Wall clock time and date at job start Tue Mar 31 2020 11:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00186 * 2 1 4 4 H 1.48499 * 109.47494 * 89.99520 * 3 2 1 5 5 H 1.48502 * 109.47096 * 209.99893 * 3 2 1 6 6 H 1.48504 * 109.47236 * 329.99446 * 3 2 1 7 7 C 1.37886 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99984 * 5.13851 * 7 2 1 9 9 C 1.50706 * 119.99589 * 185.13516 * 7 2 1 10 10 O 1.42890 * 112.93948 * 52.41060 * 9 7 2 11 11 C 1.53936 * 113.73345 * 280.69653 * 9 7 2 12 12 N 1.47951 * 86.17971 * 221.92550 * 11 9 7 13 13 C 1.46905 * 110.99822 * 137.58619 * 12 11 9 14 14 C 1.50706 * 109.47340 * 70.63960 * 13 12 11 15 15 N 1.28997 * 124.90687 * 89.69063 * 14 13 12 16 16 C 1.31811 * 117.13308 * 179.84360 * 15 14 13 17 17 C 1.33728 * 114.47252 * 0.44816 * 16 15 14 18 18 Br 1.89092 * 126.04594 * 179.80422 * 17 16 15 19 19 S 1.70968 * 124.90331 * 270.00296 * 14 13 12 20 20 C 1.47949 * 90.76613 * 24.69333 * 12 11 9 21 21 H 0.96998 * 120.00034 * 174.95957 * 1 2 3 22 22 H 0.96708 * 113.99980 * 304.19125 * 10 9 7 23 23 H 1.09000 * 113.76260 * 336.24966 * 11 9 7 24 24 H 1.09003 * 113.75356 * 107.60639 * 11 9 7 25 25 H 1.08999 * 109.47421 * 190.63970 * 13 12 11 26 26 H 1.09004 * 109.47241 * 310.64132 * 13 12 11 27 27 H 1.07998 * 122.76413 * 180.23777 * 16 15 14 28 28 H 1.09002 * 113.76401 * 220.98939 * 20 12 11 29 29 H 1.09003 * 113.76318 * 89.62656 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4677 -2.1276 -0.0828 9 6 3.5070 -1.1966 0.1174 10 8 3.9800 -0.4419 1.2346 11 6 4.2316 -0.8750 -1.2022 12 7 5.1700 -1.9587 -0.8360 13 6 5.4903 -2.7938 -2.0014 14 6 6.3556 -2.0127 -2.9566 15 7 7.6448 -1.9816 -2.9280 16 6 8.2489 -1.2480 -3.8414 17 6 7.4214 -0.6181 -4.6821 18 35 7.9331 0.5173 -6.1050 19 16 5.7699 -1.0338 -4.2301 20 6 4.1347 -2.5978 0.0058 21 1 -0.4850 -0.8368 -0.0738 22 1 3.6758 0.4761 1.2464 23 1 3.6393 -1.0888 -2.0919 24 1 4.6891 0.1141 -1.2221 25 1 6.0245 -3.6856 -1.6736 26 1 4.5680 -3.0866 -2.5031 27 1 9.3235 -1.1601 -3.9036 28 1 4.5148 -2.9853 0.9510 29 1 3.5141 -3.3156 -0.5306 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530547745.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:46 Heat of formation + Delta-G solvation = 49.607032 kcal Electronic energy + Delta-G solvation = -16677.311209 eV Core-core repulsion = 13775.509753 eV Total energy + Delta-G solvation = -2901.801457 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.02258 -39.23034 -35.05207 -32.66547 -32.54461 -30.80142 -28.15209 -26.21835 -25.58255 -24.23728 -22.05561 -19.77727 -19.14251 -18.34007 -17.89257 -15.97322 -15.74895 -15.46570 -15.12679 -14.36777 -14.21783 -13.91589 -13.34356 -12.96367 -12.56449 -12.28442 -12.01328 -11.75999 -11.58480 -11.29629 -11.20009 -10.63625 -10.60952 -10.33933 -9.70382 -9.69016 -9.46544 -9.29660 -8.99831 -8.89197 -8.58378 -8.19896 -6.66613 -4.43328 0.37359 0.72367 1.40871 1.65638 2.61657 3.15315 3.21367 3.35778 3.99355 4.21406 4.45281 4.79727 4.93216 5.05144 5.27101 5.38157 5.52453 5.66086 5.76344 5.86572 6.00927 6.32316 6.47074 6.72232 6.76091 7.46958 7.56067 7.58433 8.08728 8.54588 8.66410 9.31674 10.67999 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.021618 B = 0.004225 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.910969 B = 6625.114626 C = 7364.911673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.035 3.965 3 Si 1.029 2.971 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.281 1.281 7 C -0.612 4.612 8 H 0.068 0.932 9 C 0.207 3.793 10 O -0.552 6.552 11 C -0.041 4.041 12 N -0.466 5.466 13 C 0.086 3.914 14 C 0.084 3.916 15 N -0.462 5.462 16 C 0.088 3.912 17 C -0.267 4.267 18 Br 0.019 6.981 19 S 0.188 5.812 20 C 0.026 3.974 21 H 0.272 0.728 22 H 0.352 0.648 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.181 0.819 28 H 0.085 0.915 29 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.646 -0.742 -13.231 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.172 4.172 3 Si 0.857 3.143 4 H -0.203 1.203 5 H -0.190 1.190 6 H -0.207 1.207 7 C -0.650 4.650 8 H 0.086 0.914 9 C 0.166 3.834 10 O -0.361 6.361 11 C -0.170 4.170 12 N -0.190 5.190 13 C -0.045 4.045 14 C -0.194 4.194 15 N -0.177 5.177 16 C -0.069 4.069 17 C -0.468 4.468 18 Br 0.102 6.898 19 S 0.442 5.558 20 C -0.102 4.102 21 H 0.082 0.918 22 H 0.202 0.798 23 H 0.090 0.910 24 H 0.098 0.902 25 H 0.123 0.877 26 H 0.083 0.917 27 H 0.198 0.802 28 H 0.104 0.896 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.803 0.821 -13.247 19.881 hybrid contribution 0.040 -1.546 -0.499 1.625 sum 14.842 -0.725 -13.746 20.242 Atomic orbital electron populations 1.70781 1.06712 1.31113 1.44166 1.25792 0.96466 1.02510 0.92464 0.84342 0.76019 0.76076 0.77861 1.20256 1.18996 1.20735 1.22383 0.90201 0.95890 1.56541 0.91417 1.20336 0.92778 0.88315 0.81980 1.86446 1.76136 1.25508 1.47982 1.25287 0.93911 0.96005 1.01820 1.68786 1.31976 1.07189 1.11079 1.21391 0.96201 0.96047 0.90867 1.27209 0.93427 0.99878 0.98854 1.66451 1.07856 1.20643 1.22718 1.21903 1.01603 0.93461 0.89890 1.27765 0.99539 1.12574 1.06915 1.96688 1.90859 1.61658 1.40599 1.84329 1.04513 1.41296 1.25641 1.24022 0.91170 0.97477 0.97553 0.91770 0.79823 0.91024 0.90201 0.87710 0.91695 0.80208 0.89613 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.70 55.43 0.76 -25.20 15 2 C 0.03 0.94 5.47 -17.82 -0.10 0.84 15 3 Si 1.03 23.06 24.79 -169.99 -4.21 18.85 15 4 H -0.28 -5.87 6.95 56.52 0.39 -5.47 15 5 H -0.26 -5.42 4.85 56.52 0.27 -5.15 15 6 H -0.28 -6.35 7.11 56.52 0.40 -5.94 15 7 C -0.61 -16.16 9.04 -34.43 -0.31 -16.47 15 8 H 0.07 1.89 8.04 -52.49 -0.42 1.47 15 9 C 0.21 4.80 1.06 -90.84 -0.10 4.70 15 10 O -0.55 -13.27 13.42 -35.23 -0.47 -13.74 15 11 C -0.04 -0.84 5.31 -2.77 -0.01 -0.86 15 12 N -0.47 -8.87 6.25 -239.73 -1.50 -10.37 15 13 C 0.09 1.34 5.40 -4.97 -0.03 1.32 15 14 C 0.08 1.29 6.48 -13.47 -0.09 1.21 15 15 N -0.46 -7.16 10.54 -11.84 -0.12 -7.28 15 16 C 0.09 1.15 11.30 -19.14 -0.22 0.93 15 17 C -0.27 -3.41 7.08 29.15 0.21 -3.21 15 18 Br 0.02 0.21 34.09 -68.01 -2.32 -2.11 15 19 S 0.19 2.59 22.81 -107.50 -2.45 0.14 15 20 C 0.03 0.52 7.36 -2.77 -0.02 0.50 15 21 H 0.27 7.83 8.72 -40.82 -0.36 7.47 15 22 H 0.35 7.95 4.23 45.56 0.19 8.14 15 23 H 0.07 1.43 7.73 -51.93 -0.40 1.03 15 24 H 0.08 1.68 6.52 -51.93 -0.34 1.34 15 25 H 0.10 1.49 8.14 -51.93 -0.42 1.06 15 26 H 0.07 0.93 7.69 -51.93 -0.40 0.53 15 27 H 0.18 1.86 8.06 -52.49 -0.42 1.43 15 28 H 0.09 1.66 8.14 -51.93 -0.42 1.24 15 29 H 0.07 1.38 7.74 -51.93 -0.40 0.97 15 LS Contribution 278.02 15.07 4.19 4.19 Total: -1.00 -29.32 278.02 -9.12 -38.44 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -2.33 Total: 8.13 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -0.66 Total: -11.04 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: -0.86 Total: -42.84 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.47 Total: -13.74 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.21 Total: 18.85 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.45 Total: 0.14 kcal Atomic # 35 Polarization: 0.21 SS G_CDS: -2.32 Total: -2.11 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.32 -9.12 -38.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530547745.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.045 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds