Wall clock time and date at job start Tue Mar 31 2020 11:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 H 1.08998 * 109.46991 * 55.92591 * 3 2 1 5 5 C 1.52998 * 109.47082 * 175.92357 * 3 2 1 6 6 N 1.46905 * 109.47073 * 294.50227 * 5 3 2 7 7 C 1.46897 * 110.99834 * 287.59463 * 6 5 3 8 8 C 1.52999 * 109.46668 * 163.84038 * 7 6 5 9 9 C 1.46898 * 110.99890 * 163.63866 * 6 5 3 10 10 C 1.52994 * 109.47471 * 273.31703 * 9 6 5 11 11 C 1.53003 * 109.46981 * 305.09761 * 10 9 6 12 12 C 1.53003 * 109.47594 * 65.09883 * 10 9 6 13 13 C 1.53005 * 109.47505 * 185.10104 * 10 9 6 14 14 C 1.50698 * 109.47635 * 179.97438 * 13 10 9 15 15 H 1.08003 * 119.99263 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00372 * 179.97438 * 14 13 10 17 17 N 1.31514 * 120.00278 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99911 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47260 * 89.99627 * 18 16 14 20 20 H 1.48494 * 109.47231 * 210.00162 * 18 16 14 21 21 H 1.48507 * 109.47207 * 329.99805 * 18 16 14 22 22 C 1.50698 * 109.46986 * 295.92638 * 3 2 1 23 23 C 1.38243 * 119.99633 * 299.72465 * 22 3 2 24 24 C 1.38241 * 119.99355 * 179.79388 * 23 22 3 25 25 C 1.38236 * 120.00200 * 0.44064 * 24 23 22 26 26 C 1.38233 * 120.00071 * 359.81419 * 25 24 23 27 27 C 1.38237 * 120.00100 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46967 * 55.75497 * 1 2 3 29 29 H 1.08997 * 109.47277 * 295.75197 * 1 2 3 30 30 H 1.09001 * 109.46824 * 175.75027 * 1 2 3 31 31 H 1.08994 * 109.47164 * 119.99706 * 2 1 3 32 32 H 1.08995 * 109.47202 * 240.00155 * 2 1 3 33 33 H 1.09000 * 109.47079 * 54.50108 * 5 3 2 34 34 H 1.08993 * 109.47554 * 174.50280 * 5 3 2 35 35 H 1.08994 * 109.47302 * 283.84114 * 7 6 5 36 36 H 1.09001 * 109.47185 * 43.84154 * 7 6 5 37 37 H 1.09004 * 109.47121 * 186.66694 * 8 7 6 38 38 H 1.09001 * 109.47637 * 306.66331 * 8 7 6 39 39 H 1.09000 * 109.47236 * 66.67401 * 8 7 6 40 40 H 1.09004 * 109.47068 * 33.31423 * 9 6 5 41 41 H 1.08999 * 109.46964 * 153.31135 * 9 6 5 42 42 H 1.09005 * 109.46743 * 64.19211 * 11 10 9 43 43 H 1.08998 * 109.47112 * 184.18363 * 11 10 9 44 44 H 1.08998 * 109.47423 * 304.19067 * 11 10 9 45 45 H 1.09005 * 109.46419 * 48.89399 * 12 10 9 46 46 H 1.08999 * 109.47562 * 168.89607 * 12 10 9 47 47 H 1.09005 * 109.46759 * 288.89902 * 12 10 9 48 48 H 1.09000 * 109.46867 * 300.00385 * 13 10 9 49 49 H 1.09004 * 109.46797 * 59.99510 * 13 10 9 50 50 H 0.96994 * 120.00294 * 180.02562 * 17 16 14 51 51 H 1.07992 * 120.00189 * 359.97438 * 23 22 3 52 52 H 1.08002 * 119.99447 * 180.27390 * 24 23 22 53 53 H 1.08001 * 119.99534 * 179.83572 * 25 24 23 54 54 H 1.07995 * 120.00171 * 180.02562 * 26 25 24 55 55 H 1.07995 * 120.00538 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6183 1.9770 0.8512 5 6 3.5665 1.4438 0.1025 6 7 3.9702 0.8998 1.4061 7 6 3.6810 1.8523 2.4864 8 6 3.7286 1.1265 3.8324 9 6 5.3901 0.5231 1.4024 10 6 5.5370 -0.9068 0.8784 11 6 4.6568 -1.8460 1.7055 12 6 5.1027 -0.9599 -0.5877 13 6 6.9986 -1.3445 0.9935 14 6 7.1433 -2.7531 0.4779 15 1 6.2792 -3.2830 0.1050 16 6 8.3788 -3.3650 0.4812 17 7 8.5052 -4.5941 0.0308 18 14 9.8734 -2.4482 1.1255 19 1 10.0200 -2.7017 2.5813 20 1 11.0886 -2.9218 0.4157 21 1 9.6996 -0.9920 0.8917 22 6 1.6217 2.1232 -1.2778 23 6 2.0434 1.6248 -2.4964 24 6 1.6562 2.2467 -3.6687 25 6 0.8549 3.3722 -3.6221 26 6 0.4376 3.8735 -2.4034 27 6 0.8212 3.2492 -1.2312 28 1 -0.3633 0.5783 -0.8495 29 1 -0.3634 0.4465 0.9256 30 1 -0.3633 -1.0249 -0.0762 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.9847 0.8277 -0.6935 34 1 3.9365 2.4644 0.0045 35 1 4.4244 2.6493 2.4768 36 1 2.6889 2.2791 2.3386 37 1 3.3991 1.8025 4.6215 38 1 3.0710 0.2578 3.8003 39 1 4.7494 0.8023 4.0345 40 1 5.9452 1.2050 0.7582 41 1 5.7838 0.5805 2.4172 42 1 3.6091 -1.5802 1.5644 43 1 4.8176 -2.8741 1.3811 44 1 4.9165 -1.7528 2.7599 45 1 5.5887 -0.1555 -1.1399 46 1 5.3890 -1.9200 -1.0170 47 1 4.0209 -0.8419 -0.6506 48 1 7.6257 -0.6753 0.4044 49 1 7.3080 -1.3066 2.0380 50 1 9.3743 -5.0247 0.0335 51 1 2.6729 0.7480 -2.5326 52 1 1.9820 1.8548 -4.6209 53 1 0.5546 3.8595 -4.5379 54 1 -0.1888 4.7525 -2.3669 55 1 0.4949 3.6406 -0.2790 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000482496516.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:45 Heat of formation + Delta-G solvation = -8.077851 kcal Electronic energy + Delta-G solvation = -28377.141677 eV Core-core repulsion = 24991.537864 eV Total energy + Delta-G solvation = -3385.603813 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.83557 -39.64007 -37.21178 -35.73049 -34.29868 -31.85670 -31.73851 -31.32892 -29.76670 -28.97406 -27.85047 -26.49220 -24.43838 -24.19159 -23.69448 -23.08582 -21.86227 -20.37658 -19.49942 -18.83005 -17.74806 -16.71992 -16.54294 -16.20602 -16.14039 -15.71446 -15.57889 -15.09775 -14.94524 -14.74587 -14.53558 -14.45157 -14.20709 -14.10725 -14.03758 -13.67212 -13.33790 -13.29094 -12.96741 -12.82725 -12.75404 -12.65628 -12.44798 -12.28853 -12.22095 -12.09803 -11.97832 -11.88350 -11.75132 -11.70572 -11.62130 -11.40831 -11.26030 -11.18250 -10.83786 -10.68298 -10.59908 -9.74723 -9.51330 -9.05281 -8.20157 -6.19601 0.53300 0.57116 1.35344 1.37029 1.47905 2.40126 2.90890 3.07187 3.14860 3.81004 3.93292 4.10171 4.17107 4.20961 4.22109 4.28867 4.31081 4.35511 4.42099 4.46659 4.52210 4.61034 4.66915 4.69844 4.75255 4.76321 4.78426 4.83464 4.91551 4.98577 5.01290 5.08539 5.11303 5.12662 5.15049 5.18413 5.22977 5.24741 5.25196 5.34876 5.42633 5.44802 5.48957 5.52323 5.55485 5.62299 5.67729 5.69877 5.73355 5.82073 5.85605 5.89054 6.19898 6.25465 6.36445 6.46214 6.87545 7.42434 8.96110 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.003457 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.074493 B = 8098.180302 C = 8807.914279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.030 4.030 4 H 0.084 0.916 5 C 0.050 3.950 6 N -0.526 5.526 7 C 0.050 3.950 8 C -0.143 4.143 9 C 0.073 3.927 10 C -0.039 4.039 11 C -0.103 4.103 12 C -0.126 4.126 13 C -0.003 4.003 14 C -0.498 4.498 15 H 0.045 0.955 16 C 0.001 3.999 17 N -0.955 5.955 18 Si 0.939 3.061 19 H -0.271 1.271 20 H -0.289 1.289 21 H -0.251 1.251 22 C -0.074 4.074 23 C -0.130 4.130 24 C -0.130 4.130 25 C -0.135 4.135 26 C -0.124 4.124 27 C -0.126 4.126 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.026 0.974 35 H 0.028 0.972 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.041 0.959 40 H 0.028 0.972 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.023 0.977 44 H 0.036 0.964 45 H 0.039 0.961 46 H 0.032 0.968 47 H 0.070 0.930 48 H 0.008 0.992 49 H 0.010 0.990 50 H 0.262 0.738 51 H 0.114 0.886 52 H 0.129 0.871 53 H 0.137 0.863 54 H 0.140 0.860 55 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.992 19.875 -0.127 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C -0.049 4.049 4 H 0.102 0.898 5 C -0.078 4.078 6 N -0.250 5.250 7 C -0.078 4.078 8 C -0.200 4.200 9 C -0.055 4.055 10 C -0.039 4.039 11 C -0.160 4.160 12 C -0.182 4.182 13 C -0.041 4.041 14 C -0.537 4.537 15 H 0.063 0.937 16 C -0.194 4.194 17 N -0.597 5.597 18 Si 0.764 3.236 19 H -0.196 1.196 20 H -0.215 1.215 21 H -0.175 1.175 22 C -0.074 4.074 23 C -0.148 4.148 24 C -0.148 4.148 25 C -0.153 4.153 26 C -0.142 4.142 27 C -0.144 4.144 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.042 0.958 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.089 0.911 48 H 0.026 0.974 49 H 0.028 0.972 50 H 0.070 0.930 51 H 0.132 0.868 52 H 0.147 0.853 53 H 0.155 0.845 54 H 0.158 0.842 55 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.145 19.337 -0.053 26.517 hybrid contribution 1.765 0.257 -0.193 1.794 sum -16.380 19.594 -0.246 25.540 Atomic orbital electron populations 1.21725 0.95589 1.01268 1.01565 1.21471 0.95609 0.95173 1.02097 1.20103 0.94121 0.96280 0.94403 0.89773 1.22511 0.95399 0.97682 0.92211 1.61915 1.18034 1.41488 1.03555 1.22170 1.01024 0.93116 0.91483 1.21757 1.01478 1.00947 0.95858 1.22114 0.88164 0.95024 1.00238 1.20247 0.94469 0.93903 0.95310 1.21475 0.99218 0.97405 0.97891 1.21917 1.00501 1.00095 0.95722 1.19596 0.94512 0.94619 0.95387 1.21415 0.94324 0.98685 1.39245 0.93695 1.25894 1.02177 0.95517 0.95853 1.70062 1.24996 1.14691 1.49950 0.85829 0.78863 0.80223 0.78726 1.19595 1.21515 1.17498 1.19916 0.97250 0.95629 0.94631 1.21158 1.00547 1.00355 0.92739 1.21380 0.98435 0.96480 0.98469 1.21406 0.98422 0.96640 0.98802 1.21416 1.00075 1.00414 0.92326 1.21278 0.98447 0.95479 0.99211 0.93325 0.92273 0.93131 0.90965 0.93380 0.89896 0.95574 0.95372 0.89673 0.91066 0.92322 0.94006 0.95345 0.91362 0.91353 0.95826 0.94446 0.94152 0.94909 0.91087 0.97352 0.97191 0.92966 0.86827 0.85293 0.84491 0.84204 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.79 71.98 0.70 -2.03 16 2 C -0.11 -2.31 4.70 30.60 0.14 -2.16 16 3 C -0.03 -0.61 2.07 -11.54 -0.02 -0.63 16 4 H 0.08 1.52 6.16 -2.39 -0.01 1.51 16 5 C 0.05 1.17 3.35 86.30 0.29 1.46 16 6 N -0.53 -13.04 2.75 -896.25 -2.47 -15.51 16 7 C 0.05 1.02 5.46 86.30 0.47 1.49 16 8 C -0.14 -2.87 9.89 71.98 0.71 -2.16 16 9 C 0.07 2.23 4.01 86.30 0.35 2.57 16 10 C -0.04 -1.46 0.61 -52.18 -0.03 -1.49 16 11 C -0.10 -3.86 7.99 71.98 0.57 -3.28 16 12 C -0.13 -4.64 6.81 71.98 0.49 -4.15 16 13 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 14 C -0.50 -28.23 8.00 25.60 0.20 -28.03 16 15 H 0.04 2.79 6.00 -2.91 -0.02 2.77 16 16 C 0.00 0.06 5.47 84.65 0.46 0.53 16 17 N -0.95 -60.52 13.96 21.44 0.30 -60.22 16 18 Si 0.94 45.24 27.47 68.60 1.88 47.12 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 21 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 22 C -0.07 -1.48 3.65 -19.86 -0.07 -1.55 16 23 C -0.13 -2.80 8.72 22.27 0.19 -2.61 16 24 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 25 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 26 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 27 C -0.13 -2.19 9.67 22.27 0.22 -1.98 16 28 H 0.05 0.94 7.21 -2.39 -0.02 0.92 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.75 6.64 -2.39 -0.02 1.74 16 32 H 0.05 1.16 6.58 -2.39 -0.02 1.14 16 33 H 0.08 2.21 3.61 -2.39 -0.01 2.20 16 34 H 0.03 0.62 8.05 -2.39 -0.02 0.61 16 35 H 0.03 0.58 8.05 -2.39 -0.02 0.56 16 36 H 0.08 1.48 6.25 -2.39 -0.01 1.47 16 37 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.04 0.95 6.79 -2.39 -0.02 0.93 16 40 H 0.03 0.89 7.79 -2.39 -0.02 0.87 16 41 H 0.07 2.08 6.30 -2.39 -0.02 2.06 16 42 H 0.07 2.26 6.58 -2.38 -0.02 2.24 16 43 H 0.02 1.02 6.49 -2.39 -0.02 1.01 16 44 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.04 1.41 7.56 -2.38 -0.02 1.39 16 46 H 0.03 1.43 6.33 -2.39 -0.02 1.42 16 47 H 0.07 2.28 5.06 -2.38 -0.01 2.26 16 48 H 0.01 0.39 7.20 -2.39 -0.02 0.37 16 49 H 0.01 0.46 7.57 -2.38 -0.02 0.44 16 50 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 51 H 0.11 2.58 7.15 -2.91 -0.02 2.56 16 52 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 53 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 54 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 55 H 0.13 1.83 7.95 -2.91 -0.02 1.81 16 Total: -1.00 -64.38 402.86 5.94 -58.44 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.78 Total: 20.27 kcal Atomic # 6 Polarization: -55.55 SS G_CDS: 5.44 Total: -50.11 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -2.17 Total: -75.73 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.12 kcal Total: -64.38 5.94 -58.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000482496516.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.362 kcal (2) G-P(sol) polarization free energy of solvation -64.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds