Wall clock time and date at job start Tue Mar 31 2020 11:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00343 * 2 1 4 4 H 1.48499 * 109.46961 * 269.99466 * 3 2 1 5 5 H 1.48499 * 109.47247 * 29.99428 * 3 2 1 6 6 H 1.48498 * 109.47525 * 149.99773 * 3 2 1 7 7 C 1.38816 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00601 * 180.02562 * 7 2 1 9 9 O 1.34858 * 119.99317 * 0.02562 * 7 2 1 10 10 C 1.34749 * 116.99529 * 179.97438 * 9 7 2 11 11 O 1.21507 * 120.00088 * 0.02562 * 10 9 7 12 12 C 1.47627 * 119.99598 * 180.02562 * 10 9 7 13 13 C 1.39686 * 120.15015 * 0.29637 * 12 10 9 14 14 C 1.37899 * 119.85397 * 180.21087 * 13 12 10 15 15 C 1.38454 * 120.14370 * 359.51494 * 14 13 12 16 16 I 2.09509 * 119.85169 * 180.25846 * 15 14 13 17 17 C 1.38455 * 120.29866 * 0.23591 * 15 14 13 18 18 C 1.37898 * 120.14536 * 359.97438 * 17 15 14 19 19 H 0.96999 * 120.00109 * 0.02562 * 1 2 3 20 20 H 1.08004 * 120.07654 * 0.02562 * 13 12 10 21 21 H 1.08002 * 119.93175 * 179.79907 * 14 13 12 22 22 H 1.08001 * 119.92945 * 180.02562 * 17 15 14 23 23 H 1.08003 * 120.07366 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0462 -1.4001 5 1 1.4457 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0082 -1.2022 0.0005 8 1 3.0882 -1.2022 0.0010 9 8 1.3338 -2.3700 0.0005 10 6 2.0677 -3.5001 0.0005 11 8 3.2811 -3.4365 0.0010 12 6 1.3974 -4.8154 0.0000 13 6 0.0027 -4.8921 -0.0068 14 6 -0.6171 -6.1239 -0.0029 15 6 0.1399 -7.2832 -0.0024 16 53 -0.8113 -9.1499 -0.0047 17 6 1.5228 -7.2144 -0.0009 18 6 2.1552 -5.9889 -0.0004 19 1 -0.4850 0.8400 -0.0004 20 1 -0.5890 -3.9886 -0.0121 21 1 -1.6954 -6.1847 -0.0049 22 1 2.1075 -8.1224 -0.0010 23 1 3.2339 -5.9366 0.0003 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307352395.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:34 Heat of formation + Delta-G solvation = -60.530772 kcal Electronic energy + Delta-G solvation = -12450.776458 eV Core-core repulsion = 9894.869883 eV Total energy + Delta-G solvation = -2555.906575 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 317.954 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.35787 -39.88096 -37.31299 -34.41729 -33.59408 -32.18923 -29.56853 -27.53092 -24.51925 -23.75503 -21.83072 -19.94873 -19.12706 -17.49159 -16.65476 -16.41937 -16.26522 -15.84873 -15.56438 -14.62997 -14.38310 -14.15691 -13.65760 -13.20896 -12.45630 -12.40553 -12.32022 -12.17042 -12.02867 -11.42106 -11.20521 -10.96917 -10.75081 -10.16578 -9.92526 -8.61177 -6.38106 -0.50561 -0.04868 0.20923 1.33388 1.33800 1.51042 1.65747 2.06272 2.60180 2.62625 2.98301 3.68346 3.82494 4.12593 4.19490 4.46460 4.51832 4.86636 5.00185 5.05789 5.15545 5.35394 5.61244 5.75267 6.53219 6.83232 7.64634 8.59019 Molecular weight = 317.95amu Principal moments of inertia in cm(-1) A = 0.062324 B = 0.003322 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.155133 B = 8425.813585 C = 8865.126409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.000 4.000 3 Si 1.019 2.981 4 H -0.259 1.259 5 H -0.258 1.258 6 H -0.263 1.263 7 C -0.422 4.422 8 H 0.084 0.916 9 O -0.228 6.228 10 C 0.427 3.573 11 O -0.578 6.578 12 C -0.100 4.100 13 C -0.073 4.073 14 C -0.088 4.088 15 C -0.086 4.086 16 I -0.009 7.009 17 C -0.084 4.084 18 C -0.065 4.065 19 H 0.282 0.718 20 H 0.131 0.869 21 H 0.157 0.843 22 H 0.164 0.836 23 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 -20.454 -0.032 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.201 4.201 3 Si 0.837 3.163 4 H -0.183 1.183 5 H -0.181 1.181 6 H -0.187 1.187 7 C -0.497 4.497 8 H 0.102 0.898 9 O -0.136 6.136 10 C 0.277 3.723 11 O -0.478 6.478 12 C -0.102 4.102 13 C -0.093 4.093 14 C -0.108 4.108 15 C -0.226 4.226 16 I 0.140 6.860 17 C -0.105 4.105 18 C -0.085 4.085 19 H 0.092 0.908 20 H 0.149 0.851 21 H 0.174 0.826 22 H 0.182 0.818 23 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.736 -21.579 -0.030 22.329 hybrid contribution 1.007 2.070 -0.003 2.301 sum -4.729 -19.510 -0.032 20.075 Atomic orbital electron populations 1.70039 1.07664 1.29760 1.45520 1.26581 0.96921 1.02276 0.94334 0.84606 0.77743 0.74259 0.79657 1.18333 1.18149 1.18729 1.21538 0.92411 0.80956 1.54810 0.89826 1.83910 1.39890 1.13969 1.75803 1.21718 0.85925 0.86546 0.78103 1.90581 1.16334 1.88445 1.52448 1.19453 0.94760 0.90125 1.05841 1.21558 0.92951 0.99175 0.95627 1.21214 1.01217 0.89877 0.98480 1.24752 0.96151 0.96788 1.04910 1.96806 1.77483 1.13094 1.98651 1.21213 0.92908 0.97885 0.98463 1.21351 1.00927 0.90248 0.95994 0.90847 0.85060 0.82561 0.81805 0.84043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.78 13.67 21.64 0.30 -51.48 14 2 C 0.00 0.02 5.50 84.89 0.47 0.49 14 3 Si 1.02 42.75 29.55 68.60 2.03 44.78 14 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 14 5 H -0.26 -9.93 7.11 99.48 0.71 -9.22 14 6 H -0.26 -10.84 7.11 99.48 0.71 -10.14 14 7 C -0.42 -25.67 9.65 67.96 0.66 -25.01 14 8 H 0.08 5.16 6.86 -2.91 -0.02 5.14 14 9 O -0.23 -13.57 8.99 11.13 0.10 -13.47 14 10 C 0.43 22.53 7.83 70.30 0.55 23.08 14 11 O -0.58 -32.73 15.59 19.81 0.31 -32.42 14 12 C -0.10 -4.05 5.87 -20.10 -0.12 -4.17 14 13 C -0.07 -2.59 9.62 22.54 0.22 -2.37 14 14 C -0.09 -2.36 9.74 22.24 0.22 -2.14 14 15 C -0.09 -2.07 6.21 22.37 0.14 -1.93 14 16 I -0.01 -0.17 40.25 -18.82 -0.76 -0.93 14 17 C -0.08 -2.09 9.74 22.24 0.22 -1.87 14 18 C -0.07 -2.12 9.60 22.54 0.22 -1.90 14 19 H 0.28 14.73 8.31 -92.71 -0.77 13.96 14 20 H 0.13 5.10 7.61 -2.91 -0.02 5.08 14 21 H 0.16 3.42 8.06 -2.91 -0.02 3.39 14 22 H 0.16 3.01 8.06 -2.91 -0.02 2.98 14 23 H 0.14 4.54 7.65 -2.91 -0.02 4.52 14 Total: -1.00 -68.98 249.67 5.77 -63.21 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.24 Total: 6.16 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 2.56 Total: -15.84 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.30 Total: -51.48 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: 0.41 Total: -45.89 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 53 Polarization: -0.17 SS G_CDS: -0.76 Total: -0.93 kcal Total: -68.98 5.77 -63.21 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307352395.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.680 kcal (2) G-P(sol) polarization free energy of solvation -68.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds