Wall clock time and date at job start Tue Mar 31 2020 11:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.70939 * 125.57166 * 2 1 4 4 C 1.70772 * 91.14067 * 179.97438 * 3 2 1 5 5 Br 1.89095 * 124.72323 * 180.02562 * 4 3 2 6 6 N 1.28746 * 110.54870 * 359.97438 * 4 3 2 7 7 C 1.33621 * 115.73046 * 359.97438 * 6 4 3 8 8 C 1.47250 * 123.13331 * 180.02562 * 7 6 4 9 9 O 1.21640 * 119.99768 * 173.93408 * 8 7 6 10 10 N 1.34781 * 120.00304 * 353.93769 * 8 7 6 11 11 C 1.46498 * 119.99802 * 3.61796 * 10 8 7 12 12 C 1.46501 * 119.99659 * 183.61400 * 10 8 7 13 13 C 1.50701 * 109.46995 * 90.00563 * 12 10 8 14 14 H 1.07997 * 119.99849 * 359.97438 * 13 12 10 15 15 C 1.37872 * 120.00080 * 179.97438 * 13 12 10 16 16 N 1.31520 * 120.00096 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00205 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46969 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47015 * 120.00142 * 17 15 13 20 20 H 1.48497 * 109.47341 * 239.99964 * 17 15 13 21 21 H 1.09004 * 109.46900 * 269.99685 * 1 2 3 22 22 H 1.08994 * 109.46965 * 29.99818 * 1 2 3 23 23 H 1.08996 * 109.46773 * 150.00485 * 1 2 3 24 24 H 1.09000 * 109.46914 * 84.05224 * 11 10 8 25 25 H 1.09000 * 109.46726 * 204.05007 * 11 10 8 26 26 H 1.09000 * 109.46698 * 324.04949 * 11 10 8 27 27 H 1.09008 * 109.46539 * 210.00122 * 12 10 8 28 28 H 1.08994 * 109.47490 * 329.99940 * 12 10 8 29 29 H 0.96993 * 120.00385 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5014 1.3904 0.0000 4 6 3.9100 0.4248 0.0008 5 35 5.6772 1.0977 0.0019 6 7 3.6011 -0.8250 0.0015 7 6 2.2933 -1.0994 0.0021 8 6 1.7588 -2.4714 0.0035 9 8 0.5620 -2.6577 0.1153 10 7 2.5956 -3.5209 -0.1189 11 6 4.0430 -3.3011 -0.1737 12 6 2.0577 -4.8813 -0.1971 13 6 1.8032 -5.2387 -1.6389 14 1 2.0200 -4.5238 -2.4188 15 6 1.2936 -6.4783 -1.9622 16 7 1.0300 -7.3491 -1.0125 17 14 0.9774 -6.9211 -3.7492 18 1 1.3550 -5.7767 -4.6169 19 1 1.7897 -8.1090 -4.1160 20 1 -0.4631 -7.2299 -3.9353 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5137 24 1 4.4368 -3.2201 0.8394 25 1 4.5187 -4.1394 -0.6826 26 1 4.2502 -2.3802 -0.7188 27 1 2.7765 -5.5812 0.2293 28 1 1.1231 -4.9352 0.3610 29 1 0.6712 -8.2210 -1.2399 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277812372.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:19 Heat of formation + Delta-G solvation = 23.015215 kcal Electronic energy + Delta-G solvation = -16643.478890 eV Core-core repulsion = 13740.524325 eV Total energy + Delta-G solvation = -2902.954564 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.48176 -38.04903 -35.02305 -33.00725 -32.59170 -31.30284 -28.39505 -27.07654 -25.51218 -24.55704 -23.05107 -20.97684 -18.82372 -18.08735 -16.53344 -15.83731 -15.60384 -15.47007 -14.89804 -14.15857 -13.93038 -13.39856 -13.13673 -13.07554 -12.57421 -12.27716 -12.06992 -11.72658 -11.67048 -11.20926 -11.11502 -10.91688 -10.83493 -10.59946 -10.16883 -9.73195 -9.64410 -9.42636 -9.03261 -8.85394 -8.43867 -7.60117 -6.04475 -4.09485 0.30625 0.49764 1.29834 1.36767 2.01959 3.30002 3.37084 3.41714 3.80901 3.96081 4.39420 4.47413 4.83242 5.02387 5.29305 5.56837 5.59845 5.75103 6.09310 6.24180 6.30193 6.62864 7.03292 7.19614 7.42588 7.54938 7.91933 8.22083 8.38060 8.84729 9.01862 9.55483 11.03546 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.021136 B = 0.004139 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.439911 B = 6762.770996 C = 7480.053894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.174 4.174 3 S 0.251 5.749 4 C -0.020 4.020 5 Br 0.050 6.950 6 N -0.392 5.392 7 C 0.015 3.985 8 C 0.578 3.422 9 O -0.532 6.532 10 N -0.578 5.578 11 C 0.078 3.922 12 C 0.243 3.757 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 H 0.086 0.914 22 H 0.068 0.932 23 H 0.112 0.888 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.915 21.634 3.213 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.299 4.299 3 S 0.503 5.497 4 C -0.376 4.376 5 Br 0.131 6.869 6 N -0.110 5.110 7 C -0.120 4.120 8 C 0.361 3.639 9 O -0.411 6.411 10 N -0.307 5.307 11 C -0.066 4.066 12 C 0.124 3.876 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.208 1.208 21 H 0.104 0.896 22 H 0.087 0.913 23 H 0.130 0.870 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.190 22.188 3.304 23.881 hybrid contribution -0.503 -1.486 -0.983 1.852 sum 7.687 20.702 2.321 22.205 Atomic orbital electron populations 1.20581 0.85007 1.04794 1.04085 1.25805 1.03991 0.95793 1.04291 1.82688 0.93818 1.08179 1.64982 1.28239 0.99315 0.95501 1.14508 1.96819 1.09660 1.82692 1.97737 1.67422 1.16899 1.15365 1.11290 1.20812 0.86293 0.97038 1.07894 1.16905 0.86078 0.82000 0.78889 1.90736 1.14327 1.84327 1.51702 1.48028 1.06468 1.08271 1.67977 1.22114 0.80583 1.02895 1.00987 1.19404 0.95561 0.74928 0.97660 1.21460 1.43092 0.99642 0.92306 0.92371 1.24933 0.95257 0.96153 0.97728 1.69944 1.44367 1.06942 1.32052 0.86429 0.77979 0.78267 0.84681 1.19803 1.20915 1.20837 0.89596 0.91305 0.86995 0.93906 0.91610 0.89166 0.94650 0.93545 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.57 36.01 0.34 -0.77 15 2 C -0.17 -2.53 6.40 -35.40 -0.23 -2.75 15 3 S 0.25 2.71 22.93 -107.50 -2.46 0.24 15 4 C -0.02 -0.27 7.84 51.47 0.40 0.14 15 5 Br 0.05 0.52 34.12 -68.01 -2.32 -1.80 15 6 N -0.39 -6.38 6.73 -10.75 -0.07 -6.45 15 7 C 0.02 0.27 6.50 -84.52 -0.55 -0.28 15 8 C 0.58 12.89 7.64 -12.60 -0.10 12.79 15 9 O -0.53 -13.10 13.74 5.24 0.07 -13.03 15 10 N -0.58 -13.35 2.86 -184.29 -0.53 -13.88 15 11 C 0.08 1.50 9.52 59.85 0.57 2.06 15 12 C 0.24 6.57 5.16 -5.19 -0.03 6.55 15 13 C -0.53 -15.22 9.39 -34.44 -0.32 -15.54 15 14 H 0.06 1.69 7.81 -52.49 -0.41 1.28 15 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 16 N -0.89 -26.75 13.29 55.43 0.74 -26.02 15 17 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 15 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 15 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 21 H 0.09 1.03 8.14 -51.93 -0.42 0.61 15 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.11 1.81 6.16 -51.93 -0.32 1.49 15 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.07 1.25 8.03 -51.93 -0.42 0.83 15 26 H 0.09 1.65 5.18 -51.93 -0.27 1.38 15 27 H 0.04 0.97 8.07 -51.92 -0.42 0.55 15 28 H 0.05 1.38 7.37 -51.93 -0.38 1.00 15 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 287.35 15.07 4.33 4.33 Total: -1.00 -32.13 287.35 -7.89 -40.02 By element: Atomic # 1 Polarization: -1.70 SS G_CDS: -2.62 Total: -4.32 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 0.00 Total: 3.87 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.14 Total: -46.35 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.07 Total: -13.03 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.46 Total: 0.24 kcal Atomic # 35 Polarization: 0.52 SS G_CDS: -2.32 Total: -1.80 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.13 -7.89 -40.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277812372.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.038 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds