Wall clock time and date at job start Tue Mar 31 2020 11:52:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 N 1.46495 * 109.46828 * 2 1
4 4 C 1.46499 * 120.00427 * 85.06781 * 3 2 1
5 5 C 1.50698 * 109.47184 * 96.02280 * 4 3 2
6 6 H 1.07994 * 120.00283 * 0.02562 * 5 4 3
7 7 C 1.37879 * 119.99761 * 179.97438 * 5 4 3
8 8 N 1.31511 * 120.00163 * 0.02562 * 7 5 4
9 9 Si 1.86803 * 119.99877 * 179.97438 * 7 5 4
10 10 H 1.48500 * 109.47189 * 90.00310 * 9 7 5
11 11 H 1.48500 * 109.47311 * 210.00194 * 9 7 5
12 12 H 1.48499 * 109.47118 * 330.00054 * 9 7 5
13 13 C 1.34780 * 119.99690 * 264.78371 * 3 2 1
14 14 O 1.21622 * 120.00144 * 5.48824 * 13 3 2
15 15 C 1.47234 * 120.00210 * 185.48495 * 13 3 2
16 16 N 1.30589 * 125.53438 * 355.07743 * 15 13 3
17 17 C 1.30737 * 115.90179 * 179.78125 * 16 15 13
18 18 Br 1.89100 * 122.11820 * 180.24017 * 17 16 15
19 19 C 1.34311 * 115.76108 * 0.51381 * 17 16 15
20 20 S 1.71069 * 109.09032 * 359.72638 * 19 17 16
21 21 H 1.09007 * 109.46733 * 60.00389 * 1 2 3
22 22 H 1.09001 * 109.47103 * 180.02562 * 1 2 3
23 23 H 1.08996 * 109.47040 * 300.00862 * 1 2 3
24 24 H 1.08991 * 109.47309 * 239.99528 * 2 1 3
25 25 H 1.09001 * 109.46308 * 119.99470 * 2 1 3
26 26 H 1.08999 * 109.47054 * 216.01973 * 4 3 2
27 27 H 1.08998 * 109.47057 * 336.02242 * 4 3 2
28 28 H 0.97003 * 120.00230 * 179.97438 * 8 7 5
29 29 H 1.08000 * 125.45323 * 179.74331 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1596 2.1083 1.2640
5 6 3.5844 2.0080 1.7446
6 1 4.3120 1.4581 1.1662
7 6 3.9593 2.6192 2.9223
8 7 3.0734 3.2893 3.6264
9 14 5.7252 2.4943 3.5184
10 1 6.5142 3.6263 2.9696
11 1 5.7516 2.5461 5.0023
12 1 6.3137 1.2112 3.0574
13 6 2.3430 1.9811 -1.1624
14 8 2.1372 1.4133 -2.2181
15 6 2.9467 3.3240 -1.1544
16 7 3.1310 4.0669 -0.0964
17 6 3.6897 5.2302 -0.3057
18 35 4.0443 6.4430 1.1012
19 6 3.9906 5.5117 -1.5840
20 16 3.5306 4.1922 -2.5707
21 1 -0.3633 0.5138 -0.8901
22 1 -0.3633 -1.0277 0.0005
23 1 -0.3633 0.5140 0.8899
24 1 1.8934 -0.5139 -0.8899
25 1 1.8933 -0.5138 0.8901
26 1 1.9006 3.1560 1.1114
27 1 1.4933 1.6740 2.0093
28 1 3.3370 3.7190 4.4551
29 1 4.4497 6.4249 -1.9331
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000275313017.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:52:47
Heat of formation + Delta-G solvation = 28.332706 kcal
Electronic energy + Delta-G solvation = -17141.961195 eV
Core-core repulsion = 14239.237215 eV
Total energy + Delta-G solvation = -2902.723981 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 317.978 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.82041 -38.50063 -35.29974 -32.64421 -31.72188 -30.40881 -29.01512 -27.05599
-25.83333 -23.00182 -22.69676 -20.50047 -18.90689 -17.62063 -16.60586 -16.07382
-15.56205 -14.88627 -14.74183 -14.25160 -13.79744 -13.47085 -13.14418 -12.81729
-12.34242 -11.95758 -11.61429 -11.57170 -11.29987 -10.87804 -10.74897 -10.50842
-10.45889 -10.12204 -9.88009 -9.75998 -9.57715 -9.40135 -8.92207 -8.41467
-8.29036 -7.74553 -5.97233 -3.97856 0.53808 1.28667 1.53354 2.37924
2.63969 3.32022 3.38585 3.40842 3.71107 3.84753 4.46908 4.74608
5.22726 5.29354 5.39964 5.56198 5.75117 5.85097 5.89157 6.21096
6.36450 6.61081 6.78551 7.43444 7.63164 7.80616 7.92650 8.20856
8.27187 8.72422 9.01281 9.63572 11.10816
Molecular weight = 317.98amu
Principal moments of inertia in cm(-1)
A = 0.011957 B = 0.008842 C = 0.005845
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2341.090148 B = 3165.881026 C = 4789.273717
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.114 3.886
3 N -0.564 5.564
4 C 0.229 3.771
5 C -0.513 4.513
6 H 0.050 0.950
7 C 0.080 3.920
8 N -0.878 5.878
9 Si 0.876 3.124
10 H -0.278 1.278
11 H -0.286 1.286
12 H -0.277 1.277
13 C 0.591 3.409
14 O -0.565 6.565
15 C 0.014 3.986
16 N -0.335 5.335
17 C 0.063 3.937
18 Br 0.013 6.987
19 C -0.262 4.262
20 S 0.218 5.782
21 H 0.054 0.946
22 H 0.059 0.941
23 H 0.058 0.942
24 H 0.075 0.925
25 H 0.081 0.919
26 H 0.072 0.928
27 H 0.031 0.969
28 H 0.260 0.740
29 H 0.185 0.815
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.114 5.270 -7.913 9.508
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.010 4.010
3 N -0.293 5.293
4 C 0.110 3.890
5 C -0.553 4.553
6 H 0.068 0.932
7 C -0.123 4.123
8 N -0.517 5.517
9 Si 0.704 3.296
10 H -0.204 1.204
11 H -0.212 1.212
12 H -0.202 1.202
13 C 0.374 3.626
14 O -0.446 6.446
15 C -0.264 4.264
16 N -0.051 5.051
17 C -0.155 4.155
18 Br 0.096 6.904
19 C -0.406 4.406
20 S 0.473 5.527
21 H 0.073 0.927
22 H 0.078 0.922
23 H 0.077 0.923
24 H 0.093 0.907
25 H 0.099 0.901
26 H 0.089 0.911
27 H 0.049 0.951
28 H 0.070 0.930
29 H 0.202 0.798
Dipole moment (debyes) X Y Z Total
from point charges -0.263 5.070 -8.288 9.720
hybrid contribution 1.362 0.503 1.124 1.836
sum 1.099 5.574 -7.165 9.144
Atomic orbital electron populations
1.22107 0.96358 1.01453 1.02245 1.21392 0.93870 0.82836 1.02869
1.48229 1.59400 1.13450 1.08235 1.19948 0.97467 0.93702 0.77932
1.21141 0.94644 1.33041 1.06436 0.93194 1.24651 0.96375 0.94892
0.96384 1.69890 1.33248 1.33568 1.14950 0.86847 0.86311 0.78508
0.77979 1.20411 1.21211 1.20210 1.16687 0.78682 0.82663 0.84527
1.90751 1.57599 1.65291 1.30970 1.27786 1.07388 1.01000 0.90235
1.67353 1.09271 1.01087 1.27370 1.21868 1.05880 0.95501 0.92204
1.96726 1.93809 1.52651 1.47204 1.26661 1.10283 1.06852 0.96820
1.83772 1.51802 1.05431 1.11693 0.92713 0.92163 0.92273 0.90656
0.90084 0.91068 0.95058 0.92998 0.79783
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.52 10.24 37.16 0.38 -2.14 15
2 C 0.11 2.04 6.12 -4.04 -0.02 2.02 15
3 N -0.56 -12.07 2.47 -176.41 -0.44 -12.50 15
4 C 0.23 5.53 4.78 -5.20 -0.02 5.50 15
5 C -0.51 -13.47 7.94 -34.44 -0.27 -13.74 15
6 H 0.05 1.37 7.81 -52.49 -0.41 0.96 15
7 C 0.08 2.14 5.46 -17.82 -0.10 2.04 15
8 N -0.88 -24.07 13.29 55.43 0.74 -23.33 15
9 Si 0.88 21.18 29.54 -169.99 -5.02 16.15 15
10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15
11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 15
12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15
13 C 0.59 12.64 7.60 -12.60 -0.10 12.54 15
14 O -0.56 -12.31 16.50 5.26 0.09 -12.23 15
15 C 0.01 0.29 7.11 -14.43 -0.10 0.19 15
16 N -0.34 -7.22 6.11 -9.90 -0.06 -7.28 15
17 C 0.06 1.19 7.10 -19.40 -0.14 1.05 15
18 Br 0.01 0.24 33.97 -68.01 -2.31 -2.07 15
19 C -0.26 -3.92 10.90 29.35 0.32 -3.60 15
20 S 0.22 3.33 23.03 -107.50 -2.48 0.86 15
21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15
22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15
23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 15
24 H 0.08 1.32 7.35 -51.93 -0.38 0.94 15
25 H 0.08 1.42 8.11 -51.93 -0.42 1.00 15
26 H 0.07 1.84 5.67 -51.93 -0.29 1.54 15
27 H 0.03 0.79 8.03 -51.93 -0.42 0.37 15
28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15
29 H 0.18 2.08 8.06 -52.49 -0.42 1.65 15
LS Contribution 291.23 15.07 4.39 4.39
Total: -1.00 -29.02 291.23 -7.90 -36.91
By element:
Atomic # 1 Polarization: -2.01 SS G_CDS: -2.75 Total: -4.76 kcal
Atomic # 6 Polarization: 3.91 SS G_CDS: -0.06 Total: 3.85 kcal
Atomic # 7 Polarization: -43.35 SS G_CDS: 0.24 Total: -43.11 kcal
Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.23 kcal
Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal
Atomic # 16 Polarization: 3.33 SS G_CDS: -2.48 Total: 0.86 kcal
Atomic # 35 Polarization: 0.24 SS G_CDS: -2.31 Total: -2.07 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -29.02 -7.90 -36.91 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000275313017.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.248 kcal
(2) G-P(sol) polarization free energy of solvation -29.017 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.231 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.333 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds