Wall clock time and date at job start Tue Mar 31 2020 11:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86790 * 119.99852 * 2 1 4 4 H 1.48500 * 109.47359 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47306 * 299.99829 * 3 2 1 6 6 H 1.48496 * 109.47396 * 59.99930 * 3 2 1 7 7 C 1.37878 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99617 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00105 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46621 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99823 * 179.97438 * 10 9 7 12 12 O 1.21578 * 119.99881 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99750 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99638 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47152 * 180.02562 * 14 13 11 16 16 C 1.38456 * 122.55257 * 105.00371 * 15 14 13 17 17 C 1.33358 * 114.93088 * 180.02562 * 16 15 14 18 18 S 1.75879 * 109.61515 * 359.97438 * 17 16 15 19 19 C 1.33476 * 122.55487 * 285.02809 * 15 14 13 20 20 Br 1.89099 * 125.20932 * 359.97438 * 19 15 14 21 21 H 0.96996 * 119.99998 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47400 * 60.00255 * 9 7 2 23 23 H 1.08996 * 109.47139 * 299.99481 * 9 7 2 24 24 H 0.96997 * 120.00641 * 0.02562 * 10 9 7 25 25 H 0.96998 * 119.99883 * 0.02562 * 13 11 10 26 26 H 1.09005 * 109.47114 * 60.00566 * 14 13 11 27 27 H 1.08999 * 109.47419 * 300.00600 * 14 13 11 28 28 H 1.08006 * 122.53207 * 0.03927 * 16 15 14 29 29 H 1.08006 * 125.19510 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5584 -5.1055 0.0011 13 7 2.6296 -5.9078 0.0005 14 6 2.1413 -7.2890 0.0017 15 6 3.3133 -8.2362 0.0014 16 6 3.7036 -8.9388 1.1288 17 6 4.7607 -9.7337 0.9579 18 16 5.3236 -9.6181 -0.7044 19 6 4.0546 -8.4614 -1.0855 20 35 3.7817 -7.6601 -2.7765 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 3.1566 -3.4355 0.0009 25 1 3.5832 -5.7305 0.0002 26 1 1.5348 -7.4607 -0.8877 27 1 1.5366 -7.4599 0.8923 28 1 3.1906 -8.8499 2.0751 29 1 5.2030 -10.3544 1.7231 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338745494.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:10 Heat of formation + Delta-G solvation = 1.951260 kcal Electronic energy + Delta-G solvation = -15843.363308 eV Core-core repulsion = 12939.495342 eV Total energy + Delta-G solvation = -2903.867966 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.48291 -38.32159 -34.35494 -33.79216 -32.28768 -32.04259 -29.38900 -27.35943 -25.99540 -23.22789 -22.25082 -20.15031 -19.18510 -18.16310 -17.77180 -16.31012 -15.74847 -15.30299 -14.79593 -14.60835 -13.83077 -13.58879 -13.52104 -13.24053 -12.99714 -12.49802 -12.32031 -11.92584 -11.62801 -11.23317 -11.18495 -10.89733 -10.88068 -10.40605 -10.27276 -9.46031 -9.31539 -8.94321 -8.82852 -8.73673 -8.63847 -7.70633 -6.12192 -4.18235 0.39524 0.78859 1.42316 1.61379 2.14703 3.26174 3.32865 3.35993 3.58048 4.01042 4.36154 4.52123 4.87327 4.89513 5.19931 5.23924 5.31811 5.61657 5.73938 5.93614 6.04778 6.84532 7.16214 7.56757 7.59772 7.61927 7.94835 8.08412 8.80985 8.99025 9.37825 9.52474 10.98108 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.023504 B = 0.003298 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.007658 B = 8488.293780 C = 8852.593201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.696 3.304 12 O -0.600 6.600 13 N -0.750 5.750 14 C 0.196 3.804 15 C -0.076 4.076 16 C -0.120 4.120 17 C -0.201 4.201 18 S 0.151 5.849 19 C -0.193 4.193 20 Br 0.022 6.978 21 H 0.265 0.735 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.386 0.614 25 H 0.392 0.608 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.152 0.848 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.102 -22.181 -1.846 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.381 5.381 11 C 0.396 3.604 12 O -0.480 6.480 13 N -0.408 5.408 14 C 0.069 3.931 15 C -0.092 4.092 16 C -0.150 4.150 17 C -0.338 4.338 18 S 0.414 5.586 19 C -0.391 4.391 20 Br 0.106 6.894 21 H 0.074 0.926 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.218 0.782 25 H 0.225 0.775 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.169 0.831 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 12.882 -22.603 -3.306 26.225 hybrid contribution 0.295 1.477 1.197 1.924 sum 13.177 -21.126 -2.109 24.988 Atomic orbital electron populations 1.69993 1.06058 1.27087 1.49160 1.24950 0.94918 0.99388 0.94860 0.86364 0.79807 0.83038 0.77695 1.19690 1.20851 1.20841 1.21271 0.93296 0.90445 1.52793 0.91923 1.18975 0.87774 0.81054 0.97593 1.45698 1.10771 1.04345 1.77262 1.16081 0.85067 0.80960 0.78328 1.90871 1.14177 1.84193 1.58714 1.45056 1.08904 1.04259 1.82554 1.19673 0.91367 0.78655 1.03428 1.19103 0.98471 0.99858 0.91777 1.20072 0.97880 0.97620 0.99463 1.25794 1.02064 1.06015 0.99921 1.84370 1.29545 1.39750 1.04915 1.26179 1.06106 1.08869 0.97908 1.96819 1.96075 1.79766 1.16717 0.92566 0.95749 0.95744 0.78185 0.77548 0.90380 0.90487 0.83057 0.81038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 15 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 15 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 15 9 C 0.27 7.25 5.43 -5.19 -0.03 7.22 15 10 N -0.73 -15.89 5.55 -66.42 -0.37 -16.26 15 11 C 0.70 14.55 8.57 -86.91 -0.74 13.80 15 12 O -0.60 -15.13 16.34 5.30 0.09 -15.04 15 13 N -0.75 -11.54 5.55 -66.41 -0.37 -11.91 15 14 C 0.20 2.64 5.42 -5.20 -0.03 2.61 15 15 C -0.08 -0.82 5.17 -106.21 -0.55 -1.37 15 16 C -0.12 -1.04 9.94 -41.21 -0.41 -1.45 15 17 C -0.20 -1.47 11.22 29.03 0.33 -1.14 15 18 S 0.15 1.24 23.34 -107.50 -2.51 -1.27 15 19 C -0.19 -2.04 6.95 29.07 0.20 -1.84 15 20 Br 0.02 0.25 33.24 -68.01 -2.26 -2.01 15 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 22 H 0.02 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.02 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.39 7.26 8.33 -40.82 -0.34 6.92 15 25 H 0.39 5.17 8.48 -40.82 -0.35 4.83 15 26 H 0.08 1.15 7.89 -51.93 -0.41 0.74 15 27 H 0.08 1.04 8.06 -51.93 -0.42 0.62 15 28 H 0.15 1.11 8.06 -52.48 -0.42 0.68 15 29 H 0.17 0.79 8.06 -52.48 -0.42 0.36 15 LS Contribution 296.67 15.07 4.47 4.47 Total: -1.00 -32.67 296.67 -9.62 -42.29 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -2.74 Total: 4.97 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.65 Total: 4.31 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.00 Total: -53.80 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.09 Total: -15.04 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.51 Total: -1.27 kcal Atomic # 35 Polarization: 0.25 SS G_CDS: -2.26 Total: -2.01 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.67 -9.62 -42.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338745494.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.246 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds