Wall clock time and date at job start Tue Mar 31 2020 12:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48498 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47286 * 300.00185 * 3 2 1 6 6 H 1.48501 * 109.47023 * 60.00357 * 3 2 1 7 7 C 1.37873 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00463 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 13 13 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 14 14 O 1.52198 * 104.44745 * 180.02562 * 11 10 9 15 15 C 1.35936 * 114.00119 * 75.00341 * 14 11 10 16 16 C 1.38781 * 119.98123 * 89.99737 * 15 14 11 17 17 C 1.38361 * 120.32581 * 179.97438 * 16 15 14 18 18 C 1.37869 * 120.26912 * 0.02562 * 17 16 15 19 19 C 1.39898 * 119.94241 * 0.02562 * 18 17 16 20 20 C 1.47089 * 120.15938 * 180.02562 * 19 18 17 21 21 O 1.21261 * 120.00616 * 179.97438 * 20 19 18 22 22 C 1.38562 * 119.97452 * 269.72427 * 15 14 11 23 23 Cl 1.73598 * 120.13262 * 0.02562 * 22 15 14 24 24 H 0.96996 * 119.99792 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46657 * 60.00257 * 9 7 2 26 26 H 1.09005 * 109.47061 * 300.00589 * 9 7 2 27 27 H 1.09003 * 109.46593 * 60.00142 * 10 9 7 28 28 H 1.08994 * 109.46870 * 300.00510 * 10 9 7 29 29 H 1.08003 * 119.83772 * 359.97438 * 16 15 14 30 30 H 1.08000 * 119.86848 * 180.02562 * 17 16 15 31 31 H 1.07999 * 120.02584 * 180.02562 * 18 17 16 32 32 H 1.08009 * 119.99605 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.6640 -5.4200 1.2354 13 8 0.6649 -5.4193 -1.2386 14 8 2.4250 -6.2988 -0.0006 15 6 3.0439 -6.4566 1.1994 16 6 2.5462 -7.3661 2.1220 17 6 3.1708 -7.5329 3.3453 18 6 4.2933 -6.7963 3.6587 19 6 4.8039 -5.8756 2.7374 20 6 6.0015 -5.0876 3.0666 21 8 6.4420 -4.2906 2.2658 22 6 4.1745 -5.7135 1.4983 23 17 4.8027 -4.5798 0.3434 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8895 28 1 2.8721 -3.6042 -0.8904 29 1 1.6671 -7.9465 1.8840 30 1 2.7775 -8.2430 4.0576 31 1 4.7779 -6.9299 4.6145 32 1 6.4886 -5.2188 4.0216 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292746729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:19 Heat of formation + Delta-G solvation = -130.761349 kcal Electronic energy + Delta-G solvation = -22566.956203 eV Core-core repulsion = 18839.468322 eV Total energy + Delta-G solvation = -3727.487882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.021 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.36189 -40.37688 -38.71466 -38.44711 -37.82528 -37.37574 -35.98508 -33.28076 -32.48976 -31.58494 -27.80119 -26.15084 -24.92271 -23.77813 -22.70652 -21.40446 -19.83508 -19.23550 -18.63961 -18.19283 -17.87528 -17.31787 -16.85993 -16.60606 -16.28768 -15.89977 -15.65825 -15.36139 -15.28362 -14.59839 -14.47890 -14.35610 -14.07569 -13.61742 -13.51011 -13.43417 -13.21362 -13.08224 -13.02866 -12.87582 -12.63255 -12.37163 -12.23112 -11.96802 -11.71819 -11.16798 -10.68525 -10.53670 -10.24470 -10.02667 -8.29994 -6.43095 -1.18647 -0.63836 -0.16706 0.71539 0.97812 1.36553 1.37258 1.38678 1.51042 2.31865 2.41155 2.41201 2.75829 3.02146 3.03179 3.49460 3.59108 3.71517 3.85246 3.91447 4.05951 4.22366 4.42338 4.60435 4.75768 4.79599 4.99611 5.09142 5.16631 5.19344 5.53168 5.63999 6.02177 6.49134 6.68354 7.26430 8.82639 Molecular weight = 318.02amu Principal moments of inertia in cm(-1) A = 0.013914 B = 0.005676 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.876682 B = 4932.188436 C = 6157.220339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.029 3.971 10 C -0.608 4.608 11 S 2.594 3.406 12 O -0.968 6.968 13 O -0.967 6.967 14 O -0.660 6.660 15 C 0.024 3.976 16 C -0.065 4.065 17 C -0.099 4.099 18 C -0.012 4.012 19 C -0.184 4.184 20 C 0.378 3.622 21 O -0.481 6.481 22 C -0.035 4.035 23 Cl -0.035 7.035 24 H 0.269 0.731 25 H 0.010 0.990 26 H 0.016 0.984 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.160 0.840 30 H 0.200 0.800 31 H 0.216 0.784 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.405 -18.358 13.198 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.084 0.916 9 C -0.009 4.009 10 C -0.738 4.738 11 S 2.694 3.306 12 O -0.966 6.966 13 O -0.965 6.965 14 O -0.619 6.619 15 C -0.019 4.019 16 C -0.085 4.085 17 C -0.117 4.117 18 C -0.030 4.030 19 C -0.186 4.186 20 C 0.237 3.763 21 O -0.354 6.354 22 C -0.065 4.065 23 Cl -0.006 7.006 24 H 0.078 0.922 25 H 0.029 0.971 26 H 0.035 0.965 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.178 0.822 30 H 0.217 0.783 31 H 0.233 0.767 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 12.037 -18.318 12.419 25.193 hybrid contribution 0.036 1.620 -1.161 1.993 sum 12.073 -16.698 11.258 23.480 Atomic orbital electron populations 1.70085 1.07787 1.28335 1.50724 1.26018 0.95870 1.03489 0.94274 0.85321 0.78844 0.78277 0.78187 1.18791 1.20062 1.19687 1.21405 0.93560 0.90768 1.51730 0.91583 1.18803 0.93010 0.92264 0.96853 1.31022 1.13011 1.17911 1.11860 1.05520 0.74935 0.76413 0.73733 1.93535 1.73162 1.83958 1.45981 1.93536 1.71721 1.84866 1.46383 1.85767 1.64412 1.70267 1.41438 1.18269 0.95869 1.04248 0.83492 1.22001 0.99666 0.93804 0.93020 1.21822 0.94803 1.00263 0.94794 1.22310 0.93073 0.88319 0.99285 1.21399 1.01628 1.03291 0.92315 1.25040 0.81144 0.77154 0.92942 1.90685 1.61688 1.30540 1.52440 1.21997 0.95495 0.94763 0.94254 1.98470 1.86101 1.57837 1.58160 0.92205 0.97126 0.96535 0.84457 0.84950 0.82212 0.78343 0.76746 0.79887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 9 C 0.03 1.61 4.98 29.85 0.15 1.76 16 10 C -0.61 -26.85 3.95 71.98 0.28 -26.57 16 11 S 2.59 106.28 5.17 -56.49 -0.29 105.99 16 12 O -0.97 -40.10 16.26 -118.57 -1.93 -42.03 16 13 O -0.97 -45.53 18.09 -118.57 -2.15 -47.67 16 14 O -0.66 -22.77 9.58 -61.93 -0.59 -23.36 16 15 C 0.02 0.68 4.79 22.48 0.11 0.79 16 16 C -0.06 -1.29 9.03 22.43 0.20 -1.09 16 17 C -0.10 -0.92 10.02 22.21 0.22 -0.70 16 18 C -0.01 -0.08 9.79 22.58 0.22 0.14 16 19 C -0.18 -3.17 5.87 -20.15 -0.12 -3.28 16 20 C 0.38 5.67 11.45 70.14 0.80 6.47 16 21 O -0.48 -12.85 14.79 -2.97 -0.04 -12.90 16 22 C -0.04 -0.97 5.65 22.76 0.13 -0.85 16 23 Cl -0.04 -1.19 20.79 -2.72 -0.06 -1.25 16 24 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 25 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 26 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.14 5.68 5.57 -2.39 -0.01 5.66 16 28 H 0.13 5.59 7.25 -2.39 -0.02 5.57 16 29 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 30 H 0.20 -0.01 8.06 -2.91 -0.02 -0.04 16 31 H 0.22 -1.13 8.06 -2.91 -0.02 -1.16 16 32 H 0.19 0.24 8.06 -2.91 -0.02 0.22 16 Total: -1.00 -87.33 306.30 1.11 -86.22 By element: Atomic # 1 Polarization: -2.48 SS G_CDS: 1.16 Total: -1.32 kcal Atomic # 6 Polarization: -56.44 SS G_CDS: 2.70 Total: -53.75 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.28 Total: -56.96 kcal Atomic # 8 Polarization: -121.25 SS G_CDS: -4.71 Total: -125.96 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: 106.28 SS G_CDS: -0.29 Total: 105.99 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.06 Total: -1.25 kcal Total: -87.33 1.11 -86.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292746729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.546 kcal (2) G-P(sol) polarization free energy of solvation -87.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds