.4249 -1.9331 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275313017.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:47 Heat of formation + Delta-G solvation = 28.332706 kcal Electronic energy + Delta-G solvation = -17141.961195 eV Core-core repulsion = 14239.237215 eV Total energy + Delta-G solvation = -2902.723981 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.82041 -38.50063 -35.29974 -32.64421 -31.72188 -30.40881 -29.01512 -27.05599 -25.83333 -23.00182 -22.69676 -20.50047 -18.90689 -17.62063 -16.60586 -16.07382 -15.56205 -14.88627 -14.74183 -14.25160 -13.79744 -13.47085 -13.14418 -12.81729 -12.34242 -11.95758 -11.61429 -11.57170 -11.29987 -10.87804 -10.74897 -10.50842 -10.45889 -10.12204 -9.88009 -9.75998 -9.57715 -9.40135 -8.92207 -8.41467 -8.29036 -7.74553 -5.97233 -3.97856 0.53808 1.28667 1.53354 2.37924 2.63969 3.32022 3.38585 3.40842 3.71107 3.84753 4.46908 4.74608 5.22726 5.29354 5.39964 5.56198 5.75117 5.85097 5.89157 6.21096 6.36450 6.61081 6.78551 7.43444 7.63164 7.80616 7.92650 8.20856 8.27187 8.72422 9.01281 9.63572 11.10816 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.011957 B = 0.008842 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.090148 B = 3165.881026 C = 4789.273717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.564 5.564 4 C 0.229 3.771 5 C -0.513 4.513 6 H 0.050 0.950 7 C 0.080 3.920 8 N -0.878 5.878 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.591 3.409 14 O -0.565 6.565 15 C 0.014 3.986 16 N -0.335 5.335 17 C 0.063 3.937 18 Br 0.013 6.987 19 C -0.262 4.262 20 S 0.218 5.782 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.260 0.740 29 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.114 5.270 -7.913 9.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.293 5.293 4 C 0.110 3.890 5 C -0.553 4.553 6 H 0.068 0.932 7 C -0.123 4.123 8 N -0.517 5.517 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.374 3.626 14 O -0.446 6.446 15 C -0.264 4.264 16 N -0.051 5.051 17 C -0.155 4.155 18 Br 0.096 6.904 19 C -0.406 4.406 20 S 0.473 5.527 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.263 5.070 -8.288 9.720 hybrid contribution 1.362 0.503 1.124 1.836 sum 1.099 5.574 -7.165 9.144 Atomic orbital electron populations 1.22107 0.96358 1.01453 1.02245 1.21392 0.93870 0.82836 1.02869 1.48229 1.59400 1.13450 1.08235 1.19948 0.97467 0.93702 0.77932 1.21141 0.94644 1.33041 1.06436 0.93194 1.24651 0.96375 0.94892 0.96384 1.69890 1.33248 1.33568 1.14950 0.86847 0.86311 0.78508 0.77979 1.20411 1.21211 1.20210 1.16687 0.78682 0.82663 0.84527 1.90751 1.57599 1.65291 1.30970 1.27786 1.07388 1.01000 0.90235 1.67353 1.09271 1.01087 1.27370 1.21868 1.05880 0.95501 0.92204 1.96726 1.93809 1.52651 1.47204 1.26661 1.10283 1.06852 0.96820 1.83772 1.51802 1.05431 1.11693 0.92713 0.92163 0.92273 0.90656 0.90084 0.91068 0.95058 0.92998 0.79783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 10.24 37.16 0.38 -2.14 15 2 C 0.11 2.04 6.12 -4.04 -0.02 2.02 15 3 N -0.56 -12.07 2.47 -176.41 -0.44 -12.50 15 4 C 0.23 5.53 4.78 -5.20 -0.02 5.50 15 5 C -0.51 -13.47 7.94 -34.44 -0.27 -13.74 15 6 H 0.05 1.37 7.81 -52.49 -0.41 0.96 15 7 C 0.08 2.14 5.46 -17.82 -0.10 2.04 15 8 N -0.88 -24.07 13.29 55.43 0.74 -23.33 15 9 Si 0.88 21.18 29.54 -169.99 -5.02 16.15 15 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 15 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 13 C 0.59 12.64 7.60 -12.60 -0.10 12.54 15 14 O -0.56 -12.31 16.50 5.26 0.09 -12.23 15 15 C 0.01 0.29 7.11 -14.43 -0.10 0.19 15 16 N -0.34 -7.22 6.11 -9.90 -0.06 -7.28 15 17 C 0.06 1.19 7.10 -19.40 -0.14 1.05 15 18 Br 0.01 0.24 33.97 -68.01 -2.31 -2.07 15 19 C -0.26 -3.92 10.90 29.35 0.32 -3.60 15 20 S 0.22 3.33 23.03 -107.50 -2.48 0.86 15 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 15 24 H 0.08 1.32 7.35 -51.93 -0.38 0.94 15 25 H 0.08 1.42 8.11 -51.93 -0.42 1.00 15 26 H 0.07 1.84 5.67 -51.93 -0.29 1.54 15 27 H 0.03 0.79 8.03 -51.93 -0.42 0.37 15 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 29 H 0.18 2.08 8.06 -52.49 -0.42 1.65 15 LS Contribution 291.23 15.07 4.39 4.39 Total: -1.00 -29.02 291.23 -7.90 -36.91 By element: Atomic # 1 Polarization: -2.01 SS G_CDS: -2.75 Total: -4.76 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -0.06 Total: 3.85 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.24 Total: -43.11 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.48 Total: 0.86 kcal Atomic # 35 Polarization: 0.24 SS G_CDS: -2.31 Total: -2.07 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.02 -7.90 -36.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275313017.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.248 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds