Wall clock time and date at job start Tue Mar 31 2020 12:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46924 * 166.77403 * 3 2 1 5 5 C 1.36943 * 120.00241 * 264.50360 * 4 3 2 6 6 H 1.07999 * 120.00189 * 189.80488 * 5 4 3 7 7 C 1.38810 * 119.99739 * 9.80331 * 5 4 3 8 8 N 1.31624 * 119.99915 * 27.77061 * 7 5 4 9 9 Si 1.86798 * 120.00161 * 207.77013 * 7 5 4 10 10 H 1.48507 * 109.46925 * 60.00072 * 9 7 5 11 11 H 1.48500 * 109.47445 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47122 * 300.00641 * 9 7 5 13 13 C 1.46507 * 120.00152 * 84.49807 * 4 3 2 14 14 C 1.50702 * 109.46858 * 90.00132 * 13 4 3 15 15 C 1.37976 * 120.07167 * 259.72834 * 14 13 4 16 16 C 1.38317 * 120.16587 * 179.76927 * 15 14 13 17 17 C 1.38477 * 120.29229 * 0.50633 * 16 15 14 18 18 Br 1.89100 * 119.93353 * 179.76634 * 17 16 15 19 19 C 1.38020 * 120.13173 * 359.74536 * 17 16 15 20 20 C 1.39621 * 120.06421 * 79.99890 * 14 13 4 21 21 C 1.43201 * 120.14682 * 0.02562 * 20 14 13 22 22 N 6.06771 * 133.91002 * 159.72560 * 2 1 3 23 23 H 4.40637 * 5.51474 * 180.02562 * 4 1 2 24 24 H 1.09000 * 109.47662 * 46.78094 * 3 2 1 25 25 H 1.08999 * 109.47531 * 286.77319 * 3 2 1 26 26 H 0.97000 * 119.99696 * 180.02562 * 8 7 5 27 27 H 1.08993 * 109.47282 * 209.99926 * 13 4 3 28 28 H 1.09001 * 109.47034 * 330.00818 * 13 4 3 29 29 H 1.07998 * 119.91007 * 359.97438 * 15 14 13 30 30 H 1.07993 * 119.85578 * 180.25308 * 16 15 14 31 31 H 1.08001 * 120.07899 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1336 1.3455 -0.3160 5 6 3.4688 1.6672 -1.6042 6 1 3.9745 2.5981 -1.8143 7 6 3.1586 0.7968 -2.6401 8 7 2.1271 -0.0137 -2.5320 9 14 4.2050 0.7756 -4.1873 10 1 5.6047 0.4278 -3.8335 11 1 3.6686 -0.2351 -5.1339 12 1 4.1741 2.1167 -4.8242 13 6 3.2626 2.3463 0.7461 14 6 4.6405 2.2624 1.3507 15 6 4.8319 1.6003 2.5460 16 6 6.0964 1.5180 3.1003 17 6 7.1769 2.1075 2.4658 18 35 8.9003 1.9943 3.2359 19 6 6.9986 2.7772 1.2722 20 6 5.7252 2.8592 0.7051 21 6 5.5324 3.5533 -0.5325 22 7 5.3821 4.1005 -1.5147 23 1 -1.0503 -0.0004 0.0003 24 1 3.0097 -0.7029 -0.7489 25 1 3.0095 -0.2957 0.9839 26 1 1.9106 -0.6222 -3.2557 27 1 3.1092 3.3413 0.3284 28 1 2.5156 2.1566 1.5168 29 1 3.9926 1.1425 3.0484 30 1 6.2412 0.9950 4.0340 31 1 7.8419 3.2364 0.7779 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491143962.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:45 Heat of formation + Delta-G solvation = 134.529685 kcal Electronic energy + Delta-G solvation = -17938.137850 eV Core-core repulsion = 15040.408059 eV Total energy + Delta-G solvation = -2897.729791 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73427 -37.91722 -37.39809 -34.32739 -33.48643 -32.54552 -32.32744 -30.58959 -28.05543 -27.30936 -24.92849 -23.76827 -22.25179 -19.47532 -19.41252 -18.17358 -17.20550 -16.84105 -16.73211 -15.78290 -15.50228 -15.28211 -14.95017 -14.84570 -14.16357 -13.99658 -13.95141 -13.71992 -13.43172 -13.29012 -12.90798 -12.75078 -12.42686 -12.21963 -12.14822 -11.84854 -11.56796 -11.22969 -10.85344 -10.68819 -10.29322 -9.96561 -9.58349 -9.05690 -7.93728 -5.21724 -0.21905 0.16982 0.61997 1.35334 1.38874 1.44697 1.77317 1.96948 2.29814 2.50881 2.56294 2.81557 3.02420 3.19434 3.79629 3.86150 3.93257 4.08084 4.14526 4.30713 4.55858 4.60331 4.85598 4.90351 4.97188 5.09062 5.21334 5.40494 5.50370 5.65305 5.72432 5.75785 6.22262 6.57733 7.07492 7.34668 7.79084 8.16466 9.09669 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.017508 B = 0.004457 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.921870 B = 6280.146321 C = 7099.046754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.138 4.138 3 C 0.265 3.735 4 N -0.588 5.588 5 C -0.272 4.272 6 H 0.088 0.912 7 C -0.034 4.034 8 N -0.902 5.902 9 Si 0.922 3.078 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.294 1.294 13 C 0.170 3.830 14 C -0.029 4.029 15 C -0.101 4.101 16 C -0.049 4.049 17 C -0.106 4.106 18 Br -0.037 7.037 19 C -0.045 4.045 20 C -0.028 4.028 21 C 0.280 3.720 22 N -0.462 5.462 23 H 0.221 0.779 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.247 0.753 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.165 0.835 30 H 0.168 0.832 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.358 1.378 18.682 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.141 4.141 3 C 0.140 3.860 4 N -0.308 5.308 5 C -0.402 4.402 6 H 0.106 0.894 7 C -0.230 4.230 8 N -0.547 5.547 9 Si 0.752 3.248 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.221 1.221 13 C 0.044 3.956 14 C -0.035 4.035 15 C -0.120 4.120 16 C -0.069 4.069 17 C -0.185 4.185 18 Br 0.048 6.952 19 C -0.067 4.067 20 C -0.033 4.033 21 C -0.034 4.034 22 N -0.138 5.138 23 H 0.238 0.762 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.183 0.817 30 H 0.186 0.814 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.726 2.083 17.298 21.002 hybrid contribution -0.324 -0.129 -1.637 1.674 sum 11.402 1.954 15.661 19.470 Atomic orbital electron populations 1.25082 0.96471 1.02878 1.06616 1.24788 0.96218 0.97880 0.95194 1.17939 0.82499 0.87015 0.98535 1.44230 1.74286 1.08767 1.03484 1.19863 1.31150 1.05115 0.84028 0.89447 1.25128 0.97956 1.00753 0.99193 1.70334 1.24164 1.27127 1.33069 0.86026 0.80406 0.76629 0.81772 1.20992 1.21573 1.22070 1.19979 0.91729 0.92554 0.91288 1.21122 0.96193 0.92623 0.93593 1.21257 0.98390 0.98362 0.94001 1.21624 0.90338 0.95047 0.99871 1.21629 0.92975 1.05933 0.97996 1.96728 1.18379 1.97857 1.82207 1.21099 0.95340 0.96411 0.93856 1.15917 0.95182 1.02591 0.89568 1.25754 0.92393 0.92334 0.92933 1.81073 1.08370 1.12576 1.11804 0.76205 0.90913 0.90496 0.94325 0.93974 0.89769 0.81723 0.81405 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.22 19.25 74.32 1.43 -10.79 16 2 C -0.14 -6.24 11.95 31.12 0.37 -5.86 16 3 C 0.26 11.52 5.42 84.57 0.46 11.97 16 4 N -0.59 -26.48 2.48 -716.89 -1.78 -28.26 16 5 C -0.27 -14.39 9.01 84.03 0.76 -13.63 16 6 H 0.09 4.68 4.32 -2.91 -0.01 4.66 16 7 C -0.03 -1.86 4.79 84.86 0.41 -1.46 16 8 N -0.90 -51.38 9.66 21.65 0.21 -51.17 16 9 Si 0.92 46.59 29.63 68.60 2.03 48.62 16 10 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 11 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 12 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16 13 C 0.17 6.03 5.41 85.63 0.46 6.49 16 14 C -0.03 -0.84 5.50 -19.59 -0.11 -0.95 16 15 C -0.10 -2.04 9.66 22.23 0.21 -1.83 16 16 C -0.05 -0.83 9.78 22.35 0.22 -0.61 16 17 C -0.11 -2.11 6.22 22.27 0.14 -1.97 16 18 Br -0.04 -0.64 33.69 -20.37 -0.69 -1.33 16 19 C -0.04 -1.08 9.49 22.56 0.21 -0.86 16 20 C -0.03 -0.84 5.73 -21.36 -0.12 -0.96 16 21 C 0.28 10.59 11.93 88.35 1.05 11.64 16 22 N -0.46 -20.02 16.87 18.98 0.32 -19.70 16 23 H 0.22 7.44 7.80 -4.41 -0.03 7.40 16 24 H 0.07 3.66 6.09 -2.39 -0.01 3.64 16 25 H 0.08 2.68 8.11 -2.39 -0.02 2.66 16 26 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 27 H 0.04 1.64 7.37 -2.39 -0.02 1.62 16 28 H 0.08 2.57 7.93 -2.39 -0.02 2.55 16 29 H 0.17 2.48 8.03 -2.91 -0.02 2.46 16 30 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -66.03 301.88 6.76 -59.27 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 1.16 Total: 1.38 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 5.50 Total: -8.82 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -1.25 Total: -99.13 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -0.69 Total: -1.33 kcal Total: -66.03 6.76 -59.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491143962.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.802 kcal (2) G-P(sol) polarization free energy of solvation -66.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds