Wall clock time and date at job start Tue Mar 31 2020 12:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99830 * 2 1 4 4 H 1.48508 * 109.46940 * 269.99626 * 3 2 1 5 5 H 1.48500 * 109.47294 * 29.99294 * 3 2 1 6 6 H 1.48502 * 109.47236 * 149.99855 * 3 2 1 7 7 C 1.37879 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00002 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00108 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47450 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.47344 * 180.02562 * 10 9 7 12 12 C 1.46894 * 111.00005 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47246 * 179.97438 * 12 11 10 14 14 C 1.38245 * 119.98481 * 260.00260 * 13 12 11 15 15 C 1.38344 * 120.00970 * 180.02562 * 14 13 12 16 16 Cl 1.73599 * 120.00353 * 179.97438 * 15 14 13 17 17 C 1.38347 * 119.98562 * 0.02831 * 15 14 13 18 18 C 1.38304 * 119.97947 * 359.97183 * 17 15 14 19 19 Cl 1.73600 * 120.00952 * 180.02562 * 18 17 15 20 20 C 1.38197 * 119.98536 * 80.02429 * 13 12 11 21 21 N 1.48005 * 119.99391 * 359.97438 * 20 13 12 22 22 O 1.21801 * 119.99983 * 90.00204 * 21 20 13 23 23 O 1.21804 * 120.00537 * 269.99671 * 21 20 13 24 24 H 0.96987 * 119.99881 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.46545 * 60.00975 * 9 7 2 26 26 H 1.08998 * 109.47850 * 300.00958 * 9 7 2 27 27 H 1.09002 * 109.46753 * 60.00246 * 10 9 7 28 28 H 1.09006 * 109.46695 * 300.01001 * 10 9 7 29 29 H 1.00903 * 110.99695 * 56.04839 * 11 10 9 30 30 H 1.09004 * 109.46918 * 59.99969 * 12 11 10 31 31 H 1.08997 * 109.47425 * 300.00020 * 12 11 10 32 32 H 1.07999 * 119.99425 * 359.74735 * 14 13 12 33 33 H 1.08004 * 120.00942 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0217 -2.6365 0.0001 11 7 5.4906 -2.6365 0.0001 12 6 6.0171 -4.0079 0.0009 13 6 7.5236 -3.9676 0.0003 14 6 8.2193 -4.1578 -1.1791 15 6 9.6023 -4.1215 -1.1802 16 17 10.4758 -4.3610 -2.6611 17 6 10.2889 -3.8955 -0.0006 18 6 9.5924 -3.7053 1.1790 19 17 10.4532 -3.4209 2.6595 20 6 8.2089 -3.7411 1.1787 21 7 7.4633 -3.5375 2.4409 22 8 7.1838 -4.4921 3.1439 23 8 7.1290 -2.4154 2.7767 24 1 -0.4849 0.8399 -0.0004 25 1 3.8752 -0.6797 0.8896 26 1 3.8747 -0.6807 -0.8904 27 1 3.6580 -3.1505 -0.8897 28 1 3.6585 -3.1502 0.8903 29 1 5.8521 -2.1103 0.7815 30 1 5.6676 -4.5317 -0.8889 31 1 5.6676 -4.5308 0.8911 32 1 7.6833 -4.3392 -2.0990 33 1 11.3686 -3.8675 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290787341.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:47 Heat of formation + Delta-G solvation = 9.317047 kcal Electronic energy + Delta-G solvation = -21516.666566 eV Core-core repulsion = 17825.501984 eV Total energy + Delta-G solvation = -3691.164582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.032 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.53553 -40.27645 -37.63311 -37.39916 -36.70673 -36.28090 -33.45911 -32.30047 -32.06258 -29.83596 -27.13031 -25.97123 -23.68933 -23.33403 -22.10521 -20.53283 -19.62575 -18.97223 -18.22124 -17.52604 -16.81437 -16.23551 -15.82308 -15.54122 -15.03616 -14.75420 -14.37476 -14.00610 -13.62750 -13.14422 -13.12021 -12.84490 -12.59037 -12.32318 -11.97157 -11.87967 -11.73948 -11.69990 -11.41137 -11.35610 -11.24320 -11.05526 -10.26248 -10.06699 -9.81937 -9.79146 -9.65828 -9.25689 -8.54529 -8.31706 -6.05090 -4.04221 -0.25949 0.08513 0.25380 0.80586 0.95512 1.44315 2.33154 3.33768 3.41094 3.46995 3.51496 3.99516 4.00709 4.09416 4.40258 4.46608 4.60569 4.61383 4.79770 5.13624 5.25617 5.29606 5.32379 5.48873 5.97981 6.01682 6.09201 6.64956 6.87794 7.26417 7.31309 7.37541 7.50232 7.79145 8.50250 8.97729 9.56867 11.08037 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.003494 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.008556 B = 8011.015059 C = 9013.720493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.071 0.929 9 C -0.009 4.009 10 C 0.073 3.927 11 N -0.688 5.688 12 C 0.075 3.925 13 C 0.001 3.999 14 C -0.077 4.077 15 C 0.008 3.992 16 Cl -0.030 7.030 17 C -0.098 4.098 18 C 0.012 3.988 19 Cl -0.021 7.021 20 C -0.015 4.015 21 N 0.014 4.986 22 O -0.126 6.126 23 O -0.116 6.116 24 H 0.264 0.736 25 H 0.017 0.983 26 H 0.022 0.978 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.343 0.657 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.166 0.834 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.678 -11.210 -1.696 28.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.054 4.054 11 N -0.321 5.321 12 C -0.054 4.054 13 C -0.001 4.001 14 C -0.097 4.097 15 C -0.020 4.020 16 Cl 0.000 7.000 17 C -0.118 4.118 18 C -0.016 4.016 19 Cl 0.008 6.992 20 C -0.097 4.097 21 N 0.546 4.454 22 O -0.349 6.349 23 O -0.341 6.341 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.161 0.839 30 H 0.123 0.877 31 H 0.066 0.934 32 H 0.184 0.816 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 26.097 -11.134 -3.039 28.535 hybrid contribution 0.223 0.694 1.225 1.425 sum 26.320 -10.440 -1.814 28.373 Atomic orbital electron populations 1.69907 1.06323 1.27005 1.50873 1.24986 0.94729 0.99215 0.94332 0.86755 0.80480 0.83410 0.78554 1.20266 1.21377 1.18775 1.21004 0.89099 0.94598 1.51420 0.91056 1.19551 0.96875 0.91230 0.97065 1.22058 0.82310 1.01007 1.00029 1.60825 1.11354 1.09451 1.50432 1.21202 0.86419 0.94071 1.03676 1.19665 0.97773 0.93490 0.89169 1.21127 0.91614 0.98402 0.98511 1.21006 0.92574 0.99748 0.88651 1.98438 1.75550 1.94558 1.31483 1.20890 1.01734 1.00835 0.88301 1.20293 0.88953 1.01748 0.90623 1.98470 1.76069 1.93917 1.30706 1.20686 0.90450 1.12494 0.86079 1.43356 0.99588 1.00942 1.01503 1.94592 1.56784 1.33560 1.49989 1.94649 1.54097 1.09806 1.75557 0.92660 0.96440 0.95981 0.91168 0.95331 0.83852 0.87700 0.93351 0.81633 0.81731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 10 C 0.07 1.44 5.62 -3.82 -0.02 1.42 16 11 N -0.69 -11.35 6.49 -115.06 -0.75 -12.10 16 12 C 0.08 0.97 5.44 -4.98 -0.03 0.94 16 13 C 0.00 0.01 5.39 -104.63 -0.56 -0.55 16 14 C -0.08 -0.65 9.45 -39.54 -0.37 -1.03 16 15 C 0.01 0.06 6.32 -39.50 -0.25 -0.19 16 16 Cl -0.03 -0.20 28.96 -51.86 -1.50 -1.70 16 17 C -0.10 -0.73 9.61 -39.52 -0.38 -1.11 16 18 C 0.01 0.12 6.32 -39.50 -0.25 -0.13 16 19 Cl -0.02 -0.21 28.44 -51.86 -1.47 -1.68 16 20 C -0.02 -0.18 6.11 -79.91 -0.49 -0.67 16 21 N 0.01 0.20 2.84 33.98 0.10 0.30 16 22 O -0.13 -1.88 19.24 -29.46 -0.57 -2.44 16 23 O -0.12 -1.85 17.89 -29.46 -0.53 -2.38 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.02 0.43 7.20 -51.92 -0.37 0.05 16 26 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.34 5.91 7.28 -39.29 -0.29 5.62 16 30 H 0.10 1.14 8.00 -51.93 -0.42 0.72 16 31 H 0.05 0.66 7.77 -51.93 -0.40 0.26 16 32 H 0.17 1.11 8.03 -52.49 -0.42 0.69 16 33 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 326.22 15.07 4.92 4.92 Total: -1.00 -31.26 326.22 -9.75 -41.01 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -3.15 Total: -1.10 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -2.90 Total: -15.00 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.12 Total: -38.93 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -1.09 Total: -4.83 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -2.98 Total: -3.38 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.26 -9.75 -41.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290787341.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.325 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds