Wall clock time and date at job start Tue Mar 31 2020 11:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.39676 * 110.99807 * 2 1 4 4 C 1.38930 * 120.07263 * 63.93157 * 3 2 1 5 5 C 1.38089 * 119.92063 * 180.02562 * 4 3 2 6 6 C 1.38306 * 120.07673 * 359.72243 * 5 4 3 7 7 C 1.38265 * 120.14784 * 0.55309 * 6 5 4 8 8 C 1.38133 * 120.07407 * 359.44555 * 7 6 5 9 9 C 1.50699 * 120.03523 * 180.29677 * 8 7 6 10 10 N 1.46900 * 109.46993 * 260.00216 * 9 8 7 11 11 C 1.46897 * 110.99808 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.47188 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99678 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00132 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99660 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00065 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46976 * 89.99283 * 16 14 12 18 18 H 1.48499 * 109.47217 * 209.99864 * 16 14 12 19 19 H 1.48506 * 109.46842 * 329.99694 * 16 14 12 20 20 C 1.46898 * 110.99667 * 123.95093 * 2 1 3 21 21 C 1.53118 * 109.52223 * 175.91793 * 20 2 1 22 22 C 1.53045 * 109.27577 * 182.50397 * 21 20 2 23 23 N 1.46845 * 109.57141 * 59.08468 * 22 21 20 24 24 C 1.46908 * 110.99927 * 174.19197 * 23 22 21 25 25 C 1.46850 * 111.20132 * 298.28870 * 23 22 21 26 26 C 1.53038 * 109.52017 * 61.74618 * 25 23 22 27 27 H 1.09004 * 109.46502 * 60.00158 * 1 2 3 28 28 H 1.08996 * 109.47277 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47142 * 300.00713 * 1 2 3 30 30 H 1.07998 * 120.04182 * 359.97438 * 4 3 2 31 31 H 1.08003 * 119.96267 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.92853 * 180.30034 * 6 5 4 33 33 H 1.08002 * 119.96572 * 179.72711 * 7 6 5 34 34 H 1.08996 * 109.47191 * 20.00561 * 9 8 7 35 35 H 1.09002 * 109.46967 * 140.00795 * 9 8 7 36 36 H 1.00903 * 111.00288 * 303.95464 * 10 9 8 37 37 H 1.08996 * 109.47077 * 300.00012 * 11 10 9 38 38 H 1.09007 * 109.47293 * 60.00112 * 11 10 9 39 39 H 0.97006 * 119.99337 * 180.02562 * 15 14 12 40 40 H 1.09000 * 109.52842 * 296.05122 * 20 2 1 41 41 H 1.08994 * 109.50572 * 302.38624 * 21 20 2 42 42 H 1.09002 * 109.49682 * 62.50670 * 21 20 2 43 43 H 1.09000 * 109.41473 * 299.07543 * 22 21 20 44 44 H 1.08994 * 109.46464 * 179.13583 * 22 21 20 45 45 H 1.08996 * 109.47126 * 184.21286 * 24 23 22 46 46 H 1.08998 * 109.47104 * 304.21465 * 24 23 22 47 47 H 1.09001 * 109.46953 * 64.20819 * 24 23 22 48 48 H 1.08992 * 109.46182 * 301.72609 * 25 23 22 49 49 H 1.09002 * 109.45916 * 181.75850 * 25 23 22 50 50 H 1.08997 * 109.49992 * 180.88250 * 26 25 23 51 51 H 1.08999 * 109.53853 * 60.78076 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9696 1.3040 0.0000 4 6 1.7258 2.1433 1.0800 5 6 2.2216 3.4321 1.0765 6 6 2.9651 3.8857 0.0020 7 6 3.2047 3.0549 -1.0769 8 6 2.7117 1.7646 -1.0798 9 6 2.9791 0.8576 -2.2533 10 7 1.7982 0.8257 -3.1265 11 6 2.0227 -0.0511 -4.2835 12 6 0.7924 -0.0591 -5.1540 13 1 -0.0701 0.5281 -4.8752 14 6 0.7676 -0.8168 -6.3056 15 7 1.8177 -1.5323 -6.6447 16 14 -0.7570 -0.8261 -7.3849 17 1 -0.6544 0.2568 -8.3958 18 1 -0.8682 -2.1372 -8.0733 19 1 -1.9605 -0.6053 -6.5433 20 6 1.9954 -0.7659 1.1376 21 6 3.5227 -0.8299 1.0487 22 6 4.0607 -1.6811 2.2011 23 7 3.4897 -3.0318 2.1233 24 6 4.0890 -3.9157 3.1321 25 6 2.0274 -2.9986 2.2548 26 6 1.4287 -2.1880 1.1031 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.1484 1.7885 1.9209 31 1 2.0329 4.0849 1.9158 32 1 3.3558 4.8926 0.0040 33 1 3.7819 3.4137 -1.9163 34 1 3.8356 1.2319 -2.8140 35 1 3.1921 -0.1489 -1.8933 36 1 0.9765 0.5434 -2.6133 37 1 2.8726 0.3164 -4.8584 38 1 2.2289 -1.0640 -3.9373 39 1 1.8004 -2.0651 -7.4551 40 1 1.7047 -0.2806 2.0693 41 1 3.8134 -1.2790 0.0991 42 1 3.9335 0.1775 1.1165 43 1 3.7823 -1.2234 3.1504 44 1 5.1467 -1.7414 2.1319 45 1 3.7035 -4.9271 3.0040 46 1 5.1724 -3.9218 3.0121 47 1 3.8359 -3.5538 4.1286 48 1 1.7586 -2.5346 3.2037 49 1 1.6369 -4.0158 2.2245 50 1 0.3446 -2.1504 1.2097 51 1 1.6849 -2.6589 0.1540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425984229.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:30 Heat of formation + Delta-G solvation = 40.272121 kcal Electronic energy + Delta-G solvation = -27724.148910 eV Core-core repulsion = 24237.101366 eV Total energy + Delta-G solvation = -3487.047544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.43021 -38.73093 -36.39508 -35.13622 -32.61694 -32.31199 -31.20220 -30.75494 -29.39424 -26.95664 -26.77625 -25.22263 -24.02298 -23.15555 -22.73957 -21.43194 -21.25337 -20.30090 -19.56833 -17.00648 -16.40583 -16.13511 -15.59196 -15.32161 -15.12854 -14.98128 -14.75304 -14.52340 -14.12791 -13.91556 -13.84954 -13.40283 -13.24442 -13.08761 -12.82523 -12.61957 -12.55231 -12.20042 -12.02064 -11.90446 -11.56990 -11.51666 -11.36327 -11.23889 -11.14272 -10.97063 -10.81596 -10.64007 -10.56179 -10.53121 -10.32031 -9.85209 -9.10358 -8.64367 -8.51487 -8.43926 -8.33471 -8.32718 -7.08186 -5.94439 -3.95510 1.46330 1.57865 3.37305 3.42744 3.46639 3.72960 3.83054 3.89561 4.50741 4.61883 4.73849 4.96206 4.96748 5.01930 5.05909 5.13671 5.18168 5.21498 5.33905 5.34846 5.41023 5.41423 5.47706 5.48239 5.53733 5.59216 5.64212 5.67943 5.71584 5.77008 5.83694 5.92823 5.97226 6.08155 6.16630 6.18475 6.24505 6.33629 6.52012 6.57722 6.64764 6.85218 6.88889 6.90911 7.03632 7.08518 7.39911 7.56829 7.60451 7.88388 8.24396 8.57269 8.76850 9.14298 9.68731 11.16685 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.003988 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.876790 B = 7018.547846 C = 8629.619302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.496 5.496 3 C 0.096 3.904 4 C -0.152 4.152 5 C -0.122 4.122 6 C -0.125 4.125 7 C -0.101 4.101 8 C -0.040 4.040 9 C 0.104 3.896 10 N -0.681 5.681 11 C 0.196 3.804 12 C -0.509 4.509 13 H 0.060 0.940 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.094 3.906 21 C -0.109 4.109 22 C 0.060 3.940 23 N -0.542 5.542 24 C 0.026 3.974 25 C 0.060 3.940 26 C -0.114 4.114 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.024 0.976 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.062 0.938 35 H 0.040 0.960 36 H 0.331 0.669 37 H 0.025 0.975 38 H -0.013 1.013 39 H 0.260 0.740 40 H 0.036 0.964 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.028 0.972 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.021 0.979 48 H 0.029 0.971 49 H 0.077 0.923 50 H 0.069 0.931 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 1.985 22.711 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.216 5.216 3 C 0.002 3.998 4 C -0.173 4.173 5 C -0.141 4.141 6 C -0.143 4.143 7 C -0.120 4.120 8 C -0.041 4.041 9 C -0.025 4.025 10 N -0.312 5.312 11 C 0.069 3.931 12 C -0.548 4.548 13 H 0.078 0.922 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.013 4.013 21 C -0.147 4.147 22 C -0.068 4.068 23 N -0.267 5.267 24 C -0.122 4.122 25 C -0.068 4.068 26 C -0.152 4.152 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.043 0.957 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.148 0.852 37 H 0.043 0.957 38 H 0.005 0.995 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.040 0.960 48 H 0.047 0.953 49 H 0.095 0.905 50 H 0.088 0.912 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.383 1.970 21.312 21.669 hybrid contribution -1.326 -0.155 1.339 1.891 sum 2.056 1.815 22.652 22.817 Atomic orbital electron populations 1.22515 0.85798 1.02560 1.01160 1.59566 1.08157 1.10756 1.43136 1.18584 0.98141 0.89197 0.93869 1.21489 1.01860 0.95018 0.98892 1.20874 0.99096 0.95551 0.98623 1.21099 0.99490 0.99567 0.94170 1.21067 0.99929 0.93024 0.97968 1.20003 0.95026 0.94461 0.94650 1.20697 0.95368 0.96172 0.90309 1.60805 1.03262 1.57535 1.09581 1.19526 0.97368 0.89181 0.87039 1.21182 1.00229 1.26576 1.06810 0.92185 1.24968 0.96338 0.95479 0.97742 1.69973 1.29095 1.29713 1.24988 0.86524 0.83283 0.77145 0.80575 1.20718 1.21370 1.19920 1.21684 0.95302 0.93632 0.90717 1.21622 0.93995 0.99421 0.99672 1.22067 0.99483 0.88121 0.97115 1.61908 1.05059 1.10489 1.49211 1.22344 1.00228 0.97226 0.92433 1.22070 0.87431 1.00424 0.96916 1.21744 0.99314 0.94127 1.00057 0.90425 0.90526 0.95726 0.87104 0.86804 0.86436 0.85729 0.91933 0.94186 0.85162 0.95714 0.99476 0.93039 0.94619 0.89783 0.91453 0.95361 0.90553 0.91331 0.91364 0.95997 0.95321 0.90491 0.91213 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 8.90 60.07 0.53 0.87 16 2 N -0.50 -6.92 3.61 -171.21 -0.62 -7.54 16 3 C 0.10 1.39 3.35 -83.79 -0.28 1.11 16 4 C -0.15 -1.94 8.57 -39.38 -0.34 -2.28 16 5 C -0.12 -1.45 10.04 -39.61 -0.40 -1.85 16 6 C -0.13 -1.54 10.04 -39.55 -0.40 -1.94 16 7 C -0.10 -1.45 9.66 -39.61 -0.38 -1.83 16 8 C -0.04 -0.64 5.41 -104.42 -0.56 -1.21 16 9 C 0.10 1.97 5.44 -4.98 -0.03 1.94 16 10 N -0.68 -15.29 6.48 -116.34 -0.75 -16.04 16 11 C 0.20 5.29 5.44 -4.97 -0.03 5.26 16 12 C -0.51 -14.77 9.32 -34.44 -0.32 -15.09 16 13 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 16 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 20 C 0.09 1.13 1.78 -67.59 -0.12 1.01 16 21 C -0.11 -1.34 5.21 -26.65 -0.14 -1.48 16 22 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 23 N -0.54 -5.85 4.91 -242.95 -1.19 -7.05 16 24 C 0.03 0.22 9.59 60.07 0.58 0.80 16 25 C 0.06 0.60 5.46 -3.83 -0.02 0.58 16 26 C -0.11 -1.30 4.94 -26.65 -0.13 -1.43 16 27 H 0.08 1.13 7.35 -51.93 -0.38 0.75 16 28 H 0.08 0.91 6.07 -51.93 -0.32 0.60 16 29 H 0.02 0.28 7.34 -51.93 -0.38 -0.10 16 30 H 0.11 1.27 7.02 -52.49 -0.37 0.91 16 31 H 0.11 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.70 8.04 -52.49 -0.42 1.28 16 34 H 0.06 1.18 8.00 -51.93 -0.42 0.77 16 35 H 0.04 0.79 7.70 -51.93 -0.40 0.39 16 36 H 0.33 7.29 7.65 -39.29 -0.30 6.99 16 37 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 38 H -0.01 -0.36 8.14 -51.93 -0.42 -0.79 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.04 0.42 7.13 -51.93 -0.37 0.05 16 41 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 42 H 0.07 0.85 7.32 -51.93 -0.38 0.47 16 43 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 47 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 50 H 0.07 0.72 6.42 -51.93 -0.33 0.38 16 51 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 394.85 15.07 5.95 5.95 Total: -1.00 -30.97 394.85 -12.15 -43.12 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -9.10 Total: 4.48 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.15 Total: -13.40 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -1.83 Total: -57.22 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.97 -12.15 -43.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425984229.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.394 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds