Wall clock time and date at job start Tue Mar 31 2020 11:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.70939 * 125.57166 * 2 1 4 4 C 1.70772 * 91.14067 * 179.97438 * 3 2 1 5 5 Br 1.89095 * 124.72323 * 180.02562 * 4 3 2 6 6 N 1.28746 * 110.54870 * 359.97438 * 4 3 2 7 7 C 1.33621 * 115.73046 * 359.97438 * 6 4 3 8 8 C 1.47250 * 123.13331 * 180.02562 * 7 6 4 9 9 O 1.21640 * 119.99768 * 173.93408 * 8 7 6 10 10 N 1.34781 * 120.00304 * 353.93769 * 8 7 6 11 11 C 1.46498 * 119.99802 * 3.61796 * 10 8 7 12 12 C 1.46501 * 119.99659 * 183.61400 * 10 8 7 13 13 C 1.50701 * 109.46995 * 90.00563 * 12 10 8 14 14 H 1.07997 * 119.99849 * 359.97438 * 13 12 10 15 15 C 1.37872 * 120.00080 * 179.97438 * 13 12 10 16 16 N 1.31520 * 120.00096 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00205 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46969 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47015 * 120.00142 * 17 15 13 20 20 H 1.48497 * 109.47341 * 239.99964 * 17 15 13 21 21 H 1.09004 * 109.46900 * 269.99685 * 1 2 3 22 22 H 1.08994 * 109.46965 * 29.99818 * 1 2 3 23 23 H 1.08996 * 109.46773 * 150.00485 * 1 2 3 24 24 H 1.09000 * 109.46914 * 84.05224 * 11 10 8 25 25 H 1.09000 * 109.46726 * 204.05007 * 11 10 8 26 26 H 1.09000 * 109.46698 * 324.04949 * 11 10 8 27 27 H 1.09008 * 109.46539 * 210.00122 * 12 10 8 28 28 H 1.08994 * 109.47490 * 329.99940 * 12 10 8 29 29 H 0.96993 * 120.00385 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5014 1.3904 0.0000 4 6 3.9100 0.4248 0.0008 5 35 5.6772 1.0977 0.0019 6 7 3.6011 -0.8250 0.0015 7 6 2.2933 -1.0994 0.0021 8 6 1.7588 -2.4714 0.0035 9 8 0.5620 -2.6577 0.1153 10 7 2.5956 -3.5209 -0.1189 11 6 4.0430 -3.3011 -0.1737 12 6 2.0577 -4.8813 -0.1971 13 6 1.8032 -5.2387 -1.6389 14 1 2.0200 -4.5238 -2.4188 15 6 1.2936 -6.4783 -1.9622 16 7 1.0300 -7.3491 -1.0125 17 14 0.9774 -6.9211 -3.7492 18 1 1.3550 -5.7767 -4.6169 19 1 1.7897 -8.1090 -4.1160 20 1 -0.4631 -7.2299 -3.9353 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5137 24 1 4.4368 -3.2201 0.8394 25 1 4.5187 -4.1394 -0.6826 26 1 4.2502 -2.3802 -0.7188 27 1 2.7765 -5.5812 0.2293 28 1 1.1231 -4.9352 0.3610 29 1 0.6712 -8.2210 -1.2399 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277812372.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:18 Heat of formation + Delta-G solvation = 1.917854 kcal Electronic energy + Delta-G solvation = -16644.393740 eV Core-core repulsion = 13740.524325 eV Total energy + Delta-G solvation = -2903.869415 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.81289 -39.62515 -36.82482 -34.75134 -34.11623 -32.30619 -30.28402 -28.50448 -27.21734 -25.84343 -24.78188 -22.49730 -20.08965 -19.49396 -18.72923 -17.35850 -17.10733 -16.88834 -16.56579 -15.85885 -15.49853 -14.69676 -14.36646 -14.28292 -14.15157 -13.96334 -13.69390 -13.42030 -13.14101 -12.80627 -12.79888 -12.58180 -12.24392 -12.06873 -11.77921 -11.72426 -11.01965 -10.67810 -10.57185 -10.47708 -9.98341 -9.43950 -8.25212 -6.40919 -0.77608 -0.46615 0.27720 0.31056 0.71251 1.35694 1.37367 1.50074 2.17419 2.33970 2.41233 3.03729 3.14111 3.68365 3.82349 4.24832 4.50987 4.62349 4.71723 4.71933 4.94228 5.10775 5.16839 5.23559 5.52994 5.77419 6.00153 6.05201 6.61208 6.67914 7.17265 7.33785 8.82342 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.021136 B = 0.004139 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.439911 B = 6762.770996 C = 7480.053894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.184 4.184 3 S 0.377 5.623 4 C -0.041 4.041 5 Br 0.077 6.923 6 N -0.418 5.418 7 C -0.018 4.018 8 C 0.570 3.430 9 O -0.571 6.571 10 N -0.592 5.592 11 C 0.084 3.916 12 C 0.260 3.740 13 C -0.545 4.545 14 H 0.050 0.950 15 C 0.010 3.990 16 N -0.926 5.926 17 Si 0.971 3.029 18 H -0.269 1.269 19 H -0.268 1.268 20 H -0.277 1.277 21 H 0.095 0.905 22 H 0.108 0.892 23 H 0.074 0.926 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.024 0.976 28 H 0.007 0.993 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.685 24.358 2.207 25.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.310 4.310 3 S 0.631 5.369 4 C -0.395 4.395 5 Br 0.157 6.843 6 N -0.136 5.136 7 C -0.153 4.153 8 C 0.356 3.644 9 O -0.452 6.452 10 N -0.321 5.321 11 C -0.058 4.058 12 C 0.139 3.861 13 C -0.584 4.584 14 H 0.069 0.931 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.795 3.205 18 H -0.193 1.193 19 H -0.193 1.193 20 H -0.202 1.202 21 H 0.113 0.887 22 H 0.126 0.874 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.042 0.958 28 H 0.025 0.975 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.997 24.947 2.308 26.620 hybrid contribution -0.709 -2.141 -0.600 2.334 sum 8.287 22.806 1.708 24.325 Atomic orbital electron populations 1.20605 0.84355 1.04881 1.04679 1.26171 1.05167 0.97333 1.02297 1.82248 0.89706 1.03481 1.61512 1.28714 1.01781 0.95540 1.13510 1.96853 1.08085 1.81708 1.97624 1.67259 1.16195 1.17342 1.12815 1.20116 0.87830 0.95182 1.12204 1.17532 0.85628 0.83688 0.77552 1.90697 1.15876 1.85494 1.53091 1.48029 1.08190 1.07148 1.68757 1.22214 0.78286 1.03292 1.02025 1.18881 0.93586 0.77299 0.96371 1.21659 1.43855 1.00011 0.92832 0.93145 1.25867 0.94581 0.95856 1.02634 1.70056 1.44657 1.07443 1.34421 0.85316 0.78106 0.78342 0.78719 1.19338 1.19333 1.20232 0.88684 0.87383 0.90746 0.92544 0.92155 0.87738 0.95826 0.97476 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.15 9.57 71.24 0.68 -1.47 15 2 C -0.18 -5.05 6.40 24.98 0.16 -4.89 15 3 S 0.38 6.69 22.93 -56.49 -1.30 5.40 15 4 C -0.04 -0.96 7.84 130.69 1.03 0.06 15 5 Br 0.08 1.38 34.12 -20.37 -0.70 0.69 15 6 N -0.42 -13.13 6.73 -187.93 -1.27 -14.39 15 7 C -0.02 -0.64 6.50 40.53 0.26 -0.38 15 8 C 0.57 26.54 7.64 86.61 0.66 27.20 15 9 O -0.57 -29.80 13.74 -4.16 -0.06 -29.86 15 10 N -0.59 -28.64 2.86 -855.22 -2.44 -31.08 15 11 C 0.08 3.30 9.52 127.77 1.22 4.52 15 12 C 0.26 14.85 5.16 85.63 0.44 15.29 15 13 C -0.55 -32.69 9.39 25.60 0.24 -32.45 15 14 H 0.05 3.03 7.81 -2.91 -0.02 3.01 15 15 C 0.01 0.58 5.46 84.65 0.46 1.04 15 16 N -0.93 -56.86 13.29 21.45 0.28 -56.57 15 17 Si 0.97 45.71 29.54 68.60 2.03 47.73 15 18 H -0.27 -12.36 7.11 99.48 0.71 -11.66 15 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 21 H 0.09 2.18 8.14 -2.38 -0.02 2.16 15 22 H 0.11 1.76 8.14 -2.39 -0.02 1.74 15 23 H 0.07 2.49 6.16 -2.39 -0.01 2.47 15 24 H 0.06 2.01 8.14 -2.39 -0.02 1.99 15 25 H 0.06 2.36 8.03 -2.39 -0.02 2.34 15 26 H 0.10 3.82 5.18 -2.39 -0.01 3.81 15 27 H 0.02 1.38 8.07 -2.38 -0.02 1.36 15 28 H 0.01 0.46 7.37 -2.39 -0.02 0.44 15 29 H 0.27 15.33 8.31 -92.71 -0.77 14.56 15 Total: -1.00 -73.07 287.35 2.89 -70.18 By element: Atomic # 1 Polarization: -2.21 SS G_CDS: 1.19 Total: -1.02 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 5.15 Total: 8.93 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -3.42 Total: -102.04 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.06 Total: -29.86 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Atomic # 16 Polarization: 6.69 SS G_CDS: -1.30 Total: 5.40 kcal Atomic # 35 Polarization: 1.38 SS G_CDS: -0.70 Total: 0.69 kcal Total: -73.07 2.89 -70.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277812372.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.093 kcal (2) G-P(sol) polarization free energy of solvation -73.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds