Wall clock time and date at job start Tue Mar 31 2020 11:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46934 * 2 1 4 4 H 1.09001 * 109.47535 * 305.00436 * 3 2 1 5 5 C 1.53005 * 109.47167 * 185.00073 * 3 2 1 6 6 N 1.46903 * 109.46693 * 65.00306 * 5 3 2 7 7 C 1.46901 * 110.99724 * 75.63775 * 6 5 3 8 8 C 1.53007 * 109.47193 * 195.75919 * 7 6 5 9 9 C 1.46898 * 110.99975 * 199.58997 * 6 5 3 10 10 C 1.52998 * 109.47128 * 85.89777 * 9 6 5 11 11 C 1.52995 * 109.47138 * 298.85546 * 10 9 6 12 12 C 1.53007 * 109.46602 * 58.85552 * 10 9 6 13 13 C 1.52998 * 109.47207 * 178.85026 * 10 9 6 14 14 C 1.50701 * 109.47393 * 180.02562 * 13 10 9 15 15 H 1.08000 * 119.99538 * 0.02562 * 14 13 10 16 16 C 1.37875 * 120.00138 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99923 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00101 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46712 * 90.00110 * 18 16 14 20 20 H 1.48499 * 109.47178 * 210.00066 * 18 16 14 21 21 H 1.48503 * 109.47093 * 330.00210 * 18 16 14 22 22 C 1.50700 * 109.46976 * 65.00757 * 3 2 1 23 23 C 1.38239 * 120.00107 * 59.71981 * 22 3 2 24 24 C 1.38235 * 119.99656 * 179.80873 * 23 22 3 25 25 C 1.38233 * 120.00112 * 0.40609 * 24 23 22 26 26 C 1.38224 * 120.00326 * 359.84992 * 25 24 23 27 27 C 1.38233 * 119.99901 * 239.99863 * 22 3 2 28 28 H 1.08998 * 109.46673 * 299.98998 * 1 2 3 29 29 H 1.08998 * 109.47209 * 59.99802 * 1 2 3 30 30 H 1.08997 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.09012 * 109.46843 * 240.00945 * 2 1 3 32 32 H 1.08996 * 109.47676 * 120.00799 * 2 1 3 33 33 H 1.09004 * 109.47372 * 185.00103 * 5 3 2 34 34 H 1.08994 * 109.47162 * 305.00831 * 5 3 2 35 35 H 1.08994 * 109.47568 * 315.76079 * 7 6 5 36 36 H 1.09005 * 109.47356 * 75.76084 * 7 6 5 37 37 H 1.08998 * 109.47010 * 54.39897 * 8 7 6 38 38 H 1.08993 * 109.47134 * 174.40556 * 8 7 6 39 39 H 1.08998 * 109.46824 * 294.40399 * 8 7 6 40 40 H 1.09004 * 109.47156 * 205.90275 * 9 6 5 41 41 H 1.09007 * 109.47260 * 325.90021 * 9 6 5 42 42 H 1.08990 * 109.47379 * 70.47472 * 11 10 9 43 43 H 1.09004 * 109.46812 * 190.47713 * 11 10 9 44 44 H 1.08997 * 109.47117 * 310.46747 * 11 10 9 45 45 H 1.08994 * 109.47216 * 65.19295 * 12 10 9 46 46 H 1.09003 * 109.46782 * 185.19368 * 12 10 9 47 47 H 1.08997 * 109.46653 * 305.18746 * 12 10 9 48 48 H 1.09003 * 109.47103 * 300.00726 * 13 10 9 49 49 H 1.08996 * 109.47143 * 60.00129 * 13 10 9 50 50 H 0.96994 * 120.00206 * 179.97438 * 17 16 14 51 51 H 1.07995 * 119.99792 * 0.02562 * 23 22 3 52 52 H 1.08000 * 119.99718 * 180.23339 * 24 23 22 53 53 H 1.07998 * 119.99845 * 179.83105 * 25 24 23 54 54 H 1.08004 * 120.00530 * 179.97438 * 26 25 24 55 55 H 1.08007 * 120.00107 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5649 1.4444 -0.1257 6 7 3.9489 0.8964 -1.4335 7 6 3.7136 1.8747 -2.5038 8 6 3.7432 1.1651 -3.8590 9 6 5.3484 0.4499 -1.4268 10 6 5.4234 -0.9849 -0.9007 11 6 4.8913 -1.0308 0.5330 12 6 4.5762 -1.8985 -1.7887 13 6 6.8776 -1.4600 -0.9206 14 6 6.9514 -2.8734 -0.4030 15 1 6.0511 -3.3820 -0.0914 16 6 8.1683 -3.5171 -0.3272 17 7 8.2327 -4.7507 0.1241 18 14 9.7255 -2.6376 -0.8667 19 1 10.3142 -1.9183 0.2914 20 1 10.7022 -3.6309 -1.3811 21 1 9.3979 -1.6642 -1.9394 22 6 1.6414 2.1161 1.2878 23 6 2.0722 1.6045 2.4976 24 6 1.7099 2.2249 3.6786 25 6 0.9098 3.3518 3.6503 26 6 0.4747 3.8603 2.4409 27 6 0.8403 3.2423 1.2595 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5137 -0.8902 32 1 1.8935 -0.5139 0.8898 33 1 3.9356 2.4655 -0.0366 34 1 3.9954 0.8311 0.6657 35 1 2.7401 2.3433 -2.3603 36 1 4.4916 2.6377 -2.4762 37 1 3.0337 0.3377 -3.8514 38 1 3.4710 1.8701 -4.6444 39 1 4.7462 0.7818 -4.0466 40 1 5.7463 0.4864 -2.4409 41 1 5.9355 1.1043 -0.7824 42 1 3.8128 -0.8738 0.5256 43 1 5.1139 -2.0033 0.9722 44 1 5.3684 -0.2482 1.1229 45 1 5.0098 -1.9379 -2.7879 46 1 4.5546 -2.9014 -1.3622 47 1 3.5606 -1.5071 -1.8483 48 1 7.2566 -1.4272 -1.9421 49 1 7.4812 -0.8091 -0.2881 50 1 9.0887 -5.2038 0.1770 51 1 2.6948 0.7224 2.5199 52 1 2.0496 1.8274 4.6236 53 1 0.6245 3.8348 4.5731 54 1 -0.1508 4.7405 2.4187 55 1 0.5003 3.6396 0.3145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000482496517.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:50 Heat of formation + Delta-G solvation = -6.941373 kcal Electronic energy + Delta-G solvation = -28423.145818 eV Core-core repulsion = 25037.591287 eV Total energy + Delta-G solvation = -3385.554532 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.85216 -39.64743 -37.17371 -35.75999 -34.30430 -31.84944 -31.74011 -31.33683 -29.76362 -28.98393 -27.85682 -26.49424 -24.45314 -24.16539 -23.69572 -23.08203 -21.85184 -20.40042 -19.50308 -18.82438 -17.73560 -16.69320 -16.53260 -16.21202 -16.16343 -15.70354 -15.57251 -15.11422 -14.96341 -14.73807 -14.57149 -14.42633 -14.18333 -14.10206 -14.03900 -13.66835 -13.35230 -13.28158 -12.92678 -12.84134 -12.81867 -12.63122 -12.43398 -12.27070 -12.21484 -12.11275 -11.98422 -11.89420 -11.74853 -11.70936 -11.59270 -11.39429 -11.27884 -11.18780 -10.83413 -10.68592 -10.57505 -9.74581 -9.51468 -9.05488 -8.20344 -6.19862 0.53539 0.57256 1.34975 1.36856 1.47849 2.39943 2.90877 3.07440 3.14703 3.81934 3.93621 4.10409 4.17246 4.20837 4.22315 4.28802 4.31275 4.35704 4.43019 4.46882 4.52861 4.61972 4.67150 4.70144 4.74637 4.76102 4.78235 4.83655 4.91679 4.98715 5.00823 5.08376 5.10829 5.14063 5.15310 5.18906 5.23118 5.24227 5.25670 5.35762 5.42686 5.44710 5.49030 5.51418 5.55179 5.62181 5.67942 5.70061 5.73316 5.82044 5.85912 5.88452 6.20149 6.25247 6.36378 6.46214 6.87457 7.42273 8.95968 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.003537 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.229734 B = 7915.382810 C = 8678.072566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C -0.029 4.029 4 H 0.084 0.916 5 C 0.047 3.953 6 N -0.526 5.526 7 C 0.050 3.950 8 C -0.143 4.143 9 C 0.072 3.928 10 C -0.038 4.038 11 C -0.128 4.128 12 C -0.104 4.104 13 C -0.004 4.004 14 C -0.499 4.499 15 H 0.044 0.956 16 C 0.001 3.999 17 N -0.955 5.955 18 Si 0.939 3.061 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.250 1.250 22 C -0.074 4.074 23 C -0.130 4.130 24 C -0.130 4.130 25 C -0.135 4.135 26 C -0.124 4.124 27 C -0.126 4.126 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.028 0.972 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.028 0.972 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.030 0.970 44 H 0.040 0.960 45 H 0.033 0.967 46 H 0.022 0.978 47 H 0.072 0.928 48 H 0.011 0.989 49 H 0.006 0.994 50 H 0.261 0.739 51 H 0.113 0.887 52 H 0.129 0.871 53 H 0.137 0.863 54 H 0.140 0.860 55 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.124 20.353 -0.374 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.048 4.048 4 H 0.102 0.898 5 C -0.080 4.080 6 N -0.250 5.250 7 C -0.077 4.077 8 C -0.201 4.201 9 C -0.056 4.056 10 C -0.039 4.039 11 C -0.185 4.185 12 C -0.161 4.161 13 C -0.042 4.042 14 C -0.537 4.537 15 H 0.062 0.938 16 C -0.194 4.194 17 N -0.597 5.597 18 Si 0.763 3.237 19 H -0.198 1.198 20 H -0.215 1.215 21 H -0.174 1.174 22 C -0.074 4.074 23 C -0.148 4.148 24 C -0.148 4.148 25 C -0.153 4.153 26 C -0.142 4.142 27 C -0.144 4.144 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.094 0.906 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.041 0.959 47 H 0.091 0.909 48 H 0.030 0.970 49 H 0.025 0.975 50 H 0.070 0.930 51 H 0.131 0.869 52 H 0.147 0.853 53 H 0.155 0.845 54 H 0.158 0.842 55 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.303 19.826 -0.455 26.318 hybrid contribution 1.812 0.183 0.322 1.849 sum -15.491 20.009 -0.133 25.305 Atomic orbital electron populations 1.21718 0.95577 1.01285 1.01507 1.21500 0.95630 0.95252 1.02099 1.20084 0.94253 0.96237 0.94201 0.89786 1.22548 0.95577 0.97763 0.92138 1.61892 1.20596 1.38697 1.03827 1.22166 1.01028 0.92962 0.91569 1.21758 1.01578 1.00945 0.95774 1.22102 0.88421 0.94781 1.00278 1.20239 0.94495 0.93790 0.95368 1.21977 1.00800 0.99935 0.95776 1.21481 0.99568 0.97554 0.97497 1.19613 0.94561 0.94487 0.95492 1.21413 0.93616 0.98358 1.40293 0.93763 1.25899 1.02573 0.95435 0.95537 1.70062 1.26257 1.13676 1.49698 0.85831 0.79406 0.78785 0.79631 1.19758 1.21460 1.17353 1.19923 0.97242 0.95615 0.94650 1.21156 1.00634 1.00273 0.92780 1.21375 0.98547 0.96508 0.98366 1.21400 0.98333 0.96619 0.98914 1.21419 1.00077 1.00412 0.92314 1.21281 0.98417 0.95537 0.99135 0.93416 0.92212 0.93138 0.90911 0.93348 0.95411 0.89853 0.89724 0.95364 0.92288 0.91071 0.93968 0.91287 0.95359 0.90608 0.95077 0.94149 0.94779 0.95869 0.90936 0.97029 0.97533 0.92967 0.86894 0.85341 0.84494 0.84178 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.73 71.98 0.70 -2.07 16 2 C -0.11 -2.37 4.29 30.59 0.13 -2.24 16 3 C -0.03 -0.59 2.08 -11.54 -0.02 -0.61 16 4 H 0.08 1.53 6.37 -2.39 -0.02 1.51 16 5 C 0.05 1.12 3.32 86.30 0.29 1.40 16 6 N -0.53 -13.00 2.65 -896.19 -2.37 -15.37 16 7 C 0.05 1.02 5.45 86.31 0.47 1.49 16 8 C -0.14 -2.84 9.90 71.98 0.71 -2.13 16 9 C 0.07 2.21 4.00 86.30 0.34 2.55 16 10 C -0.04 -1.44 0.60 -52.18 -0.03 -1.47 16 11 C -0.13 -4.74 6.73 71.98 0.48 -4.25 16 12 C -0.10 -3.90 8.01 71.98 0.58 -3.33 16 13 C 0.00 -0.17 3.11 29.85 0.09 -0.08 16 14 C -0.50 -28.28 8.12 25.60 0.21 -28.07 16 15 H 0.04 2.76 5.99 -2.91 -0.02 2.74 16 16 C 0.00 0.06 5.47 84.65 0.46 0.53 16 17 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 18 Si 0.94 45.26 27.47 68.60 1.88 47.15 16 19 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 22 C -0.07 -1.49 3.76 -19.87 -0.07 -1.57 16 23 C -0.13 -2.86 8.71 22.27 0.19 -2.66 16 24 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 25 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 26 C -0.12 -1.99 10.05 22.27 0.22 -1.76 16 27 C -0.13 -2.20 9.67 22.27 0.22 -1.99 16 28 H 0.05 0.94 7.38 -2.39 -0.02 0.92 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.79 6.73 -2.38 -0.02 1.78 16 32 H 0.05 1.19 6.18 -2.39 -0.01 1.18 16 33 H 0.03 0.66 8.00 -2.39 -0.02 0.64 16 34 H 0.08 2.24 3.52 -2.39 -0.01 2.23 16 35 H 0.08 1.46 6.47 -2.39 -0.02 1.45 16 36 H 0.03 0.58 8.06 -2.38 -0.02 0.56 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.04 0.95 6.73 -2.39 -0.02 0.94 16 40 H 0.07 2.10 6.26 -2.38 -0.01 2.08 16 41 H 0.03 0.88 7.85 -2.38 -0.02 0.86 16 42 H 0.08 2.42 4.31 -2.39 -0.01 2.41 16 43 H 0.03 1.36 6.35 -2.39 -0.02 1.35 16 44 H 0.04 1.41 7.27 -2.39 -0.02 1.40 16 45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.02 0.99 6.80 -2.39 -0.02 0.97 16 47 H 0.07 2.36 6.52 -2.39 -0.02 2.35 16 48 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 49 H 0.01 0.30 7.57 -2.39 -0.02 0.28 16 50 H 0.26 15.63 8.31 -92.71 -0.77 14.85 16 51 H 0.11 2.63 7.13 -2.91 -0.02 2.61 16 52 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 53 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 54 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 55 H 0.13 1.84 7.95 -2.91 -0.02 1.82 16 Total: -1.00 -64.54 401.73 6.01 -58.53 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.78 Total: 20.58 kcal Atomic # 6 Polarization: -56.03 SS G_CDS: 5.42 Total: -50.61 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -2.07 Total: -75.65 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.15 kcal Total: -64.54 6.01 -58.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000482496517.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.584 kcal (2) G-P(sol) polarization free energy of solvation -64.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds