Wall clock time and date at job start Tue Mar 31 2020 12:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47403 * 345.22239 * 3 2 1 5 5 C 1.36931 * 119.99960 * 272.88417 * 4 3 2 6 6 H 1.08001 * 119.99911 * 187.03805 * 5 4 3 7 7 C 1.38819 * 120.00104 * 7.04111 * 5 4 3 8 8 N 1.31619 * 119.99896 * 26.45565 * 7 5 4 9 9 Si 1.86799 * 119.99984 * 206.45188 * 7 5 4 10 10 H 1.48508 * 109.46566 * 90.00199 * 9 7 5 11 11 H 1.48496 * 109.47149 * 209.99987 * 9 7 5 12 12 H 1.48495 * 109.47467 * 330.00340 * 9 7 5 13 13 S 1.65598 * 119.99840 * 92.88469 * 4 3 2 14 14 O 1.42095 * 106.40581 * 336.46140 * 13 4 3 15 15 O 1.42096 * 106.40013 * 203.53919 * 13 4 3 16 16 C 1.76200 * 107.21817 * 90.00098 * 13 4 3 17 17 C 1.38224 * 119.98327 * 269.72519 * 16 13 4 18 18 C 1.38443 * 120.00086 * 179.76949 * 17 16 13 19 19 F 1.35109 * 120.01689 * 180.24997 * 18 17 16 20 20 C 1.38457 * 119.96442 * 0.50103 * 18 17 16 21 21 C 1.38288 * 119.96179 * 359.75233 * 20 18 17 22 22 Cl 1.73596 * 120.00236 * 180.02562 * 21 20 18 23 23 C 1.38210 * 119.98181 * 89.99815 * 16 13 4 24 24 H 1.09004 * 109.46885 * 225.22212 * 3 2 1 25 25 H 1.09001 * 109.47196 * 105.22737 * 3 2 1 26 26 H 0.96993 * 119.99894 * 179.97438 * 8 7 5 27 27 H 1.08003 * 120.00086 * 359.97438 * 17 16 13 28 28 H 1.08001 * 120.01790 * 179.76446 * 20 18 17 29 29 H 1.08000 * 119.97760 * 359.95455 * 23 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3346 0.3523 5 6 3.2691 -1.6758 1.6672 6 1 3.7353 -2.6154 1.9247 7 6 2.8444 -0.8141 2.6692 8 7 1.8596 0.0283 2.4391 9 14 3.6704 -0.8501 4.3443 10 1 4.8117 0.1000 4.3538 11 1 2.6902 -0.4569 5.3881 12 1 4.1661 -2.2220 4.6224 13 16 3.4415 -2.4313 -0.8397 14 8 2.6810 -2.0421 -1.9751 15 8 3.3440 -3.7169 -0.2424 16 6 5.1345 -2.2126 -1.2761 17 6 5.4802 -1.3287 -2.2811 18 6 6.8107 -1.1531 -2.6211 19 9 7.1493 -0.2855 -3.5999 20 6 7.7937 -1.8708 -1.9610 21 6 7.4458 -2.7585 -0.9594 22 17 8.6774 -3.6584 -0.1307 23 6 6.1157 -2.9291 -0.6173 24 1 2.9709 0.7247 0.7295 25 1 2.9712 0.2707 -0.9916 26 1 1.5626 0.6301 3.1393 27 1 4.7126 -0.7727 -2.7989 28 1 8.8316 -1.7372 -2.2281 29 1 5.8443 -3.6221 0.1653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339381837.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:52 Heat of formation + Delta-G solvation = -66.609812 kcal Electronic energy + Delta-G solvation = -22056.492955 eV Core-core repulsion = 18240.619339 eV Total energy + Delta-G solvation = -3815.873616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 318.003 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -50.06169 -40.23466 -38.42155 -38.19705 -37.59737 -36.84295 -36.20432 -33.28216 -32.47912 -31.67393 -29.14201 -25.85753 -24.79890 -24.05063 -20.66122 -19.90609 -19.65801 -18.60571 -17.92491 -17.78215 -17.44925 -16.86532 -16.79634 -16.42951 -16.16506 -15.81277 -15.37711 -14.75482 -14.64321 -14.42468 -14.10729 -13.56112 -13.53619 -13.30851 -13.24568 -13.16659 -13.03675 -12.96009 -12.72409 -12.64153 -12.29781 -12.16448 -12.04553 -11.96405 -11.75041 -11.35036 -10.50736 -10.10336 -9.92652 -8.21602 -5.81313 -0.72493 -0.45003 -0.21886 0.84891 1.54045 1.58715 1.66026 1.81189 2.10374 2.37554 2.47604 2.65913 2.84799 2.90732 3.10584 3.49640 3.62011 3.71742 3.72809 3.88292 4.02308 4.29380 4.42112 4.59747 4.76412 4.79701 4.88114 5.29444 5.43094 5.66490 6.41752 6.97409 7.17034 7.35388 8.83090 Molecular weight = 318.00amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.006015 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.039281 B = 4653.572367 C = 5759.107574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C 0.264 3.736 3 C 0.237 3.763 4 N -0.857 5.857 5 C -0.345 4.345 6 H 0.114 0.886 7 C 0.012 3.988 8 N -0.900 5.900 9 Si 0.966 3.034 10 H -0.265 1.265 11 H -0.299 1.299 12 H -0.267 1.267 13 S 2.685 3.315 14 O -0.982 6.982 15 O -0.981 6.981 16 C -0.630 4.630 17 C -0.055 4.055 18 C 0.094 3.906 19 F -0.125 7.125 20 C -0.084 4.084 21 C -0.033 4.033 22 Cl -0.039 7.039 23 C -0.024 4.024 24 H 0.132 0.868 25 H 0.128 0.872 26 H 0.268 0.732 27 H 0.172 0.828 28 H 0.182 0.818 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.705 -0.643 -7.103 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C -0.054 4.054 3 C 0.108 3.892 4 N -0.689 5.689 5 C -0.473 4.473 6 H 0.132 0.868 7 C -0.191 4.191 8 N -0.540 5.540 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.226 1.226 12 H -0.191 1.191 13 S 2.778 3.222 14 O -0.972 6.972 15 O -0.971 6.971 16 C -0.717 4.717 17 C -0.075 4.075 18 C 0.074 3.926 19 F -0.104 7.104 20 C -0.104 4.104 21 C -0.060 4.060 22 Cl -0.010 7.010 23 C -0.044 4.044 24 H 0.149 0.851 25 H 0.146 0.854 26 H 0.078 0.922 27 H 0.189 0.811 28 H 0.199 0.801 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 14.521 -1.190 -7.346 16.317 hybrid contribution 1.046 0.349 1.128 1.577 sum 15.566 -0.841 -6.218 16.784 Atomic orbital electron populations 1.80825 1.15185 1.09519 1.14836 1.29887 0.96129 0.91453 0.87942 1.18752 0.80064 0.87344 1.03055 1.52972 1.74689 1.24108 1.17177 1.19419 1.41136 1.06754 0.80008 0.86837 1.25576 0.95080 0.96646 1.01792 1.70013 1.23047 1.25172 1.35780 0.85342 0.78270 0.79038 0.78176 1.18987 1.22629 1.19144 1.01781 0.75090 0.73194 0.72181 1.93526 1.68866 1.83642 1.51154 1.93491 1.86726 1.39474 1.77423 1.30981 1.25345 1.08065 1.07334 1.21186 0.96748 0.95280 0.94313 1.17384 0.92634 0.92604 0.90007 1.91567 1.92843 1.66768 1.59194 1.21481 1.01926 0.93433 0.93539 1.20674 0.89884 0.98047 0.97435 1.98401 1.52362 1.73124 1.77116 1.21002 0.90636 0.95848 0.96929 0.85056 0.85446 0.92179 0.81088 0.80066 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -26.53 18.54 20.00 0.37 -26.16 15 2 C 0.26 12.21 13.34 89.44 1.19 13.41 15 3 C 0.24 9.03 5.09 84.57 0.43 9.46 15 4 N -0.86 -35.20 2.88 -352.52 -1.02 -36.22 15 5 C -0.34 -15.61 9.37 84.04 0.79 -14.82 15 6 H 0.11 5.08 7.41 -2.91 -0.02 5.05 15 7 C 0.01 0.54 4.88 84.86 0.41 0.96 15 8 N -0.90 -44.07 9.07 21.65 0.20 -43.87 15 9 Si 0.97 37.55 29.63 68.60 2.03 39.58 15 10 H -0.26 -9.72 7.11 99.48 0.71 -9.01 15 11 H -0.30 -12.22 7.11 99.48 0.71 -11.51 15 12 H -0.27 -10.18 7.11 99.48 0.71 -9.48 15 13 S 2.69 100.90 5.60 -56.49 -0.32 100.59 15 14 O -0.98 -38.73 16.29 -128.00 -2.08 -40.81 15 15 O -0.98 -42.44 16.16 -128.00 -2.07 -44.51 15 16 C -0.63 -18.20 5.97 22.26 0.13 -18.07 15 17 C -0.06 -1.34 9.50 22.32 0.21 -1.13 15 18 C 0.09 1.98 7.30 22.37 0.16 2.14 15 19 F -0.13 -2.53 17.27 44.97 0.78 -1.75 15 20 C -0.08 -1.57 9.81 22.33 0.22 -1.35 15 21 C -0.03 -0.72 6.32 22.32 0.14 -0.58 15 22 Cl -0.04 -0.77 28.96 -2.72 -0.08 -0.84 15 23 C -0.02 -0.65 9.30 22.30 0.21 -0.44 15 24 H 0.13 4.96 6.45 -2.38 -0.02 4.94 15 25 H 0.13 3.57 7.69 -2.39 -0.02 3.55 15 26 H 0.27 12.89 8.31 -92.71 -0.77 12.12 15 27 H 0.17 3.63 7.61 -2.91 -0.02 3.60 15 28 H 0.18 2.21 8.06 -2.91 -0.02 2.18 15 29 H 0.15 4.22 7.61 -2.91 -0.02 4.20 15 Total: -1.00 -61.69 299.74 2.94 -58.75 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.23 Total: 5.66 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 3.90 Total: -10.41 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -0.45 Total: -106.25 kcal Atomic # 8 Polarization: -81.17 SS G_CDS: -4.15 Total: -85.32 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.78 Total: -1.75 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Atomic # 16 Polarization: 100.90 SS G_CDS: -0.32 Total: 100.59 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.84 kcal Total: -61.69 2.94 -58.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339381837.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.857 kcal (2) G-P(sol) polarization free energy of solvation -61.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds