Wall clock time and date at job start Tue Mar 31 2020 12:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47162 * 156.85673 * 3 2 1 5 5 C 1.36950 * 120.00162 * 264.40624 * 4 3 2 6 6 H 1.07995 * 120.00040 * 137.08317 * 5 4 3 7 7 C 1.38964 * 119.99756 * 317.08656 * 5 4 3 8 8 N 1.31414 * 120.00481 * 348.37484 * 7 5 4 9 9 Si 1.86802 * 119.99740 * 168.36895 * 7 5 4 10 10 H 1.48499 * 109.46946 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46948 * 120.00182 * 9 7 5 12 12 H 1.48502 * 109.47384 * 239.99997 * 9 7 5 13 13 C 1.34780 * 120.00111 * 84.40774 * 4 3 2 14 14 O 1.21679 * 119.99750 * 5.00583 * 13 4 3 15 15 C 1.47169 * 120.00134 * 185.00186 * 13 4 3 16 16 C 1.36248 * 122.55414 * 177.65927 * 15 13 4 17 17 S 1.71000 * 109.07106 * 180.02562 * 16 15 13 18 18 C 1.75961 * 90.66882 * 359.97438 * 17 16 15 19 19 C 1.47143 * 125.23063 * 180.02562 * 18 17 16 20 20 C 1.35104 * 125.28402 * 359.74745 * 19 18 17 21 21 C 1.37770 * 114.68123 * 179.82917 * 20 19 18 22 22 C 1.33743 * 115.09145 * 0.45989 * 21 20 19 23 23 S 1.75857 * 109.78322 * 359.75473 * 22 21 20 24 24 N 1.30065 * 109.54354 * 0.26990 * 18 17 16 25 25 H 4.40639 * 5.51431 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47039 * 36.85250 * 3 2 1 27 27 H 1.08998 * 109.47119 * 276.86074 * 3 2 1 28 28 H 0.97000 * 120.00352 * 180.02562 * 8 7 5 29 29 H 1.08004 * 125.46589 * 0.02562 * 16 15 13 30 30 H 1.08008 * 122.65988 * 359.97438 * 20 19 18 31 31 H 1.07997 * 122.44954 * 180.21191 * 21 20 19 32 32 H 1.08005 * 125.10696 * 179.78337 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2709 -0.5428 5 6 3.4710 1.3654 -1.8668 6 1 3.1722 2.2307 -2.4397 7 6 4.1975 0.3476 -2.4730 8 7 4.7560 -0.5883 -1.7389 9 14 4.3800 0.3099 -4.3317 10 1 3.6628 1.4679 -4.9231 11 1 5.8195 0.3846 -4.6893 12 1 3.8036 -0.9525 -4.8603 13 6 3.2507 2.3466 0.2607 14 8 3.0387 2.2404 1.4542 15 6 3.6348 3.6497 -0.3053 16 6 3.7229 4.7800 0.4503 17 16 4.1921 6.0854 -0.5496 18 6 4.2449 5.0209 -1.9497 19 6 4.6002 5.4334 -3.3167 20 6 4.9315 6.6882 -3.6919 21 6 5.2293 6.8290 -5.0297 22 6 5.1359 5.7076 -5.7525 23 16 4.6521 4.3708 -4.7174 24 7 3.9165 3.8144 -1.5916 25 1 -1.0502 -0.0003 0.0003 26 1 3.0097 -0.8215 -0.6164 27 1 3.0094 -0.1219 1.0203 28 1 5.2634 -1.2985 -2.1620 29 1 3.5278 4.8416 1.5108 30 1 4.9629 7.5151 -2.9977 31 1 5.5132 7.7763 -5.4636 32 1 5.3291 5.6340 -6.8126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490998223.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:09 Heat of formation + Delta-G solvation = 121.913510 kcal Electronic energy + Delta-G solvation = -21119.848203 eV Core-core repulsion = 17880.795596 eV Total energy + Delta-G solvation = -3239.052606 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 318.024 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.69630 -37.99458 -37.34118 -35.10566 -32.46844 -31.46200 -31.17176 -28.55210 -27.12954 -25.26764 -24.74204 -23.29495 -21.13190 -19.81201 -18.91759 -17.98280 -17.77673 -17.06780 -16.55294 -15.45159 -15.19975 -14.81476 -14.58777 -14.40222 -13.91192 -13.75477 -13.01316 -12.95329 -12.87933 -12.66942 -12.17093 -12.06106 -12.04788 -11.58345 -11.46361 -11.10622 -10.98525 -10.67555 -10.16141 -9.79049 -9.66954 -9.46641 -9.20334 -9.01723 -8.97643 -8.57990 -8.41631 -7.88224 -7.52291 -6.37231 -4.06742 0.34762 1.19630 1.41240 1.88873 2.02254 2.28383 2.53828 3.04418 3.18905 3.23261 3.27827 3.48225 3.69760 4.13506 4.19592 4.35783 4.85664 4.97080 5.05112 5.37093 5.39762 5.42144 5.52490 5.69344 5.91831 6.00800 6.24600 6.38515 6.45636 6.69440 6.75306 7.04316 7.61672 7.81782 8.02475 8.42687 8.50438 9.06424 9.34589 9.78116 10.68014 Molecular weight = 318.02amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.006412 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.795709 B = 4365.680017 C = 6103.816185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.154 4.154 3 C 0.209 3.791 4 N -0.412 5.412 5 C -0.311 4.311 6 H 0.121 0.879 7 C 0.040 3.960 8 N -0.874 5.874 9 Si 0.904 3.096 10 H -0.253 1.253 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.533 3.467 14 O -0.595 6.595 15 C 0.061 3.939 16 C -0.232 4.232 17 S 0.140 5.860 18 C 0.090 3.910 19 C -0.113 4.113 20 C -0.126 4.126 21 C -0.135 4.135 22 C -0.234 4.234 23 S 0.204 5.796 24 N -0.377 5.377 25 H 0.208 0.792 26 H 0.133 0.867 27 H 0.083 0.917 28 H 0.270 0.730 29 H 0.185 0.815 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 12.313 -6.222 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.155 4.155 3 C 0.087 3.913 4 N -0.127 5.127 5 C -0.440 4.440 6 H 0.139 0.861 7 C -0.164 4.164 8 N -0.512 5.512 9 Si 0.730 3.270 10 H -0.177 1.177 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.320 3.680 14 O -0.481 6.481 15 C -0.075 4.075 16 C -0.375 4.375 17 S 0.396 5.604 18 C -0.186 4.186 19 C -0.234 4.234 20 C -0.161 4.161 21 C -0.165 4.165 22 C -0.371 4.371 23 S 0.469 5.531 24 N -0.091 5.091 25 H 0.225 0.775 26 H 0.150 0.850 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.203 0.797 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.496 11.100 -6.116 12.683 hybrid contribution 0.050 0.487 -0.286 0.567 sum 0.547 11.587 -6.401 13.249 Atomic orbital electron populations 1.24597 0.95615 1.02557 1.04535 1.24334 0.95444 0.98474 0.97286 1.18572 0.81450 0.90549 1.00767 1.43272 1.52902 1.07206 1.09322 1.20271 1.32004 1.07491 0.84233 0.86149 1.25483 0.94473 0.96360 1.00077 1.69812 1.31607 1.14073 1.35735 0.86173 0.78623 0.78968 0.83253 1.17650 1.20307 1.20592 1.17379 0.81858 0.83467 0.85276 1.90665 1.57418 1.85287 1.14724 1.20607 1.03541 0.96054 0.87302 1.26684 1.08941 0.95643 1.06193 1.83310 1.62608 1.13337 1.01190 1.25153 1.06308 0.91618 0.95472 1.21938 1.10181 0.97463 0.93859 1.20243 1.03467 0.95649 0.96760 1.19876 1.04297 0.99315 0.93017 1.26086 1.09347 0.97481 1.04236 1.85228 1.63144 1.08762 0.95979 1.67944 1.10299 1.15864 1.15036 0.77506 0.84974 0.89860 0.92015 0.79748 0.84204 0.84209 0.81762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.12 19.25 29.55 0.57 -4.55 16 2 C -0.15 -3.58 13.62 -37.12 -0.51 -4.08 16 3 C 0.21 5.20 5.37 -6.83 -0.04 5.16 16 4 N -0.41 -10.84 2.47 -119.25 -0.29 -11.13 16 5 C -0.31 -8.13 7.88 -15.00 -0.12 -8.25 16 6 H 0.12 3.13 5.62 -52.49 -0.30 2.83 16 7 C 0.04 1.04 5.10 -17.46 -0.09 0.95 16 8 N -0.87 -23.25 11.34 55.50 0.63 -22.62 16 9 Si 0.90 19.76 29.57 -169.99 -5.03 14.73 16 10 H -0.25 -5.18 7.11 56.52 0.40 -4.78 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.53 13.83 7.54 -12.63 -0.10 13.73 16 14 O -0.60 -16.16 16.32 5.21 0.08 -16.08 16 15 C 0.06 1.39 6.53 -84.58 -0.55 0.83 16 16 C -0.23 -4.28 10.62 30.02 0.32 -3.96 16 17 S 0.14 2.05 22.73 -107.50 -2.44 -0.39 16 18 C 0.09 1.63 7.43 -14.69 -0.11 1.52 16 19 C -0.11 -1.79 6.42 -37.08 -0.24 -2.02 16 20 C -0.13 -1.57 9.87 -40.87 -0.40 -1.98 16 21 C -0.13 -1.46 10.16 -41.33 -0.42 -1.88 16 22 C -0.23 -2.70 11.23 29.16 0.33 -2.38 16 23 S 0.20 3.21 23.29 -107.50 -2.50 0.70 16 24 N -0.38 -8.22 6.87 -8.07 -0.06 -8.27 16 25 H 0.21 3.17 7.80 -54.08 -0.42 2.75 16 26 H 0.13 3.39 5.65 -51.93 -0.29 3.10 16 27 H 0.08 2.08 7.53 -51.93 -0.39 1.69 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.19 3.13 8.01 -52.48 -0.42 2.71 16 30 H 0.14 1.44 7.89 -52.48 -0.41 1.02 16 31 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -30.69 321.85 -8.33 -39.02 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -2.22 Total: 6.09 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.35 Total: -6.90 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.28 Total: -42.03 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.08 Total: -16.08 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -4.95 Total: 0.31 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.69 -8.33 -39.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490998223.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.933 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds