Wall clock time and date at job start Tue Mar 31 2020 11:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00343 * 2 1 4 4 H 1.48499 * 109.46961 * 269.99466 * 3 2 1 5 5 H 1.48499 * 109.47247 * 29.99428 * 3 2 1 6 6 H 1.48498 * 109.47525 * 149.99773 * 3 2 1 7 7 C 1.38816 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00601 * 180.02562 * 7 2 1 9 9 O 1.34858 * 119.99317 * 0.02562 * 7 2 1 10 10 C 1.34749 * 116.99529 * 179.97438 * 9 7 2 11 11 O 1.21507 * 120.00088 * 0.02562 * 10 9 7 12 12 C 1.47627 * 119.99598 * 180.02562 * 10 9 7 13 13 C 1.39686 * 120.15015 * 0.29637 * 12 10 9 14 14 C 1.37899 * 119.85397 * 180.21087 * 13 12 10 15 15 C 1.38454 * 120.14370 * 359.51494 * 14 13 12 16 16 I 2.09509 * 119.85169 * 180.25846 * 15 14 13 17 17 C 1.38455 * 120.29866 * 0.23591 * 15 14 13 18 18 C 1.37898 * 120.14536 * 359.97438 * 17 15 14 19 19 H 0.96999 * 120.00109 * 0.02562 * 1 2 3 20 20 H 1.08004 * 120.07654 * 0.02562 * 13 12 10 21 21 H 1.08002 * 119.93175 * 179.79907 * 14 13 12 22 22 H 1.08001 * 119.92945 * 180.02562 * 17 15 14 23 23 H 1.08003 * 120.07366 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0462 -1.4001 5 1 1.4457 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0082 -1.2022 0.0005 8 1 3.0882 -1.2022 0.0010 9 8 1.3338 -2.3700 0.0005 10 6 2.0677 -3.5001 0.0005 11 8 3.2811 -3.4365 0.0010 12 6 1.3974 -4.8154 0.0000 13 6 0.0027 -4.8921 -0.0068 14 6 -0.6171 -6.1239 -0.0029 15 6 0.1399 -7.2832 -0.0024 16 53 -0.8113 -9.1499 -0.0047 17 6 1.5228 -7.2144 -0.0009 18 6 2.1552 -5.9889 -0.0004 19 1 -0.4850 0.8400 -0.0004 20 1 -0.5890 -3.9886 -0.0121 21 1 -1.6954 -6.1847 -0.0049 22 1 2.1075 -8.1224 -0.0010 23 1 3.2339 -5.9366 0.0003 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307352395.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:34 Heat of formation + Delta-G solvation = -43.126381 kcal Electronic energy + Delta-G solvation = -12450.021747 eV Core-core repulsion = 9894.869883 eV Total energy + Delta-G solvation = -2555.151864 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 317.954 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.61616 -38.28598 -35.26352 -32.46923 -32.13318 -30.89622 -28.23392 -25.54751 -22.90615 -22.45395 -20.18836 -17.85409 -17.39334 -15.70610 -14.93256 -14.73878 -14.63252 -14.24886 -14.02751 -13.37084 -12.82157 -12.54283 -11.74192 -11.32975 -11.08208 -11.01390 -10.62209 -10.50063 -10.22310 -9.95969 -9.94825 -9.19659 -8.90692 -8.72391 -8.62835 -6.56810 -4.18445 0.88909 1.09788 1.47705 3.04151 3.12576 3.18610 3.30539 3.82328 4.17952 4.41481 4.93466 4.99809 5.04786 5.46128 5.53448 5.77765 5.97950 6.11809 6.34145 6.54744 6.85137 6.93477 7.26966 7.80824 8.58411 8.91704 9.70060 10.60421 Molecular weight = 317.95amu Principal moments of inertia in cm(-1) A = 0.062324 B = 0.003322 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.155133 B = 8425.813585 C = 8865.126409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.042 3.958 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.374 4.374 8 H 0.099 0.901 9 O -0.201 6.201 10 C 0.425 3.575 11 O -0.551 6.551 12 C -0.065 4.065 13 C -0.070 4.070 14 C -0.097 4.097 15 C -0.091 4.091 16 I -0.055 7.055 17 C -0.098 4.098 18 C -0.069 4.069 19 H 0.273 0.727 20 H 0.150 0.850 21 H 0.131 0.869 22 H 0.131 0.869 23 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.603 -18.613 -0.014 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.163 4.163 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.449 4.449 8 H 0.117 0.883 9 O -0.108 6.108 10 C 0.273 3.727 11 O -0.450 6.450 12 C -0.066 4.066 13 C -0.090 4.090 14 C -0.117 4.117 15 C -0.232 4.232 16 I 0.095 6.905 17 C -0.119 4.119 18 C -0.089 4.089 19 H 0.083 0.917 20 H 0.168 0.832 21 H 0.149 0.851 22 H 0.149 0.851 23 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.164 -19.713 -0.010 20.378 hybrid contribution 0.910 1.860 -0.007 2.071 sum -4.254 -17.853 -0.017 18.353 Atomic orbital electron populations 1.69965 1.06134 1.28172 1.44801 1.25416 0.95880 0.99064 0.95962 0.85618 0.79119 0.79294 0.78913 1.19692 1.20149 1.18901 1.21367 0.92662 0.79659 1.51240 0.88298 1.83884 1.39260 1.13308 1.74308 1.20669 0.85918 0.85382 0.80718 1.90634 1.14980 1.87752 1.51672 1.19603 0.93658 0.92053 1.01331 1.21688 0.93978 0.98241 0.95127 1.21037 0.99960 0.90971 0.99760 1.24294 0.95866 0.94935 1.08072 1.96736 1.78266 1.16761 1.98769 1.20920 0.92498 0.98066 1.00420 1.21269 1.00908 0.90255 0.96518 0.91724 0.83242 0.85073 0.85135 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.08 13.67 55.49 0.76 -23.32 14 2 C 0.04 1.15 5.50 -17.52 -0.10 1.05 14 3 Si 0.95 20.60 29.55 -169.99 -5.02 15.58 14 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 14 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 14 6 H -0.26 -5.68 7.11 56.52 0.40 -5.28 14 7 C -0.37 -10.78 9.65 30.95 0.30 -10.49 14 8 H 0.10 2.87 6.86 -52.49 -0.36 2.51 14 9 O -0.20 -5.63 8.99 -21.70 -0.20 -5.83 14 10 C 0.42 10.62 7.83 34.56 0.27 10.89 14 11 O -0.55 -14.86 15.59 -19.27 -0.30 -15.16 14 12 C -0.06 -1.28 5.87 -104.98 -0.62 -1.89 14 13 C -0.07 -1.23 9.62 -39.17 -0.38 -1.61 14 14 C -0.10 -1.40 9.74 -39.63 -0.39 -1.78 14 15 C -0.09 -1.23 6.21 -39.42 -0.24 -1.48 14 16 I -0.06 -0.61 40.25 -73.02 -2.94 -3.55 14 17 C -0.10 -1.36 9.74 -39.63 -0.39 -1.74 14 18 C -0.07 -1.15 9.60 -39.16 -0.38 -1.53 14 19 H 0.27 7.02 8.31 -40.82 -0.34 6.68 14 20 H 0.15 2.75 7.61 -52.48 -0.40 2.35 14 21 H 0.13 1.62 8.06 -52.49 -0.42 1.19 14 22 H 0.13 1.48 8.06 -52.49 -0.42 1.05 14 23 H 0.14 2.28 7.65 -52.48 -0.40 1.88 14 LS Contribution 249.67 15.07 3.76 3.76 Total: -1.00 -30.42 249.67 -6.99 -37.41 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -1.14 Total: -0.33 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -1.91 Total: -8.57 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.76 Total: -23.32 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.50 Total: -20.98 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 53 Polarization: -0.61 SS G_CDS: -2.94 Total: -3.55 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.42 -6.99 -37.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307352395.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.721 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds